Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01515 and DDA3937_RS01520 are separated by 148 nucleotides DDA3937_RS01520 and DDA3937_RS01525 are separated by 93 nucleotides DDA3937_RS01525 and DDA3937_RS01530 are separated by 24 nucleotides
DDA3937_RS01515: DDA3937_RS01515 - RNase adapter RapZ, at 339,044 to 339,898
_RS01515
DDA3937_RS01520: DDA3937_RS01520 - PTS IIA-like nitrogen regulatory protein PtsN, at 340,047 to 340,535
_RS01520
DDA3937_RS01525: DDA3937_RS01525 - ribosome hibernation promoting factor, at 340,629 to 340,916
_RS01525
DDA3937_RS01530: DDA3937_RS01530 - RNA polymerase factor sigma-54, at 340,941 to 342,374
_RS01530
Position (kb) 340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.629 kb on - strand, within DDA3937_RS01515 at 339.754 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.812 kb on + strand, within DDA3937_RS01515 at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.813 kb on - strand at 339.819 kb on + strand at 339.819 kb on + strand at 339.819 kb on + strand at 339.820 kb on - strand at 339.948 kb on + strand at 339.948 kb on + strand at 339.948 kb on + strand at 339.952 kb on + strand at 339.953 kb on - strand at 339.953 kb on - strand at 340.088 kb on - strand at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.299 kb on - strand, within DDA3937_RS01520 at 340.508 kb on + strand at 340.509 kb on - strand at 340.509 kb on - strand at 340.538 kb on + strand at 340.538 kb on + strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.549 kb on - strand at 340.565 kb on + strand at 340.565 kb on + strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.646 kb on + strand at 340.646 kb on + strand at 340.652 kb on + strand at 340.652 kb on + strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.663 kb on - strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.828 kb on + strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.851 kb on + strand, within DDA3937_RS01525 at 340.857 kb on + strand, within DDA3937_RS01525 at 340.907 kb on + strand at 340.908 kb on - strand at 340.908 kb on - strand at 340.916 kb on + strand at 340.917 kb on - strand at 340.935 kb on + strand at 340.936 kb on - strand at 340.936 kb on - strand at 340.976 kb on + strand at 340.976 kb on + strand at 340.980 kb on + strand at 340.993 kb on + strand at 341.174 kb on - strand, within DDA3937_RS01530 at 341.223 kb on + strand, within DDA3937_RS01530 at 341.361 kb on - strand, within DDA3937_RS01530 at 341.467 kb on + strand, within DDA3937_RS01530 at 341.504 kb on + strand, within DDA3937_RS01530 at 341.507 kb on + strand, within DDA3937_RS01530 at 341.563 kb on + strand, within DDA3937_RS01530 at 341.563 kb on + strand, within DDA3937_RS01530 at 341.564 kb on - strand at 341.652 kb on - strand, within DDA3937_RS01530 at 341.829 kb on + strand, within DDA3937_RS01530 at 341.830 kb on - strand, within DDA3937_RS01530
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 339,629 - DDA3937_RS01515 0.68 +1.0 339,754 + DDA3937_RS01515 0.83 +0.8 339,812 + DDA3937_RS01515 0.90 +0.8 339,812 + DDA3937_RS01515 0.90 +0.2 339,812 + DDA3937_RS01515 0.90 +0.1 339,812 + DDA3937_RS01515 0.90 +0.8 339,812 + DDA3937_RS01515 0.90 +0.5 339,812 + DDA3937_RS01515 0.90 +0.4 339,812 + DDA3937_RS01515 0.90 +0.9 339,812 + DDA3937_RS01515 0.90 +1.0 339,812 + DDA3937_RS01515 0.90 +0.5 339,813 - +0.4 339,813 - +0.5 339,813 - +0.4 339,813 - +0.6 339,813 - +1.7 339,813 - +2.1 339,819 + +0.7 339,819 + +1.9 339,819 + +1.4 339,820 - +0.3 339,948 + +0.9 339,948 + +1.1 339,948 + +1.0 339,952 + -0.0 339,953 - +1.2 339,953 - -0.1 340,088 - -1.3 340,169 + DDA3937_RS01520 0.25 -0.4 340,169 + DDA3937_RS01520 0.25 -0.8 340,169 + DDA3937_RS01520 0.25 +0.2 340,169 + DDA3937_RS01520 0.25 -0.7 340,169 + DDA3937_RS01520 0.25 -1.3 340,169 + DDA3937_RS01520 0.25 -1.9 340,169 + DDA3937_RS01520 0.25 +0.7 340,169 + DDA3937_RS01520 0.25 +0.7 340,169 + DDA3937_RS01520 0.25 +0.2 340,170 - DDA3937_RS01520 0.25 -1.5 340,170 - DDA3937_RS01520 0.25 -1.6 340,170 - DDA3937_RS01520 0.25 -0.8 340,170 - DDA3937_RS01520 0.25 -1.1 340,170 - DDA3937_RS01520 0.25 -0.2 340,170 - DDA3937_RS01520 0.25 -1.1 340,170 - DDA3937_RS01520 0.25 -1.3 340,173 + DDA3937_RS01520 0.26 +0.2 340,173 + DDA3937_RS01520 0.26 -2.1 340,173 + DDA3937_RS01520 0.26 -0.2 340,174 - DDA3937_RS01520 0.26 +1.9 340,174 - DDA3937_RS01520 0.26 -0.9 340,174 - DDA3937_RS01520 0.26 +0.1 340,184 + DDA3937_RS01520 0.28 -0.5 340,184 + DDA3937_RS01520 0.28 +0.5 340,185 - DDA3937_RS01520 0.28 -0.3 340,185 - DDA3937_RS01520 0.28 +0.2 340,185 - DDA3937_RS01520 0.28 -1.2 340,298 + DDA3937_RS01520 0.51 -1.4 340,298 + DDA3937_RS01520 0.51 -0.3 340,299 - DDA3937_RS01520 0.52 -0.9 340,508 + +1.0 340,509 - -0.3 340,509 - -1.0 340,538 + +1.3 340,538 + -1.1 340,539 - +0.3 340,539 - -0.0 340,539 - -1.0 340,549 - -1.6 340,565 + -0.3 340,565 + -0.3 340,566 - +0.1 340,566 - -0.7 340,566 - +0.7 340,566 - -0.0 340,646 + +0.2 340,646 + -1.7 340,652 + +1.1 340,652 + -0.1 340,653 - -2.3 340,653 - -0.1 340,653 - -2.1 340,663 - DDA3937_RS01525 0.12 -1.6 340,705 + DDA3937_RS01525 0.26 -0.2 340,705 + DDA3937_RS01525 0.26 +0.2 340,705 + DDA3937_RS01525 0.26 -0.6 340,705 + DDA3937_RS01525 0.26 -0.8 340,705 + DDA3937_RS01525 0.26 -0.7 340,705 + DDA3937_RS01525 0.26 -0.2 340,705 + DDA3937_RS01525 0.26 -0.4 340,705 + DDA3937_RS01525 0.26 -0.2 340,705 + DDA3937_RS01525 0.26 -1.1 340,706 - DDA3937_RS01525 0.27 -0.8 340,706 - DDA3937_RS01525 0.27 +0.6 340,706 - DDA3937_RS01525 0.27 -1.3 340,706 - DDA3937_RS01525 0.27 -0.6 340,706 - DDA3937_RS01525 0.27 -1.7 340,706 - DDA3937_RS01525 0.27 -0.3 340,706 - DDA3937_RS01525 0.27 -0.3 340,706 - DDA3937_RS01525 0.27 -0.6 340,709 + DDA3937_RS01525 0.28 -0.5 340,709 + DDA3937_RS01525 0.28 -0.6 340,709 + -0.3 340,709 + DDA3937_RS01525 0.28 -0.3 340,709 + DDA3937_RS01525 0.28 -1.7 340,709 + DDA3937_RS01525 0.28 -0.6 340,710 - DDA3937_RS01525 0.28 +1.1 340,710 - DDA3937_RS01525 0.28 -0.7 340,710 - DDA3937_RS01525 0.28 -0.6 340,710 - DDA3937_RS01525 0.28 -1.7 340,710 - DDA3937_RS01525 0.28 -1.1 340,804 + DDA3937_RS01525 0.61 -0.1 340,804 + DDA3937_RS01525 0.61 -0.3 340,804 + DDA3937_RS01525 0.61 -1.2 340,804 + DDA3937_RS01525 0.61 +0.1 340,805 - DDA3937_RS01525 0.61 -1.9 340,805 - DDA3937_RS01525 0.61 -0.1 340,805 - DDA3937_RS01525 0.61 -0.3 340,805 - DDA3937_RS01525 0.61 -0.6 340,805 - DDA3937_RS01525 0.61 -1.7 340,805 - DDA3937_RS01525 0.61 -1.9 340,828 + DDA3937_RS01525 0.69 -1.1 340,829 - DDA3937_RS01525 0.69 -0.7 340,829 - DDA3937_RS01525 0.69 -0.7 340,829 - DDA3937_RS01525 0.69 -2.3 340,829 - DDA3937_RS01525 0.69 -1.9 340,851 + DDA3937_RS01525 0.77 -0.1 340,857 + DDA3937_RS01525 0.79 -1.7 340,907 + -2.0 340,908 - -0.7 340,908 - -2.3 340,916 + -1.4 340,917 - -1.3 340,935 + -0.6 340,936 - -0.3 340,936 - -1.0 340,976 + +0.9 340,976 + +1.7 340,980 + -0.9 340,993 + -0.1 341,174 - DDA3937_RS01530 0.16 -0.2 341,223 + DDA3937_RS01530 0.20 -0.9 341,361 - DDA3937_RS01530 0.29 +1.5 341,467 + DDA3937_RS01530 0.37 -0.7 341,504 + DDA3937_RS01530 0.39 +0.2 341,507 + DDA3937_RS01530 0.39 -1.3 341,563 + DDA3937_RS01530 0.43 -2.8 341,563 + DDA3937_RS01530 0.43 +0.9 341,564 - -1.7 341,652 - DDA3937_RS01530 0.50 -1.3 341,829 + DDA3937_RS01530 0.62 -2.1 341,830 - DDA3937_RS01530 0.62 +0.3
Or see this region's nucleotide sequence