Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01730 and DDA3937_RS01735 are separated by 11 nucleotides DDA3937_RS01735 and DDA3937_RS01740 are separated by 192 nucleotides
DDA3937_RS01730: DDA3937_RS01730 - glutathionylspermidine synthase family protein, at 383,261 to 384,421
_RS01730
DDA3937_RS01735: DDA3937_RS01735 - DUF1190 family protein, at 384,433 to 385,194
_RS01735
DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799
_RS01740
Position (kb) 384
385
386 Strain fitness (log2 ratio) -2
-1
0
1
2 at 383.527 kb on - strand, within DDA3937_RS01730 at 383.563 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.803 kb on - strand, within DDA3937_RS01730 at 383.846 kb on + strand, within DDA3937_RS01730 at 383.847 kb on - strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.902 kb on + strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.970 kb on + strand, within DDA3937_RS01730 at 384.049 kb on - strand, within DDA3937_RS01730 at 384.064 kb on + strand, within DDA3937_RS01730 at 384.109 kb on - strand, within DDA3937_RS01730 at 384.129 kb on + strand, within DDA3937_RS01730 at 384.130 kb on - strand at 384.301 kb on + strand, within DDA3937_RS01730 at 384.301 kb on + strand, within DDA3937_RS01730 at 384.302 kb on - strand, within DDA3937_RS01730 at 384.309 kb on + strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.313 kb on - strand at 384.313 kb on - strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.435 kb on - strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.907 kb on - strand, within DDA3937_RS01735 at 384.953 kb on + strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 385.058 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.138 kb on - strand at 385.254 kb on - strand at 385.259 kb on + strand at 385.260 kb on - strand at 385.262 kb on + strand at 385.262 kb on + strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.279 kb on + strand at 385.301 kb on + strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.323 kb on + strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.395 kb on + strand at 385.491 kb on + strand at 385.605 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.750 kb on - strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.911 kb on - strand, within DDA3937_RS01740 at 386.142 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 383,527 - DDA3937_RS01730 0.23 -0.9 383,563 - DDA3937_RS01730 0.26 +0.1 383,790 - DDA3937_RS01730 0.46 +0.7 383,790 - DDA3937_RS01730 0.46 -0.3 383,790 - DDA3937_RS01730 0.46 -0.1 383,802 + DDA3937_RS01730 0.47 -0.2 383,802 + DDA3937_RS01730 0.47 +0.3 383,803 - DDA3937_RS01730 0.47 -0.4 383,846 + DDA3937_RS01730 0.50 +0.7 383,847 - DDA3937_RS01730 0.50 -1.2 383,850 + DDA3937_RS01730 0.51 -0.3 383,850 + DDA3937_RS01730 0.51 +1.1 383,850 + DDA3937_RS01730 0.51 -0.9 383,851 - DDA3937_RS01730 0.51 -0.3 383,851 - DDA3937_RS01730 0.51 -0.8 383,851 - DDA3937_RS01730 0.51 +1.5 383,851 - DDA3937_RS01730 0.51 -1.7 383,851 - DDA3937_RS01730 0.51 -1.1 383,851 - DDA3937_RS01730 0.51 -0.4 383,851 - DDA3937_RS01730 0.51 +0.1 383,902 + DDA3937_RS01730 0.55 -1.3 383,903 - DDA3937_RS01730 0.55 -0.9 383,903 - DDA3937_RS01730 0.55 +0.5 383,970 + DDA3937_RS01730 0.61 -0.5 384,049 - DDA3937_RS01730 0.68 -0.6 384,064 + DDA3937_RS01730 0.69 +0.1 384,109 - DDA3937_RS01730 0.73 +2.2 384,129 + DDA3937_RS01730 0.75 -0.2 384,130 - -1.7 384,301 + DDA3937_RS01730 0.90 -0.5 384,301 + DDA3937_RS01730 0.90 -1.1 384,302 - DDA3937_RS01730 0.90 -1.2 384,309 + -0.3 384,310 - +0.5 384,310 - -0.6 384,310 - -0.9 384,310 - +0.1 384,312 + +1.2 384,312 + +0.2 384,312 + +1.1 384,313 - +0.9 384,313 - -1.5 384,342 + -0.1 384,342 + +0.2 384,342 + -0.9 384,342 + +1.1 384,342 + -0.3 384,342 + +0.4 384,342 + +0.4 384,342 + +0.1 384,343 - +0.4 384,343 - +0.2 384,343 - -1.3 384,367 - -0.7 384,367 - +1.7 384,367 - -0.3 384,435 - +1.8 384,507 + -1.0 384,507 + -0.4 384,507 + +2.2 384,508 - +0.7 384,508 - +0.7 384,508 - -1.2 384,731 + DDA3937_RS01735 0.39 -0.9 384,731 + DDA3937_RS01735 0.39 -1.9 384,731 + DDA3937_RS01735 0.39 -1.3 384,731 + DDA3937_RS01735 0.39 +0.1 384,731 + DDA3937_RS01735 0.39 +1.0 384,731 + DDA3937_RS01735 0.39 -0.2 384,731 + DDA3937_RS01735 0.39 +0.4 384,731 + DDA3937_RS01735 0.39 -1.2 384,731 + DDA3937_RS01735 0.39 -0.7 384,731 + DDA3937_RS01735 0.39 -0.9 384,731 + DDA3937_RS01735 0.39 -0.5 384,731 + DDA3937_RS01735 0.39 +1.7 384,731 + DDA3937_RS01735 0.39 +0.7 384,732 - DDA3937_RS01735 0.39 +0.1 384,732 - DDA3937_RS01735 0.39 -0.6 384,732 - DDA3937_RS01735 0.39 -0.6 384,732 - DDA3937_RS01735 0.39 -1.7 384,732 - DDA3937_RS01735 0.39 +0.4 384,732 - DDA3937_RS01735 0.39 +0.7 384,732 - DDA3937_RS01735 0.39 -0.5 384,732 - DDA3937_RS01735 0.39 -0.9 384,732 - DDA3937_RS01735 0.39 +0.5 384,906 + DDA3937_RS01735 0.62 -1.5 384,906 + DDA3937_RS01735 0.62 -0.2 384,907 - DDA3937_RS01735 0.62 -0.2 384,953 + DDA3937_RS01735 0.68 +0.2 384,994 - DDA3937_RS01735 0.74 -0.9 384,994 - DDA3937_RS01735 0.74 -0.3 384,995 + DDA3937_RS01735 0.74 -0.4 384,995 + DDA3937_RS01735 0.74 +0.4 384,995 + DDA3937_RS01735 0.74 -0.3 384,996 - DDA3937_RS01735 0.74 +1.7 384,996 - DDA3937_RS01735 0.74 -0.4 384,996 - DDA3937_RS01735 0.74 -1.9 384,996 - DDA3937_RS01735 0.74 -1.2 384,996 - DDA3937_RS01735 0.74 +0.7 384,996 - DDA3937_RS01735 0.74 +0.1 385,058 + DDA3937_RS01735 0.82 -0.0 385,101 + DDA3937_RS01735 0.88 -0.8 385,101 + DDA3937_RS01735 0.88 -0.2 385,138 - -1.5 385,254 - +0.1 385,259 + +0.7 385,260 - +0.2 385,262 + -0.5 385,262 + -0.5 385,263 - -0.3 385,263 - -0.3 385,263 - +1.1 385,279 + +0.7 385,301 + -1.2 385,302 - -0.6 385,302 - -0.4 385,302 - +0.5 385,323 + -1.2 385,324 - -0.4 385,324 - +0.3 385,324 - +0.4 385,395 + +0.3 385,491 + +0.4 385,605 - DDA3937_RS01740 0.15 -0.7 385,612 - DDA3937_RS01740 0.16 +0.3 385,612 - DDA3937_RS01740 0.16 -1.5 385,750 - DDA3937_RS01740 0.26 -0.7 385,910 + DDA3937_RS01740 0.37 -1.7 385,910 + DDA3937_RS01740 0.37 -1.3 385,910 + DDA3937_RS01740 0.37 +1.1 385,910 + DDA3937_RS01740 0.37 +0.7 385,910 + DDA3937_RS01740 0.37 -0.3 385,910 + DDA3937_RS01740 0.37 -0.9 385,910 + DDA3937_RS01740 0.37 +1.7 385,911 - DDA3937_RS01740 0.37 +0.7 386,142 + -1.3
Or see this region's nucleotide sequence