Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01415 and DDA3937_RS01420 are separated by 219 nucleotides DDA3937_RS01420 and DDA3937_RS01425 are separated by 163 nucleotides
DDA3937_RS01415: DDA3937_RS01415 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 314,975 to 315,976
_RS01415
DDA3937_RS01420: DDA3937_RS01420 - oxidoreductase, at 316,196 to 317,182
_RS01420
DDA3937_RS01425: DDA3937_RS01425 - RNase E specificity factor CsrD, at 317,346 to 319,292
_RS01425
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.308 kb on + strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.369 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.376 kb on - strand, within DDA3937_RS01415 at 315.433 kb on - strand, within DDA3937_RS01415 at 315.453 kb on + strand, within DDA3937_RS01415 at 315.454 kb on - strand, within DDA3937_RS01415 at 315.454 kb on - strand, within DDA3937_RS01415 at 315.555 kb on + strand, within DDA3937_RS01415 at 315.658 kb on + strand, within DDA3937_RS01415 at 315.659 kb on - strand, within DDA3937_RS01415 at 315.659 kb on - strand, within DDA3937_RS01415 at 315.708 kb on + strand, within DDA3937_RS01415 at 315.721 kb on - strand, within DDA3937_RS01415 at 315.752 kb on + strand, within DDA3937_RS01415 at 315.753 kb on - strand, within DDA3937_RS01415 at 315.753 kb on - strand, within DDA3937_RS01415 at 316.055 kb on + strand at 316.055 kb on + strand at 316.056 kb on - strand at 316.056 kb on - strand at 316.056 kb on - strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.068 kb on - strand at 316.068 kb on - strand at 316.068 kb on - strand at 316.068 kb on - strand at 316.078 kb on + strand at 316.079 kb on - strand at 316.079 kb on - strand at 316.090 kb on + strand at 316.090 kb on + strand at 316.091 kb on - strand at 316.091 kb on - strand at 316.128 kb on - strand at 316.146 kb on - strand at 316.225 kb on + strand at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.414 kb on + strand, within DDA3937_RS01420 at 316.415 kb on - strand, within DDA3937_RS01420 at 316.483 kb on - strand, within DDA3937_RS01420 at 316.627 kb on - strand, within DDA3937_RS01420 at 316.668 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 317.044 kb on + strand, within DDA3937_RS01420 at 317.045 kb on - strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.061 kb on + strand, within DDA3937_RS01420 at 317.061 kb on + strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.109 kb on - strand at 317.182 kb on + strand at 317.195 kb on + strand at 317.222 kb on - strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.236 kb on + strand at 317.237 kb on - strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.244 kb on - strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.246 kb on - strand at 317.246 kb on - strand at 317.246 kb on - strand at 317.259 kb on - strand at 317.259 kb on - strand at 317.259 kb on - strand at 317.261 kb on + strand at 317.261 kb on + strand at 317.262 kb on - strand at 317.262 kb on - strand at 317.262 kb on - strand at 317.273 kb on + strand at 317.273 kb on + strand at 317.273 kb on + strand at 317.274 kb on - strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.328 kb on - strand at 317.328 kb on - strand at 317.336 kb on - strand at 317.371 kb on + strand at 317.372 kb on - strand at 317.374 kb on + strand at 317.374 kb on + strand at 317.374 kb on + strand at 317.375 kb on - strand at 317.375 kb on - strand at 317.407 kb on + strand at 317.407 kb on + strand at 317.408 kb on - strand at 317.408 kb on - strand at 317.408 kb on - strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.443 kb on - strand at 317.443 kb on - strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.445 kb on - strand at 317.456 kb on + strand at 317.604 kb on + strand, within DDA3937_RS01425 at 317.604 kb on + strand, within DDA3937_RS01425 at 317.604 kb on + strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.612 kb on - strand, within DDA3937_RS01425 at 317.674 kb on + strand, within DDA3937_RS01425 at 317.675 kb on - strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.716 kb on - strand, within DDA3937_RS01425 at 317.780 kb on - strand, within DDA3937_RS01425 at 317.780 kb on - strand, within DDA3937_RS01425 at 318.171 kb on + strand, within DDA3937_RS01425
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 315,229 + DDA3937_RS01415 0.25 -2.1 315,229 + DDA3937_RS01415 0.25 -0.6 315,229 + DDA3937_RS01415 0.25 -0.1 315,229 + DDA3937_RS01415 0.25 -0.5 315,229 + DDA3937_RS01415 0.25 -1.6 315,230 - DDA3937_RS01415 0.25 +0.1 315,230 - DDA3937_RS01415 0.25 +1.3 315,230 - DDA3937_RS01415 0.25 +0.9 315,308 + DDA3937_RS01415 0.33 -1.6 315,309 - DDA3937_RS01415 0.33 -1.9 315,309 - DDA3937_RS01415 0.33 +0.3 315,309 - DDA3937_RS01415 0.33 +0.3 315,309 - DDA3937_RS01415 0.33 +0.1 315,369 + DDA3937_RS01415 0.39 -0.9 315,375 + DDA3937_RS01415 0.40 -0.2 315,375 + DDA3937_RS01415 0.40 +2.3 315,375 + DDA3937_RS01415 0.40 +0.0 315,376 - DDA3937_RS01415 0.40 -0.9 315,433 - DDA3937_RS01415 0.46 -1.1 315,453 + DDA3937_RS01415 0.48 -0.1 315,454 - DDA3937_RS01415 0.48 -0.1 315,454 - DDA3937_RS01415 0.48 +0.8 315,555 + DDA3937_RS01415 0.58 +1.9 315,658 + DDA3937_RS01415 0.68 +0.5 315,659 - DDA3937_RS01415 0.68 -0.2 315,659 - DDA3937_RS01415 0.68 -0.9 315,708 + DDA3937_RS01415 0.73 -0.6 315,721 - DDA3937_RS01415 0.74 +0.4 315,752 + DDA3937_RS01415 0.78 +0.2 315,753 - DDA3937_RS01415 0.78 -0.6 315,753 - DDA3937_RS01415 0.78 +0.6 316,055 + -1.0 316,055 + +0.2 316,056 - -0.4 316,056 - -0.6 316,056 - +0.1 316,067 + -0.3 316,067 + +0.0 316,067 + +0.9 316,067 + -1.3 316,067 + -0.3 316,067 + -0.4 316,067 + -0.3 316,067 + -0.5 316,068 - -0.1 316,068 - -0.3 316,068 - -0.6 316,068 - +0.9 316,078 + +1.1 316,079 - -0.8 316,079 - -1.1 316,090 + +0.4 316,090 + -0.2 316,091 - -1.1 316,091 - +0.1 316,128 - -0.3 316,146 - +0.6 316,225 + -0.8 316,409 + DDA3937_RS01420 0.22 -1.0 316,409 + DDA3937_RS01420 0.22 -0.6 316,409 + DDA3937_RS01420 0.22 -0.6 316,409 + DDA3937_RS01420 0.22 -0.2 316,410 - DDA3937_RS01420 0.22 -1.4 316,410 - DDA3937_RS01420 0.22 -0.3 316,410 - DDA3937_RS01420 0.22 -0.4 316,414 + DDA3937_RS01420 0.22 -0.2 316,415 - DDA3937_RS01420 0.22 -0.6 316,483 - DDA3937_RS01420 0.29 -0.7 316,627 - DDA3937_RS01420 0.44 -1.3 316,668 + DDA3937_RS01420 0.48 -0.5 316,784 + DDA3937_RS01420 0.60 -1.5 316,784 + DDA3937_RS01420 0.60 -0.7 316,784 + DDA3937_RS01420 0.60 +1.7 316,784 + DDA3937_RS01420 0.60 -0.5 316,784 + DDA3937_RS01420 0.60 -0.6 316,785 - DDA3937_RS01420 0.60 -0.5 316,785 - DDA3937_RS01420 0.60 -1.3 316,785 - DDA3937_RS01420 0.60 -2.6 316,785 - DDA3937_RS01420 0.60 -1.8 316,785 - DDA3937_RS01420 0.60 -0.3 317,044 + DDA3937_RS01420 0.86 -0.3 317,045 - DDA3937_RS01420 0.86 -0.7 317,059 + DDA3937_RS01420 0.87 -0.3 317,059 + DDA3937_RS01420 0.87 -0.7 317,059 + DDA3937_RS01420 0.87 +0.0 317,060 - DDA3937_RS01420 0.88 -0.5 317,060 - DDA3937_RS01420 0.88 -0.6 317,060 - DDA3937_RS01420 0.88 +1.4 317,060 - DDA3937_RS01420 0.88 -0.4 317,060 - DDA3937_RS01420 0.88 -0.5 317,061 + DDA3937_RS01420 0.88 -0.5 317,061 + DDA3937_RS01420 0.88 +0.5 317,062 - DDA3937_RS01420 0.88 -1.1 317,062 - DDA3937_RS01420 0.88 +0.8 317,062 - DDA3937_RS01420 0.88 -0.3 317,062 - DDA3937_RS01420 0.88 -2.5 317,109 - -0.1 317,182 + -0.5 317,195 + -0.2 317,222 - +1.0 317,227 + -0.1 317,227 + +1.0 317,227 + -0.3 317,227 + -0.5 317,227 + -0.8 317,228 - -1.0 317,228 - +0.1 317,228 - +1.0 317,228 - +0.4 317,236 + -1.2 317,237 - -0.3 317,243 + -0.6 317,243 + +0.3 317,243 + -0.3 317,243 + -0.1 317,244 - +0.1 317,245 + -1.0 317,245 + -0.2 317,245 + -0.6 317,245 + +0.4 317,246 - +0.7 317,246 - -0.8 317,246 - +0.7 317,259 - -0.9 317,259 - -0.5 317,259 - -1.0 317,261 + -0.9 317,261 + +0.5 317,262 - +0.4 317,262 - +1.0 317,262 - -0.2 317,273 + -0.1 317,273 + +0.4 317,273 + -0.2 317,274 - +1.7 317,296 + -0.6 317,296 + +0.7 317,296 + -2.0 317,296 + +0.0 317,296 + -0.3 317,297 - -0.1 317,297 - +0.7 317,297 - +1.0 317,297 - +0.3 317,297 - +0.4 317,297 - -0.2 317,297 - +0.6 317,328 - -1.2 317,328 - -0.3 317,336 - +1.7 317,371 + +0.2 317,372 - +0.7 317,374 + -0.9 317,374 + +0.2 317,374 + -0.6 317,375 - +0.4 317,375 - +0.4 317,407 + +0.4 317,407 + +0.7 317,408 - -0.5 317,408 - +0.4 317,408 - +0.2 317,442 + +0.7 317,442 + -1.4 317,442 + -0.1 317,442 + +0.7 317,442 + -1.1 317,443 - +0.1 317,443 - +0.5 317,444 + +0.9 317,444 + +2.7 317,444 + -0.7 317,444 + +1.4 317,445 - +0.4 317,456 + -0.6 317,604 + DDA3937_RS01425 0.13 +0.8 317,604 + DDA3937_RS01425 0.13 -0.3 317,604 + DDA3937_RS01425 0.13 -0.1 317,605 - DDA3937_RS01425 0.13 -0.3 317,605 - DDA3937_RS01425 0.13 -0.7 317,605 - DDA3937_RS01425 0.13 +1.0 317,608 + DDA3937_RS01425 0.13 +0.9 317,608 + DDA3937_RS01425 0.13 -0.8 317,608 + DDA3937_RS01425 0.13 -0.2 317,612 - DDA3937_RS01425 0.14 -0.1 317,674 + DDA3937_RS01425 0.17 +0.1 317,675 - DDA3937_RS01425 0.17 +0.8 317,715 + DDA3937_RS01425 0.19 +0.7 317,715 + DDA3937_RS01425 0.19 +0.9 317,715 + DDA3937_RS01425 0.19 +0.0 317,716 - DDA3937_RS01425 0.19 +1.3 317,780 - DDA3937_RS01425 0.22 -1.3 317,780 - DDA3937_RS01425 0.22 -0.3 318,171 + DDA3937_RS01425 0.42 +1.0
Or see this region's nucleotide sequence