Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01710 and DDA3937_RS01715 are separated by 59 nucleotides DDA3937_RS01715 and DDA3937_RS01720 are separated by 685 nucleotides
DDA3937_RS01710: DDA3937_RS01710 - penicillin-binding protein activator, at 377,694 to 379,745
_RS01710
DDA3937_RS01715: DDA3937_RS01715 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 379,805 to 380,674
_RS01715
DDA3937_RS01720: DDA3937_RS01720 - shikimate 5-dehydrogenase, at 381,360 to 382,169
_RS01720
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.066 kb on - strand, within DDA3937_RS01710 at 379.142 kb on + strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.267 kb on + strand, within DDA3937_RS01710 at 379.267 kb on + strand, within DDA3937_RS01710 at 379.267 kb on + strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.324 kb on + strand, within DDA3937_RS01710 at 379.324 kb on + strand, within DDA3937_RS01710 at 379.324 kb on + strand, within DDA3937_RS01710 at 379.325 kb on - strand, within DDA3937_RS01710 at 379.327 kb on + strand, within DDA3937_RS01710 at 379.327 kb on + strand, within DDA3937_RS01710 at 379.328 kb on - strand, within DDA3937_RS01710 at 379.328 kb on - strand, within DDA3937_RS01710 at 379.328 kb on - strand, within DDA3937_RS01710 at 379.379 kb on + strand, within DDA3937_RS01710 at 379.539 kb on + strand, within DDA3937_RS01710 at 379.540 kb on - strand at 379.540 kb on - strand at 379.540 kb on - strand at 379.540 kb on - strand at 379.559 kb on + strand at 379.559 kb on + strand at 379.559 kb on + strand at 379.560 kb on - strand at 379.592 kb on - strand at 379.594 kb on + strand at 379.595 kb on - strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.624 kb on - strand at 379.722 kb on - strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.750 kb on + strand at 379.750 kb on + strand at 379.751 kb on - strand at 379.751 kb on - strand at 379.779 kb on - strand at 379.781 kb on + strand at 379.847 kb on + strand at 379.847 kb on + strand at 379.847 kb on + strand at 379.848 kb on - strand at 379.848 kb on - strand at 379.924 kb on + strand, within DDA3937_RS01715 at 379.924 kb on + strand, within DDA3937_RS01715 at 379.925 kb on - strand, within DDA3937_RS01715 at 379.939 kb on + strand, within DDA3937_RS01715 at 379.939 kb on + strand, within DDA3937_RS01715 at 379.939 kb on + strand, within DDA3937_RS01715 at 379.956 kb on + strand, within DDA3937_RS01715 at 379.956 kb on + strand, within DDA3937_RS01715 at 379.957 kb on - strand at 379.963 kb on - strand, within DDA3937_RS01715 at 379.978 kb on + strand at 379.978 kb on + strand, within DDA3937_RS01715 at 379.978 kb on + strand, within DDA3937_RS01715 at 379.978 kb on + strand, within DDA3937_RS01715 at 379.979 kb on - strand, within DDA3937_RS01715 at 379.979 kb on - strand, within DDA3937_RS01715 at 380.225 kb on + strand, within DDA3937_RS01715 at 380.226 kb on - strand, within DDA3937_RS01715 at 380.226 kb on - strand, within DDA3937_RS01715 at 380.226 kb on - strand, within DDA3937_RS01715 at 380.261 kb on - strand, within DDA3937_RS01715 at 380.266 kb on + strand, within DDA3937_RS01715 at 380.267 kb on - strand, within DDA3937_RS01715 at 380.375 kb on + strand, within DDA3937_RS01715 at 380.375 kb on + strand, within DDA3937_RS01715 at 380.375 kb on + strand, within DDA3937_RS01715 at 380.421 kb on - strand at 380.421 kb on - strand, within DDA3937_RS01715 at 380.636 kb on + strand at 380.672 kb on + strand at 381.111 kb on + strand at 381.112 kb on - strand at 381.201 kb on - strand at 381.284 kb on + strand at 381.284 kb on + strand at 381.285 kb on - strand at 381.298 kb on + strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.328 kb on + strand at 381.328 kb on + strand at 381.328 kb on + strand at 381.328 kb on + strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.360 kb on - strand at 381.411 kb on - strand at 381.411 kb on - strand at 381.411 kb on - strand at 381.413 kb on + strand at 381.413 kb on + strand at 381.413 kb on + strand at 381.414 kb on - strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.420 kb on - strand at 381.420 kb on - strand at 381.420 kb on - strand at 381.435 kb on + strand at 381.435 kb on + strand at 381.436 kb on - strand at 381.465 kb on - strand at 381.465 kb on - strand, within DDA3937_RS01720 at 381.466 kb on + strand, within DDA3937_RS01720 at 381.467 kb on - strand, within DDA3937_RS01720 at 381.467 kb on - strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.470 kb on + strand, within DDA3937_RS01720 at 381.470 kb on + strand, within DDA3937_RS01720 at 381.471 kb on - strand, within DDA3937_RS01720 at 381.471 kb on - strand, within DDA3937_RS01720 at 381.471 kb on - strand, within DDA3937_RS01720 at 381.479 kb on + strand, within DDA3937_RS01720 at 381.483 kb on - strand, within DDA3937_RS01720 at 381.491 kb on + strand at 381.492 kb on - strand, within DDA3937_RS01720 at 381.506 kb on - strand, within DDA3937_RS01720 at 381.569 kb on + strand, within DDA3937_RS01720 at 381.584 kb on + strand, within DDA3937_RS01720 at 381.584 kb on + strand, within DDA3937_RS01720 at 381.621 kb on - strand at 381.623 kb on + strand, within DDA3937_RS01720 at 381.623 kb on + strand, within DDA3937_RS01720 at 381.623 kb on + strand, within DDA3937_RS01720 at 381.623 kb on + strand, within DDA3937_RS01720 at 381.624 kb on - strand, within DDA3937_RS01720 at 381.624 kb on - strand, within DDA3937_RS01720 at 381.624 kb on - strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.627 kb on - strand, within DDA3937_RS01720 at 381.657 kb on + strand, within DDA3937_RS01720 at 381.658 kb on - strand, within DDA3937_RS01720 at 381.658 kb on - strand, within DDA3937_RS01720 at 381.662 kb on + strand, within DDA3937_RS01720 at 381.669 kb on + strand, within DDA3937_RS01720 at 381.669 kb on + strand, within DDA3937_RS01720 at 381.671 kb on + strand, within DDA3937_RS01720 at 381.672 kb on - strand, within DDA3937_RS01720 at 381.672 kb on - strand, within DDA3937_RS01720
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 379,066 - DDA3937_RS01710 0.67 -0.9 379,142 + DDA3937_RS01710 0.71 -0.7 379,143 - DDA3937_RS01710 0.71 -0.7 379,143 - DDA3937_RS01710 0.71 -0.7 379,143 - DDA3937_RS01710 0.71 -2.8 379,143 - DDA3937_RS01710 0.71 -1.5 379,267 + DDA3937_RS01710 0.77 -0.0 379,267 + DDA3937_RS01710 0.77 -1.4 379,267 + DDA3937_RS01710 0.77 -0.5 379,268 - DDA3937_RS01710 0.77 -1.3 379,268 - DDA3937_RS01710 0.77 -2.7 379,268 - DDA3937_RS01710 0.77 -2.0 379,268 - DDA3937_RS01710 0.77 -0.3 379,268 - DDA3937_RS01710 0.77 -0.1 379,324 + DDA3937_RS01710 0.79 -0.3 379,324 + DDA3937_RS01710 0.79 +0.1 379,324 + DDA3937_RS01710 0.79 -0.6 379,325 - DDA3937_RS01710 0.79 -0.3 379,327 + DDA3937_RS01710 0.80 -0.8 379,327 + DDA3937_RS01710 0.80 -0.3 379,328 - DDA3937_RS01710 0.80 +0.3 379,328 - DDA3937_RS01710 0.80 +0.9 379,328 - DDA3937_RS01710 0.80 -1.0 379,379 + DDA3937_RS01710 0.82 +1.2 379,539 + DDA3937_RS01710 0.90 -0.3 379,540 - -0.9 379,540 - -0.5 379,540 - +0.9 379,540 - -0.1 379,559 + -0.3 379,559 + -0.9 379,559 + -0.9 379,560 - -0.4 379,592 - -0.6 379,594 + +0.3 379,595 - -0.5 379,623 + +1.6 379,623 + +1.7 379,623 + -0.3 379,623 + -0.4 379,623 + -1.7 379,624 - -1.3 379,722 - -0.2 379,745 + -1.0 379,745 + -1.2 379,745 + -0.3 379,745 + -0.7 379,745 + -2.3 379,746 - -0.2 379,746 - +0.4 379,746 - -0.4 379,746 - -0.7 379,746 - -1.2 379,750 + -0.6 379,750 + +0.1 379,751 - -2.5 379,751 - -0.6 379,779 - -0.6 379,781 + +0.2 379,847 + +0.1 379,847 + +0.4 379,847 + -0.3 379,848 - +0.1 379,848 - -1.3 379,924 + DDA3937_RS01715 0.14 -0.9 379,924 + DDA3937_RS01715 0.14 -0.1 379,925 - DDA3937_RS01715 0.14 -0.2 379,939 + DDA3937_RS01715 0.15 -1.1 379,939 + DDA3937_RS01715 0.15 -0.8 379,939 + DDA3937_RS01715 0.15 -2.2 379,956 + DDA3937_RS01715 0.17 -1.0 379,956 + DDA3937_RS01715 0.17 -1.5 379,957 - +0.7 379,963 - DDA3937_RS01715 0.18 -0.8 379,978 + -0.3 379,978 + DDA3937_RS01715 0.20 -0.5 379,978 + DDA3937_RS01715 0.20 +0.2 379,978 + DDA3937_RS01715 0.20 +0.5 379,979 - DDA3937_RS01715 0.20 -0.8 379,979 - DDA3937_RS01715 0.20 +0.1 380,225 + DDA3937_RS01715 0.48 -1.7 380,226 - DDA3937_RS01715 0.48 +0.7 380,226 - DDA3937_RS01715 0.48 +0.1 380,226 - DDA3937_RS01715 0.48 -0.3 380,261 - DDA3937_RS01715 0.52 -1.2 380,266 + DDA3937_RS01715 0.53 -1.0 380,267 - DDA3937_RS01715 0.53 +0.1 380,375 + DDA3937_RS01715 0.66 -1.0 380,375 + DDA3937_RS01715 0.66 +0.3 380,375 + DDA3937_RS01715 0.66 -0.3 380,421 - +0.1 380,421 - DDA3937_RS01715 0.71 -0.2 380,636 + -1.5 380,672 + -0.3 381,111 + +0.7 381,112 - +0.7 381,201 - +0.1 381,284 + +0.7 381,284 + -0.3 381,285 - +0.5 381,298 + -1.6 381,299 - -0.3 381,299 - +0.1 381,299 - -1.0 381,299 - +0.0 381,299 - -0.5 381,328 + -0.3 381,328 + +0.9 381,328 + -0.3 381,328 + +0.6 381,329 - +0.3 381,329 - +0.2 381,329 - -0.2 381,329 - -2.2 381,329 - -0.4 381,329 - -0.5 381,360 - -0.2 381,411 - -0.6 381,411 - -0.3 381,411 - +1.1 381,413 + -0.1 381,413 + -1.2 381,413 + -0.5 381,414 - +0.5 381,415 + -0.8 381,415 + -0.9 381,415 + -0.2 381,415 + -0.9 381,415 + -0.3 381,415 + -0.4 381,415 + -0.0 381,416 - -1.3 381,416 - +1.7 381,416 - -0.6 381,416 - +0.5 381,416 - +1.1 381,416 - -0.0 381,420 - -0.7 381,420 - +0.2 381,420 - +0.2 381,435 + +0.5 381,435 + -0.1 381,436 - -0.8 381,465 - +2.2 381,465 - DDA3937_RS01720 0.13 -0.6 381,466 + DDA3937_RS01720 0.13 -0.1 381,467 - DDA3937_RS01720 0.13 -0.3 381,467 - DDA3937_RS01720 0.13 +1.0 381,468 + DDA3937_RS01720 0.13 +0.8 381,468 + DDA3937_RS01720 0.13 -0.4 381,468 + DDA3937_RS01720 0.13 -0.2 381,468 + DDA3937_RS01720 0.13 +0.3 381,468 + DDA3937_RS01720 0.13 -0.9 381,468 + DDA3937_RS01720 0.13 -0.0 381,468 + DDA3937_RS01720 0.13 +1.2 381,468 + DDA3937_RS01720 0.13 -0.1 381,468 + DDA3937_RS01720 0.13 -0.5 381,469 - DDA3937_RS01720 0.13 +0.7 381,469 - DDA3937_RS01720 0.13 +1.2 381,469 - DDA3937_RS01720 0.13 +0.4 381,469 - -1.9 381,469 - DDA3937_RS01720 0.13 +0.4 381,469 - DDA3937_RS01720 0.13 -0.2 381,469 - DDA3937_RS01720 0.13 -0.8 381,469 - DDA3937_RS01720 0.13 +0.0 381,469 - DDA3937_RS01720 0.13 +1.4 381,470 + DDA3937_RS01720 0.14 +0.4 381,470 + DDA3937_RS01720 0.14 -0.3 381,471 - DDA3937_RS01720 0.14 -0.3 381,471 - DDA3937_RS01720 0.14 -0.7 381,471 - DDA3937_RS01720 0.14 +0.4 381,479 + DDA3937_RS01720 0.15 +0.3 381,483 - DDA3937_RS01720 0.15 -0.7 381,491 + +0.2 381,492 - DDA3937_RS01720 0.16 -0.7 381,506 - DDA3937_RS01720 0.18 +1.3 381,569 + DDA3937_RS01720 0.26 -1.7 381,584 + DDA3937_RS01720 0.28 -0.2 381,584 + DDA3937_RS01720 0.28 -1.3 381,621 - +1.2 381,623 + DDA3937_RS01720 0.32 -0.4 381,623 + DDA3937_RS01720 0.32 -0.1 381,623 + DDA3937_RS01720 0.32 -0.4 381,623 + DDA3937_RS01720 0.32 -0.1 381,624 - DDA3937_RS01720 0.33 -1.9 381,624 - DDA3937_RS01720 0.33 +0.3 381,624 - DDA3937_RS01720 0.33 -2.5 381,626 + DDA3937_RS01720 0.33 +0.7 381,626 + DDA3937_RS01720 0.33 +1.4 381,626 + DDA3937_RS01720 0.33 +0.2 381,626 + DDA3937_RS01720 0.33 -0.3 381,626 + DDA3937_RS01720 0.33 +0.7 381,626 + DDA3937_RS01720 0.33 +0.5 381,627 - DDA3937_RS01720 0.33 -0.6 381,657 + DDA3937_RS01720 0.37 -0.4 381,658 - DDA3937_RS01720 0.37 -0.1 381,658 - DDA3937_RS01720 0.37 -0.3 381,662 + DDA3937_RS01720 0.37 -0.1 381,669 + DDA3937_RS01720 0.38 +0.7 381,669 + DDA3937_RS01720 0.38 -1.3 381,671 + DDA3937_RS01720 0.38 -0.6 381,672 - DDA3937_RS01720 0.39 +1.4 381,672 - DDA3937_RS01720 0.39 -0.1
Or see this region's nucleotide sequence