Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01420 and DDA3937_RS01425 are separated by 163 nucleotides DDA3937_RS01425 and DDA3937_RS01430 are separated by 314 nucleotides
DDA3937_RS01420: DDA3937_RS01420 - oxidoreductase, at 316,196 to 317,182
_RS01420
DDA3937_RS01425: DDA3937_RS01425 - RNase E specificity factor CsrD, at 317,346 to 319,292
_RS01425
DDA3937_RS01430: DDA3937_RS01430 - rod shape-determining protein MreB, at 319,607 to 320,650
_RS01430
Position (kb) 317
318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.414 kb on + strand, within DDA3937_RS01420 at 316.415 kb on - strand, within DDA3937_RS01420 at 316.483 kb on - strand, within DDA3937_RS01420 at 316.627 kb on - strand, within DDA3937_RS01420 at 316.668 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 317.044 kb on + strand, within DDA3937_RS01420 at 317.045 kb on - strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.061 kb on + strand, within DDA3937_RS01420 at 317.061 kb on + strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.109 kb on - strand at 317.182 kb on + strand at 317.195 kb on + strand at 317.222 kb on - strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.236 kb on + strand at 317.237 kb on - strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.244 kb on - strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.246 kb on - strand at 317.246 kb on - strand at 317.246 kb on - strand at 317.259 kb on - strand at 317.259 kb on - strand at 317.259 kb on - strand at 317.261 kb on + strand at 317.261 kb on + strand at 317.262 kb on - strand at 317.262 kb on - strand at 317.262 kb on - strand at 317.273 kb on + strand at 317.273 kb on + strand at 317.273 kb on + strand at 317.274 kb on - strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.328 kb on - strand at 317.328 kb on - strand at 317.336 kb on - strand at 317.371 kb on + strand at 317.372 kb on - strand at 317.374 kb on + strand at 317.374 kb on + strand at 317.374 kb on + strand at 317.375 kb on - strand at 317.375 kb on - strand at 317.407 kb on + strand at 317.407 kb on + strand at 317.408 kb on - strand at 317.408 kb on - strand at 317.408 kb on - strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.443 kb on - strand at 317.443 kb on - strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.445 kb on - strand at 317.456 kb on + strand at 317.604 kb on + strand, within DDA3937_RS01425 at 317.604 kb on + strand, within DDA3937_RS01425 at 317.604 kb on + strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.612 kb on - strand, within DDA3937_RS01425 at 317.674 kb on + strand, within DDA3937_RS01425 at 317.675 kb on - strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.716 kb on - strand, within DDA3937_RS01425 at 317.780 kb on - strand, within DDA3937_RS01425 at 317.780 kb on - strand, within DDA3937_RS01425 at 318.171 kb on + strand, within DDA3937_RS01425 at 318.232 kb on + strand, within DDA3937_RS01425 at 318.233 kb on - strand at 318.233 kb on - strand, within DDA3937_RS01425 at 318.233 kb on - strand, within DDA3937_RS01425 at 318.262 kb on - strand, within DDA3937_RS01425 at 318.264 kb on + strand, within DDA3937_RS01425 at 318.265 kb on - strand, within DDA3937_RS01425 at 318.265 kb on - strand, within DDA3937_RS01425 at 318.265 kb on - strand, within DDA3937_RS01425 at 318.351 kb on - strand, within DDA3937_RS01425 at 318.412 kb on - strand, within DDA3937_RS01425 at 318.476 kb on - strand, within DDA3937_RS01425 at 318.505 kb on - strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.657 kb on + strand, within DDA3937_RS01425 at 318.658 kb on - strand, within DDA3937_RS01425 at 318.658 kb on - strand, within DDA3937_RS01425 at 318.690 kb on + strand, within DDA3937_RS01425 at 318.690 kb on + strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.755 kb on - strand, within DDA3937_RS01425 at 318.770 kb on + strand, within DDA3937_RS01425 at 318.770 kb on + strand, within DDA3937_RS01425 at 318.787 kb on + strand, within DDA3937_RS01425 at 318.804 kb on - strand, within DDA3937_RS01425 at 318.804 kb on - strand, within DDA3937_RS01425 at 318.890 kb on - strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.925 kb on - strand, within DDA3937_RS01425 at 318.925 kb on - strand, within DDA3937_RS01425 at 318.925 kb on - strand, within DDA3937_RS01425 at 318.926 kb on + strand, within DDA3937_RS01425 at 318.926 kb on + strand, within DDA3937_RS01425 at 318.927 kb on - strand, within DDA3937_RS01425 at 318.927 kb on - strand, within DDA3937_RS01425 at 318.947 kb on - strand, within DDA3937_RS01425 at 318.947 kb on - strand, within DDA3937_RS01425 at 319.020 kb on + strand, within DDA3937_RS01425 at 319.020 kb on + strand, within DDA3937_RS01425 at 319.020 kb on + strand, within DDA3937_RS01425 at 319.021 kb on - strand, within DDA3937_RS01425 at 319.021 kb on - strand, within DDA3937_RS01425 at 319.021 kb on - strand at 319.023 kb on - strand, within DDA3937_RS01425 at 319.023 kb on - strand, within DDA3937_RS01425 at 319.023 kb on - strand, within DDA3937_RS01425 at 319.023 kb on - strand, within DDA3937_RS01425 at 319.169 kb on + strand at 319.169 kb on + strand at 319.199 kb on + strand at 319.284 kb on + strand at 319.284 kb on + strand at 319.284 kb on + strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.313 kb on - strand at 319.313 kb on - strand at 319.317 kb on + strand at 319.317 kb on + strand at 319.317 kb on + strand at 319.317 kb on + strand at 319.318 kb on - strand at 319.318 kb on - strand at 319.318 kb on - strand at 319.318 kb on - strand at 319.334 kb on - strand at 319.334 kb on - strand at 319.338 kb on + strand at 319.388 kb on + strand at 319.388 kb on + strand at 319.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 316,409 + DDA3937_RS01420 0.22 -1.0 316,409 + DDA3937_RS01420 0.22 -0.6 316,409 + DDA3937_RS01420 0.22 -0.6 316,409 + DDA3937_RS01420 0.22 -0.2 316,410 - DDA3937_RS01420 0.22 -1.4 316,410 - DDA3937_RS01420 0.22 -0.3 316,410 - DDA3937_RS01420 0.22 -0.4 316,414 + DDA3937_RS01420 0.22 -0.2 316,415 - DDA3937_RS01420 0.22 -0.6 316,483 - DDA3937_RS01420 0.29 -0.7 316,627 - DDA3937_RS01420 0.44 -1.3 316,668 + DDA3937_RS01420 0.48 -0.5 316,784 + DDA3937_RS01420 0.60 -1.5 316,784 + DDA3937_RS01420 0.60 -0.7 316,784 + DDA3937_RS01420 0.60 +1.7 316,784 + DDA3937_RS01420 0.60 -0.5 316,784 + DDA3937_RS01420 0.60 -0.6 316,785 - DDA3937_RS01420 0.60 -0.5 316,785 - DDA3937_RS01420 0.60 -1.3 316,785 - DDA3937_RS01420 0.60 -2.6 316,785 - DDA3937_RS01420 0.60 -1.8 316,785 - DDA3937_RS01420 0.60 -0.3 317,044 + DDA3937_RS01420 0.86 -0.3 317,045 - DDA3937_RS01420 0.86 -0.7 317,059 + DDA3937_RS01420 0.87 -0.3 317,059 + DDA3937_RS01420 0.87 -0.7 317,059 + DDA3937_RS01420 0.87 +0.0 317,060 - DDA3937_RS01420 0.88 -0.5 317,060 - DDA3937_RS01420 0.88 -0.6 317,060 - DDA3937_RS01420 0.88 +1.4 317,060 - DDA3937_RS01420 0.88 -0.4 317,060 - DDA3937_RS01420 0.88 -0.5 317,061 + DDA3937_RS01420 0.88 -0.5 317,061 + DDA3937_RS01420 0.88 +0.5 317,062 - DDA3937_RS01420 0.88 -1.1 317,062 - DDA3937_RS01420 0.88 +0.8 317,062 - DDA3937_RS01420 0.88 -0.3 317,062 - DDA3937_RS01420 0.88 -2.5 317,109 - -0.1 317,182 + -0.5 317,195 + -0.2 317,222 - +1.0 317,227 + -0.1 317,227 + +1.0 317,227 + -0.3 317,227 + -0.5 317,227 + -0.8 317,228 - -1.0 317,228 - +0.1 317,228 - +1.0 317,228 - +0.4 317,236 + -1.2 317,237 - -0.3 317,243 + -0.6 317,243 + +0.3 317,243 + -0.3 317,243 + -0.1 317,244 - +0.1 317,245 + -1.0 317,245 + -0.2 317,245 + -0.6 317,245 + +0.4 317,246 - +0.7 317,246 - -0.8 317,246 - +0.7 317,259 - -0.9 317,259 - -0.5 317,259 - -1.0 317,261 + -0.9 317,261 + +0.5 317,262 - +0.4 317,262 - +1.0 317,262 - -0.2 317,273 + -0.1 317,273 + +0.4 317,273 + -0.2 317,274 - +1.7 317,296 + -0.6 317,296 + +0.7 317,296 + -2.0 317,296 + +0.0 317,296 + -0.3 317,297 - -0.1 317,297 - +0.7 317,297 - +1.0 317,297 - +0.3 317,297 - +0.4 317,297 - -0.2 317,297 - +0.6 317,328 - -1.2 317,328 - -0.3 317,336 - +1.7 317,371 + +0.2 317,372 - +0.7 317,374 + -0.9 317,374 + +0.2 317,374 + -0.6 317,375 - +0.4 317,375 - +0.4 317,407 + +0.4 317,407 + +0.7 317,408 - -0.5 317,408 - +0.4 317,408 - +0.2 317,442 + +0.7 317,442 + -1.4 317,442 + -0.1 317,442 + +0.7 317,442 + -1.1 317,443 - +0.1 317,443 - +0.5 317,444 + +0.9 317,444 + +2.7 317,444 + -0.7 317,444 + +1.4 317,445 - +0.4 317,456 + -0.6 317,604 + DDA3937_RS01425 0.13 +0.8 317,604 + DDA3937_RS01425 0.13 -0.3 317,604 + DDA3937_RS01425 0.13 -0.1 317,605 - DDA3937_RS01425 0.13 -0.3 317,605 - DDA3937_RS01425 0.13 -0.7 317,605 - DDA3937_RS01425 0.13 +1.0 317,608 + DDA3937_RS01425 0.13 +0.9 317,608 + DDA3937_RS01425 0.13 -0.8 317,608 + DDA3937_RS01425 0.13 -0.2 317,612 - DDA3937_RS01425 0.14 -0.1 317,674 + DDA3937_RS01425 0.17 +0.1 317,675 - DDA3937_RS01425 0.17 +0.8 317,715 + DDA3937_RS01425 0.19 +0.7 317,715 + DDA3937_RS01425 0.19 +0.9 317,715 + DDA3937_RS01425 0.19 +0.0 317,716 - DDA3937_RS01425 0.19 +1.3 317,780 - DDA3937_RS01425 0.22 -1.3 317,780 - DDA3937_RS01425 0.22 -0.3 318,171 + DDA3937_RS01425 0.42 +1.0 318,232 + DDA3937_RS01425 0.46 -0.5 318,233 - -0.3 318,233 - DDA3937_RS01425 0.46 +0.8 318,233 - DDA3937_RS01425 0.46 +0.7 318,262 - DDA3937_RS01425 0.47 -0.3 318,264 + DDA3937_RS01425 0.47 +0.7 318,265 - DDA3937_RS01425 0.47 +0.4 318,265 - DDA3937_RS01425 0.47 +1.4 318,265 - DDA3937_RS01425 0.47 +0.5 318,351 - DDA3937_RS01425 0.52 +1.3 318,412 - DDA3937_RS01425 0.55 +0.1 318,476 - DDA3937_RS01425 0.58 +3.2 318,505 - DDA3937_RS01425 0.60 -1.3 318,566 + DDA3937_RS01425 0.63 +0.7 318,566 + DDA3937_RS01425 0.63 +0.1 318,566 + +1.7 318,566 + DDA3937_RS01425 0.63 +0.8 318,566 + DDA3937_RS01425 0.63 -2.1 318,566 + DDA3937_RS01425 0.63 -0.5 318,566 + DDA3937_RS01425 0.63 +0.0 318,566 + DDA3937_RS01425 0.63 -0.5 318,567 - DDA3937_RS01425 0.63 +0.7 318,567 - DDA3937_RS01425 0.63 +0.3 318,567 - DDA3937_RS01425 0.63 -0.6 318,567 - DDA3937_RS01425 0.63 -0.5 318,567 - DDA3937_RS01425 0.63 -0.5 318,657 + DDA3937_RS01425 0.67 -0.4 318,658 - DDA3937_RS01425 0.67 +0.4 318,658 - DDA3937_RS01425 0.67 +0.8 318,690 + DDA3937_RS01425 0.69 -0.3 318,690 + DDA3937_RS01425 0.69 +1.0 318,691 - DDA3937_RS01425 0.69 +0.3 318,691 - DDA3937_RS01425 0.69 -0.5 318,691 - DDA3937_RS01425 0.69 +0.3 318,691 - DDA3937_RS01425 0.69 +0.9 318,755 - DDA3937_RS01425 0.72 +1.4 318,770 + DDA3937_RS01425 0.73 -0.2 318,770 + DDA3937_RS01425 0.73 +0.4 318,787 + DDA3937_RS01425 0.74 +1.2 318,804 - DDA3937_RS01425 0.75 +0.1 318,804 - DDA3937_RS01425 0.75 +0.5 318,890 - DDA3937_RS01425 0.79 +0.1 318,924 + DDA3937_RS01425 0.81 +0.0 318,924 + DDA3937_RS01425 0.81 +0.3 318,924 + DDA3937_RS01425 0.81 -0.8 318,924 + DDA3937_RS01425 0.81 +0.8 318,924 + DDA3937_RS01425 0.81 -0.7 318,925 - DDA3937_RS01425 0.81 -1.9 318,925 - DDA3937_RS01425 0.81 +1.3 318,925 - DDA3937_RS01425 0.81 +0.9 318,926 + DDA3937_RS01425 0.81 +0.3 318,926 + DDA3937_RS01425 0.81 +0.3 318,927 - DDA3937_RS01425 0.81 +0.0 318,927 - DDA3937_RS01425 0.81 +1.7 318,947 - DDA3937_RS01425 0.82 +1.1 318,947 - DDA3937_RS01425 0.82 +1.3 319,020 + DDA3937_RS01425 0.86 -0.3 319,020 + DDA3937_RS01425 0.86 -0.1 319,020 + DDA3937_RS01425 0.86 +0.5 319,021 - DDA3937_RS01425 0.86 +0.9 319,021 - DDA3937_RS01425 0.86 +0.7 319,021 - -0.9 319,023 - DDA3937_RS01425 0.86 -0.5 319,023 - DDA3937_RS01425 0.86 +0.5 319,023 - DDA3937_RS01425 0.86 +1.3 319,023 - DDA3937_RS01425 0.86 +0.1 319,169 + +0.0 319,169 + +0.7 319,199 + +0.4 319,284 + -1.5 319,284 + -0.6 319,284 + -0.1 319,285 - -0.2 319,285 - +0.6 319,285 - +0.6 319,285 - +0.2 319,285 - -0.3 319,285 - +0.2 319,285 - +0.4 319,313 - -0.2 319,313 - -1.1 319,317 + -1.9 319,317 + +0.1 319,317 + +0.6 319,317 + -0.5 319,318 - -1.6 319,318 - -0.9 319,318 - +1.7 319,318 - +0.8 319,334 - +1.6 319,334 - -0.9 319,338 + +0.1 319,388 + +0.3 319,388 + -1.8 319,474 + +0.1
Or see this region's nucleotide sequence