Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01670 and DDA3937_RS01675 are separated by 93 nucleotides DDA3937_RS01675 and DDA3937_RS01680 are separated by 236 nucleotides DDA3937_RS01680 and DDA3937_RS01685 overlap by 4 nucleotides
DDA3937_RS01670: DDA3937_RS01670 - TIGR01212 family radical SAM protein, at 369,641 to 370,570
_RS01670
DDA3937_RS01675: DDA3937_RS01675 - aerobic respiration two-component sensor histidine kinase ArcB, at 370,664 to 373,003
_RS01675
DDA3937_RS01680: DDA3937_RS01680 - isoprenoid biosynthesis glyoxalase ElbB, at 373,240 to 373,893
_RS01680
DDA3937_RS01685: DDA3937_RS01685 - monofunctional biosynthetic peptidoglycan transglycosylase, at 373,890 to 374,639
_RS01685
Position (kb) 370
371
372
373
374 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 369.664 kb on + strand at 369.664 kb on + strand at 369.664 kb on + strand at 369.664 kb on + strand at 369.665 kb on - strand at 369.665 kb on - strand at 369.665 kb on - strand at 369.709 kb on + strand at 369.733 kb on + strand at 369.733 kb on + strand at 369.734 kb on - strand, within DDA3937_RS01670 at 369.734 kb on - strand, within DDA3937_RS01670 at 369.734 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.878 kb on + strand, within DDA3937_RS01670 at 369.878 kb on + strand, within DDA3937_RS01670 at 369.888 kb on - strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.902 kb on - strand, within DDA3937_RS01670 at 369.911 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 370.013 kb on - strand, within DDA3937_RS01670 at 370.037 kb on + strand, within DDA3937_RS01670 at 370.173 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.412 kb on + strand, within DDA3937_RS01670 at 370.413 kb on - strand, within DDA3937_RS01670 at 370.413 kb on - strand, within DDA3937_RS01670 at 370.420 kb on + strand, within DDA3937_RS01670 at 370.420 kb on + strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.505 kb on + strand at 370.506 kb on - strand at 370.568 kb on + strand at 370.568 kb on + strand at 370.569 kb on - strand at 370.629 kb on + strand at 370.644 kb on + strand at 370.645 kb on - strand at 370.663 kb on + strand at 370.691 kb on + strand at 370.691 kb on + strand at 370.692 kb on - strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.695 kb on - strand at 370.704 kb on + strand at 370.705 kb on - strand at 370.705 kb on - strand at 370.837 kb on + strand at 370.838 kb on - strand at 370.852 kb on - strand at 370.875 kb on - strand at 370.875 kb on - strand at 370.875 kb on - strand at 371.284 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.458 kb on + strand, within DDA3937_RS01675 at 371.459 kb on - strand, within DDA3937_RS01675 at 371.470 kb on + strand, within DDA3937_RS01675 at 371.470 kb on + strand, within DDA3937_RS01675 at 371.509 kb on + strand at 371.548 kb on + strand, within DDA3937_RS01675 at 371.548 kb on + strand, within DDA3937_RS01675 at 371.558 kb on - strand, within DDA3937_RS01675 at 371.582 kb on - strand, within DDA3937_RS01675 at 371.621 kb on + strand, within DDA3937_RS01675 at 371.621 kb on + strand, within DDA3937_RS01675 at 371.622 kb on - strand, within DDA3937_RS01675 at 371.650 kb on + strand, within DDA3937_RS01675 at 371.650 kb on + strand, within DDA3937_RS01675 at 371.650 kb on + strand, within DDA3937_RS01675 at 371.651 kb on - strand, within DDA3937_RS01675 at 371.788 kb on + strand, within DDA3937_RS01675 at 371.788 kb on + strand, within DDA3937_RS01675 at 371.788 kb on + strand, within DDA3937_RS01675 at 371.789 kb on - strand, within DDA3937_RS01675 at 371.789 kb on - strand, within DDA3937_RS01675 at 371.789 kb on - strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.026 kb on + strand, within DDA3937_RS01675 at 372.026 kb on + strand, within DDA3937_RS01675 at 372.026 kb on + strand, within DDA3937_RS01675 at 372.027 kb on - strand, within DDA3937_RS01675 at 372.263 kb on - strand at 372.352 kb on + strand, within DDA3937_RS01675 at 372.352 kb on + strand, within DDA3937_RS01675 at 372.393 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.513 kb on - strand, within DDA3937_RS01675 at 372.513 kb on - strand, within DDA3937_RS01675 at 372.544 kb on + strand, within DDA3937_RS01675 at 372.544 kb on + strand, within DDA3937_RS01675 at 372.588 kb on - strand, within DDA3937_RS01675 at 372.657 kb on + strand, within DDA3937_RS01675 at 372.657 kb on + strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.894 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.966 kb on + strand at 372.966 kb on + strand at 372.967 kb on - strand at 373.031 kb on + strand at 373.088 kb on - strand at 373.131 kb on + strand at 373.131 kb on + strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.211 kb on - strand at 373.220 kb on - strand at 373.260 kb on - strand at 373.260 kb on - strand at 373.279 kb on + strand at 373.279 kb on + strand at 373.632 kb on - strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.677 kb on + strand, within DDA3937_RS01680 at 373.692 kb on + strand, within DDA3937_RS01680 at 373.693 kb on - strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.814 kb on - strand, within DDA3937_RS01680 at 373.907 kb on - strand at 373.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 369,664 + +0.8 369,664 + +0.6 369,664 + -0.8 369,664 + -1.5 369,665 - -1.8 369,665 - -0.4 369,665 - +0.2 369,709 + -0.4 369,733 + -0.1 369,733 + +1.0 369,734 - DDA3937_RS01670 0.10 -0.6 369,734 - DDA3937_RS01670 0.10 +0.6 369,734 - DDA3937_RS01670 0.10 -1.1 369,776 - DDA3937_RS01670 0.15 -0.8 369,776 - DDA3937_RS01670 0.15 -0.5 369,776 - DDA3937_RS01670 0.15 -0.9 369,776 - DDA3937_RS01670 0.15 +0.6 369,776 - DDA3937_RS01670 0.15 +0.6 369,776 - DDA3937_RS01670 0.15 -2.3 369,878 + DDA3937_RS01670 0.25 +1.0 369,878 + DDA3937_RS01670 0.25 -0.9 369,888 - DDA3937_RS01670 0.27 -0.6 369,899 + DDA3937_RS01670 0.28 +0.0 369,899 + DDA3937_RS01670 0.28 +0.3 369,899 + DDA3937_RS01670 0.28 -0.9 369,900 - DDA3937_RS01670 0.28 +0.1 369,900 - DDA3937_RS01670 0.28 +0.6 369,900 - DDA3937_RS01670 0.28 +0.2 369,901 + DDA3937_RS01670 0.28 +0.1 369,901 + DDA3937_RS01670 0.28 -0.4 369,901 + DDA3937_RS01670 0.28 -0.6 369,902 - DDA3937_RS01670 0.28 -0.1 369,911 + DDA3937_RS01670 0.29 -0.6 369,941 + DDA3937_RS01670 0.32 +0.4 369,941 + DDA3937_RS01670 0.32 +0.2 369,941 + DDA3937_RS01670 0.32 +0.2 369,942 - DDA3937_RS01670 0.32 +0.2 369,942 - DDA3937_RS01670 0.32 -0.6 369,942 - DDA3937_RS01670 0.32 -0.0 369,942 - DDA3937_RS01670 0.32 +0.4 370,013 - DDA3937_RS01670 0.40 -1.4 370,037 + DDA3937_RS01670 0.43 -1.8 370,173 + DDA3937_RS01670 0.57 +0.3 370,361 + DDA3937_RS01670 0.77 -0.0 370,361 + DDA3937_RS01670 0.77 -0.4 370,361 + DDA3937_RS01670 0.77 +1.0 370,362 - DDA3937_RS01670 0.78 +0.0 370,362 - DDA3937_RS01670 0.78 +1.6 370,362 - DDA3937_RS01670 0.78 -0.5 370,362 - DDA3937_RS01670 0.78 -2.4 370,362 - DDA3937_RS01670 0.78 -2.5 370,362 - DDA3937_RS01670 0.78 -0.4 370,412 + DDA3937_RS01670 0.83 +1.1 370,413 - DDA3937_RS01670 0.83 +0.4 370,413 - DDA3937_RS01670 0.83 +0.9 370,420 + DDA3937_RS01670 0.84 +0.2 370,420 + DDA3937_RS01670 0.84 -0.5 370,421 - DDA3937_RS01670 0.84 +1.3 370,421 - DDA3937_RS01670 0.84 -1.1 370,421 - DDA3937_RS01670 0.84 +2.1 370,505 + +0.3 370,506 - -0.7 370,568 + +0.5 370,568 + -0.9 370,569 - -0.1 370,629 + +0.1 370,644 + +0.4 370,645 - -0.2 370,663 + +0.5 370,691 + -2.5 370,691 + +0.4 370,692 - +0.0 370,694 + -0.3 370,694 + +0.5 370,694 + -0.6 370,694 + +0.5 370,694 + +0.6 370,694 + +0.3 370,695 - +0.0 370,704 + +0.1 370,705 - -1.2 370,705 - +0.5 370,837 + -0.0 370,838 - -0.5 370,852 - -0.0 370,875 - +0.0 370,875 - +2.0 370,875 - +1.9 371,284 + DDA3937_RS01675 0.26 -0.9 371,345 + DDA3937_RS01675 0.29 -0.3 371,345 + DDA3937_RS01675 0.29 +0.6 371,345 + DDA3937_RS01675 0.29 +0.6 371,346 - DDA3937_RS01675 0.29 +0.4 371,346 - DDA3937_RS01675 0.29 +0.5 371,346 - DDA3937_RS01675 0.29 -0.9 371,346 - DDA3937_RS01675 0.29 +1.1 371,458 + DDA3937_RS01675 0.34 -0.2 371,459 - DDA3937_RS01675 0.34 -0.5 371,470 + DDA3937_RS01675 0.34 -0.9 371,470 + DDA3937_RS01675 0.34 +0.3 371,509 + -0.4 371,548 + DDA3937_RS01675 0.38 -1.6 371,548 + DDA3937_RS01675 0.38 +1.4 371,558 - DDA3937_RS01675 0.38 +0.5 371,582 - DDA3937_RS01675 0.39 +0.2 371,621 + DDA3937_RS01675 0.41 -0.2 371,621 + DDA3937_RS01675 0.41 -0.8 371,622 - DDA3937_RS01675 0.41 -0.5 371,650 + DDA3937_RS01675 0.42 +0.3 371,650 + DDA3937_RS01675 0.42 +1.3 371,650 + DDA3937_RS01675 0.42 -0.7 371,651 - DDA3937_RS01675 0.42 -0.1 371,788 + DDA3937_RS01675 0.48 -0.6 371,788 + DDA3937_RS01675 0.48 +1.0 371,788 + DDA3937_RS01675 0.48 +1.1 371,789 - DDA3937_RS01675 0.48 -1.8 371,789 - DDA3937_RS01675 0.48 -0.4 371,789 - DDA3937_RS01675 0.48 -0.6 371,810 + DDA3937_RS01675 0.49 +0.7 371,810 + DDA3937_RS01675 0.49 +1.2 371,810 + DDA3937_RS01675 0.49 +0.7 371,810 + DDA3937_RS01675 0.49 +0.6 371,810 + DDA3937_RS01675 0.49 +0.4 371,810 + DDA3937_RS01675 0.49 +0.7 371,810 + DDA3937_RS01675 0.49 +1.1 371,810 + +2.0 371,810 + DDA3937_RS01675 0.49 +1.2 371,810 + DDA3937_RS01675 0.49 +0.9 371,810 + DDA3937_RS01675 0.49 +0.8 371,811 - DDA3937_RS01675 0.49 +1.0 371,811 - DDA3937_RS01675 0.49 -0.6 371,811 - DDA3937_RS01675 0.49 -0.9 371,811 - DDA3937_RS01675 0.49 -0.9 371,811 - DDA3937_RS01675 0.49 -0.1 371,811 - DDA3937_RS01675 0.49 -0.9 372,023 + DDA3937_RS01675 0.58 +0.8 372,023 + DDA3937_RS01675 0.58 +0.6 372,023 + DDA3937_RS01675 0.58 +2.6 372,023 + DDA3937_RS01675 0.58 +0.8 372,023 + DDA3937_RS01675 0.58 +0.6 372,024 - DDA3937_RS01675 0.58 +0.3 372,024 - DDA3937_RS01675 0.58 -1.0 372,024 - DDA3937_RS01675 0.58 +1.1 372,024 - DDA3937_RS01675 0.58 +0.4 372,024 - DDA3937_RS01675 0.58 +1.0 372,026 + DDA3937_RS01675 0.58 +0.9 372,026 + DDA3937_RS01675 0.58 +0.6 372,026 + DDA3937_RS01675 0.58 +1.9 372,027 - DDA3937_RS01675 0.58 +1.2 372,263 - +1.2 372,352 + DDA3937_RS01675 0.72 +0.6 372,352 + DDA3937_RS01675 0.72 +0.3 372,393 + DDA3937_RS01675 0.74 +0.5 372,512 + DDA3937_RS01675 0.79 +1.1 372,512 + DDA3937_RS01675 0.79 +1.2 372,512 + DDA3937_RS01675 0.79 +0.6 372,513 - DDA3937_RS01675 0.79 +1.0 372,513 - DDA3937_RS01675 0.79 -0.8 372,544 + DDA3937_RS01675 0.80 +0.6 372,544 + DDA3937_RS01675 0.80 +0.6 372,588 - DDA3937_RS01675 0.82 -0.1 372,657 + DDA3937_RS01675 0.85 +1.0 372,657 + DDA3937_RS01675 0.85 +1.0 372,658 - DDA3937_RS01675 0.85 -0.4 372,658 - DDA3937_RS01675 0.85 -0.0 372,658 - DDA3937_RS01675 0.85 -0.2 372,658 - DDA3937_RS01675 0.85 -0.7 372,683 + DDA3937_RS01675 0.86 +0.3 372,683 + DDA3937_RS01675 0.86 +1.5 372,683 + DDA3937_RS01675 0.86 +1.3 372,683 + DDA3937_RS01675 0.86 +0.8 372,683 + DDA3937_RS01675 0.86 +0.5 372,894 + +1.2 372,915 + +0.8 372,915 + +1.3 372,915 + +0.7 372,915 + +0.6 372,915 + +2.9 372,915 + +1.3 372,915 + +1.0 372,915 + +0.7 372,915 + +1.0 372,916 - +0.4 372,916 - -1.4 372,916 - -0.9 372,916 - +0.2 372,916 - -0.2 372,916 - +0.2 372,916 - +0.1 372,916 - +1.2 372,966 + +2.2 372,966 + +1.5 372,967 - +0.3 373,031 + +2.0 373,088 - +2.1 373,131 + +1.7 373,131 + +1.9 373,132 - +1.6 373,132 - +2.0 373,132 - +1.9 373,132 - +1.9 373,138 + +1.8 373,138 + +2.7 373,138 + +1.9 373,138 + +2.1 373,139 - +1.9 373,139 - +2.0 373,139 - +2.7 373,179 + +2.2 373,179 + +1.6 373,179 + +1.9 373,179 + +2.1 373,179 + +1.9 373,179 + +1.9 373,180 - +0.6 373,180 - +1.4 373,180 - +1.7 373,180 - +1.0 373,180 - +1.1 373,211 - -1.1 373,220 - +0.6 373,260 - -0.7 373,260 - -0.5 373,279 + +0.5 373,279 + +0.6 373,632 - DDA3937_RS01680 0.60 -0.2 373,644 + DDA3937_RS01680 0.62 -0.5 373,644 + DDA3937_RS01680 0.62 +0.8 373,677 + DDA3937_RS01680 0.67 +0.3 373,692 + DDA3937_RS01680 0.69 -0.6 373,693 - DDA3937_RS01680 0.69 -1.4 373,763 + DDA3937_RS01680 0.80 +0.1 373,763 + DDA3937_RS01680 0.80 -0.2 373,813 + DDA3937_RS01680 0.88 +0.4 373,813 + DDA3937_RS01680 0.88 -0.4 373,813 + -1.7 373,813 + DDA3937_RS01680 0.88 +0.8 373,813 + DDA3937_RS01680 0.88 +0.2 373,813 + DDA3937_RS01680 0.88 -0.3 373,813 + DDA3937_RS01680 0.88 +0.0 373,814 - DDA3937_RS01680 0.88 +0.2 373,907 - -0.9 373,907 - -1.4
Or see this region's nucleotide sequence