Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01525

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01515 and DDA3937_RS01520 are separated by 148 nucleotidesDDA3937_RS01520 and DDA3937_RS01525 are separated by 93 nucleotidesDDA3937_RS01525 and DDA3937_RS01530 are separated by 24 nucleotides DDA3937_RS01515: DDA3937_RS01515 - RNase adapter RapZ, at 339,044 to 339,898 _RS01515 DDA3937_RS01520: DDA3937_RS01520 - PTS IIA-like nitrogen regulatory protein PtsN, at 340,047 to 340,535 _RS01520 DDA3937_RS01525: DDA3937_RS01525 - ribosome hibernation promoting factor, at 340,629 to 340,916 _RS01525 DDA3937_RS01530: DDA3937_RS01530 - RNA polymerase factor sigma-54, at 340,941 to 342,374 _RS01530 Position (kb) 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 339.629 kb on - strand, within DDA3937_RS01515at 339.754 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.812 kb on + strand, within DDA3937_RS01515at 339.813 kb on - strandat 339.813 kb on - strandat 339.813 kb on - strandat 339.813 kb on - strandat 339.813 kb on - strandat 339.813 kb on - strandat 339.819 kb on + strandat 339.819 kb on + strandat 339.819 kb on + strandat 339.820 kb on - strandat 339.948 kb on + strandat 339.948 kb on + strandat 339.948 kb on + strandat 339.952 kb on + strandat 339.953 kb on - strandat 339.953 kb on - strandat 340.088 kb on - strandat 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.169 kb on + strand, within DDA3937_RS01520at 340.170 kb on - strand, within DDA3937_RS01520at 340.170 kb on - strand, within DDA3937_RS01520at 340.170 kb on - strand, within DDA3937_RS01520at 340.170 kb on - strand, within DDA3937_RS01520at 340.170 kb on - strand, within DDA3937_RS01520at 340.170 kb on - strand, within DDA3937_RS01520at 340.170 kb on - strand, within DDA3937_RS01520at 340.173 kb on + strand, within DDA3937_RS01520at 340.173 kb on + strand, within DDA3937_RS01520at 340.173 kb on + strand, within DDA3937_RS01520at 340.174 kb on - strand, within DDA3937_RS01520at 340.174 kb on - strand, within DDA3937_RS01520at 340.174 kb on - strand, within DDA3937_RS01520at 340.184 kb on + strand, within DDA3937_RS01520at 340.184 kb on + strand, within DDA3937_RS01520at 340.185 kb on - strand, within DDA3937_RS01520at 340.185 kb on - strand, within DDA3937_RS01520at 340.185 kb on - strand, within DDA3937_RS01520at 340.298 kb on + strand, within DDA3937_RS01520at 340.298 kb on + strand, within DDA3937_RS01520at 340.299 kb on - strand, within DDA3937_RS01520at 340.508 kb on + strandat 340.509 kb on - strandat 340.509 kb on - strandat 340.538 kb on + strandat 340.538 kb on + strandat 340.539 kb on - strandat 340.539 kb on - strandat 340.539 kb on - strandat 340.549 kb on - strandat 340.565 kb on + strandat 340.565 kb on + strandat 340.566 kb on - strandat 340.566 kb on - strandat 340.566 kb on - strandat 340.566 kb on - strandat 340.646 kb on + strandat 340.646 kb on + strandat 340.652 kb on + strandat 340.652 kb on + strandat 340.653 kb on - strandat 340.653 kb on - strandat 340.653 kb on - strandat 340.663 kb on - strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.705 kb on + strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.706 kb on - strand, within DDA3937_RS01525at 340.709 kb on + strand, within DDA3937_RS01525at 340.709 kb on + strand, within DDA3937_RS01525at 340.709 kb on + strandat 340.709 kb on + strand, within DDA3937_RS01525at 340.709 kb on + strand, within DDA3937_RS01525at 340.709 kb on + strand, within DDA3937_RS01525at 340.710 kb on - strand, within DDA3937_RS01525at 340.710 kb on - strand, within DDA3937_RS01525at 340.710 kb on - strand, within DDA3937_RS01525at 340.710 kb on - strand, within DDA3937_RS01525at 340.710 kb on - strand, within DDA3937_RS01525at 340.804 kb on + strand, within DDA3937_RS01525at 340.804 kb on + strand, within DDA3937_RS01525at 340.804 kb on + strand, within DDA3937_RS01525at 340.804 kb on + strand, within DDA3937_RS01525at 340.805 kb on - strand, within DDA3937_RS01525at 340.805 kb on - strand, within DDA3937_RS01525at 340.805 kb on - strand, within DDA3937_RS01525at 340.805 kb on - strand, within DDA3937_RS01525at 340.805 kb on - strand, within DDA3937_RS01525at 340.805 kb on - strand, within DDA3937_RS01525at 340.828 kb on + strand, within DDA3937_RS01525at 340.829 kb on - strand, within DDA3937_RS01525at 340.829 kb on - strand, within DDA3937_RS01525at 340.829 kb on - strand, within DDA3937_RS01525at 340.829 kb on - strand, within DDA3937_RS01525at 340.851 kb on + strand, within DDA3937_RS01525at 340.857 kb on + strand, within DDA3937_RS01525at 340.907 kb on + strandat 340.908 kb on - strandat 340.908 kb on - strandat 340.916 kb on + strandat 340.917 kb on - strandat 340.935 kb on + strandat 340.936 kb on - strandat 340.936 kb on - strandat 340.976 kb on + strandat 340.976 kb on + strandat 340.980 kb on + strandat 340.993 kb on + strandat 341.174 kb on - strand, within DDA3937_RS01530at 341.223 kb on + strand, within DDA3937_RS01530at 341.361 kb on - strand, within DDA3937_RS01530at 341.467 kb on + strand, within DDA3937_RS01530at 341.504 kb on + strand, within DDA3937_RS01530at 341.507 kb on + strand, within DDA3937_RS01530at 341.563 kb on + strand, within DDA3937_RS01530at 341.563 kb on + strand, within DDA3937_RS01530at 341.564 kb on - strandat 341.652 kb on - strand, within DDA3937_RS01530at 341.829 kb on + strand, within DDA3937_RS01530at 341.830 kb on - strand, within DDA3937_RS01530

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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339,629 - DDA3937_RS01515 0.68 +1.0
339,754 + DDA3937_RS01515 0.83 +0.8
339,812 + DDA3937_RS01515 0.90 +0.8
339,812 + DDA3937_RS01515 0.90 +0.2
339,812 + DDA3937_RS01515 0.90 +0.1
339,812 + DDA3937_RS01515 0.90 +0.8
339,812 + DDA3937_RS01515 0.90 +0.5
339,812 + DDA3937_RS01515 0.90 +0.4
339,812 + DDA3937_RS01515 0.90 +0.9
339,812 + DDA3937_RS01515 0.90 +1.0
339,812 + DDA3937_RS01515 0.90 +0.5
339,813 - +0.4
339,813 - +0.5
339,813 - +0.4
339,813 - +0.6
339,813 - +1.7
339,813 - +2.1
339,819 + +0.7
339,819 + +1.9
339,819 + +1.4
339,820 - +0.3
339,948 + +0.9
339,948 + +1.1
339,948 + +1.0
339,952 + -0.0
339,953 - +1.2
339,953 - -0.1
340,088 - -1.3
340,169 + DDA3937_RS01520 0.25 -0.4
340,169 + DDA3937_RS01520 0.25 -0.8
340,169 + DDA3937_RS01520 0.25 +0.2
340,169 + DDA3937_RS01520 0.25 -0.7
340,169 + DDA3937_RS01520 0.25 -1.3
340,169 + DDA3937_RS01520 0.25 -1.9
340,169 + DDA3937_RS01520 0.25 +0.7
340,169 + DDA3937_RS01520 0.25 +0.7
340,169 + DDA3937_RS01520 0.25 +0.2
340,170 - DDA3937_RS01520 0.25 -1.5
340,170 - DDA3937_RS01520 0.25 -1.6
340,170 - DDA3937_RS01520 0.25 -0.8
340,170 - DDA3937_RS01520 0.25 -1.1
340,170 - DDA3937_RS01520 0.25 -0.2
340,170 - DDA3937_RS01520 0.25 -1.1
340,170 - DDA3937_RS01520 0.25 -1.3
340,173 + DDA3937_RS01520 0.26 +0.2
340,173 + DDA3937_RS01520 0.26 -2.1
340,173 + DDA3937_RS01520 0.26 -0.2
340,174 - DDA3937_RS01520 0.26 +1.9
340,174 - DDA3937_RS01520 0.26 -0.9
340,174 - DDA3937_RS01520 0.26 +0.1
340,184 + DDA3937_RS01520 0.28 -0.5
340,184 + DDA3937_RS01520 0.28 +0.5
340,185 - DDA3937_RS01520 0.28 -0.3
340,185 - DDA3937_RS01520 0.28 +0.2
340,185 - DDA3937_RS01520 0.28 -1.2
340,298 + DDA3937_RS01520 0.51 -1.4
340,298 + DDA3937_RS01520 0.51 -0.3
340,299 - DDA3937_RS01520 0.52 -0.9
340,508 + +1.0
340,509 - -0.3
340,509 - -1.0
340,538 + +1.3
340,538 + -1.1
340,539 - +0.3
340,539 - -0.0
340,539 - -1.0
340,549 - -1.6
340,565 + -0.3
340,565 + -0.3
340,566 - +0.1
340,566 - -0.7
340,566 - +0.7
340,566 - -0.0
340,646 + +0.2
340,646 + -1.7
340,652 + +1.1
340,652 + -0.1
340,653 - -2.3
340,653 - -0.1
340,653 - -2.1
340,663 - DDA3937_RS01525 0.12 -1.6
340,705 + DDA3937_RS01525 0.26 -0.2
340,705 + DDA3937_RS01525 0.26 +0.2
340,705 + DDA3937_RS01525 0.26 -0.6
340,705 + DDA3937_RS01525 0.26 -0.8
340,705 + DDA3937_RS01525 0.26 -0.7
340,705 + DDA3937_RS01525 0.26 -0.2
340,705 + DDA3937_RS01525 0.26 -0.4
340,705 + DDA3937_RS01525 0.26 -0.2
340,705 + DDA3937_RS01525 0.26 -1.1
340,706 - DDA3937_RS01525 0.27 -0.8
340,706 - DDA3937_RS01525 0.27 +0.6
340,706 - DDA3937_RS01525 0.27 -1.3
340,706 - DDA3937_RS01525 0.27 -0.6
340,706 - DDA3937_RS01525 0.27 -1.7
340,706 - DDA3937_RS01525 0.27 -0.3
340,706 - DDA3937_RS01525 0.27 -0.3
340,706 - DDA3937_RS01525 0.27 -0.6
340,709 + DDA3937_RS01525 0.28 -0.5
340,709 + DDA3937_RS01525 0.28 -0.6
340,709 + -0.3
340,709 + DDA3937_RS01525 0.28 -0.3
340,709 + DDA3937_RS01525 0.28 -1.7
340,709 + DDA3937_RS01525 0.28 -0.6
340,710 - DDA3937_RS01525 0.28 +1.1
340,710 - DDA3937_RS01525 0.28 -0.7
340,710 - DDA3937_RS01525 0.28 -0.6
340,710 - DDA3937_RS01525 0.28 -1.7
340,710 - DDA3937_RS01525 0.28 -1.1
340,804 + DDA3937_RS01525 0.61 -0.1
340,804 + DDA3937_RS01525 0.61 -0.3
340,804 + DDA3937_RS01525 0.61 -1.2
340,804 + DDA3937_RS01525 0.61 +0.1
340,805 - DDA3937_RS01525 0.61 -1.9
340,805 - DDA3937_RS01525 0.61 -0.1
340,805 - DDA3937_RS01525 0.61 -0.3
340,805 - DDA3937_RS01525 0.61 -0.6
340,805 - DDA3937_RS01525 0.61 -1.7
340,805 - DDA3937_RS01525 0.61 -1.9
340,828 + DDA3937_RS01525 0.69 -1.1
340,829 - DDA3937_RS01525 0.69 -0.7
340,829 - DDA3937_RS01525 0.69 -0.7
340,829 - DDA3937_RS01525 0.69 -2.3
340,829 - DDA3937_RS01525 0.69 -1.9
340,851 + DDA3937_RS01525 0.77 -0.1
340,857 + DDA3937_RS01525 0.79 -1.7
340,907 + -2.0
340,908 - -0.7
340,908 - -2.3
340,916 + -1.4
340,917 - -1.3
340,935 + -0.6
340,936 - -0.3
340,936 - -1.0
340,976 + +0.9
340,976 + +1.7
340,980 + -0.9
340,993 + -0.1
341,174 - DDA3937_RS01530 0.16 -0.2
341,223 + DDA3937_RS01530 0.20 -0.9
341,361 - DDA3937_RS01530 0.29 +1.5
341,467 + DDA3937_RS01530 0.37 -0.7
341,504 + DDA3937_RS01530 0.39 +0.2
341,507 + DDA3937_RS01530 0.39 -1.3
341,563 + DDA3937_RS01530 0.43 -2.8
341,563 + DDA3937_RS01530 0.43 +0.9
341,564 - -1.7
341,652 - DDA3937_RS01530 0.50 -1.3
341,829 + DDA3937_RS01530 0.62 -2.1
341,830 - DDA3937_RS01530 0.62 +0.3

Or see this region's nucleotide sequence