Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01320 and DDA3937_RS01325 overlap by 1 nucleotides DDA3937_RS01325 and DDA3937_RS01330 are separated by 90 nucleotides DDA3937_RS01330 and DDA3937_RS23390 are separated by 111 nucleotides DDA3937_RS23390 and DDA3937_RS01340 are separated by 189 nucleotides DDA3937_RS01340 and DDA3937_RS01345 overlap by 8 nucleotides DDA3937_RS01345 and DDA3937_RS01350 overlap by 4 nucleotides
DDA3937_RS01320: DDA3937_RS01320 - site-specific integrase, at 296,712 to 297,932
_RS01320
DDA3937_RS01325: DDA3937_RS01325 - hypothetical protein, at 297,932 to 298,669
_RS01325
DDA3937_RS01330: DDA3937_RS01330 - AlpA family phage regulatory protein, at 298,760 to 298,984
_RS01330
DDA3937_RS23390: DDA3937_RS23390 - hypothetical protein, at 299,096 to 299,290
_RS23390
DDA3937_RS01340: DDA3937_RS01340 - hypothetical protein, at 299,480 to 299,701
_RS01340
DDA3937_RS01345: DDA3937_RS01345 - hypothetical protein, at 299,694 to 299,909
_RS01345
DDA3937_RS01350: DDA3937_RS01350 - DNA primase, at 299,906 to 301,675
_RS01350
Position (kb) 298
299 Strain fitness (log2 ratio) -2
-1
0
1
2 at 297.794 kb on + strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.834 kb on + strand at 297.835 kb on - strand at 297.863 kb on + strand at 298.042 kb on + strand, within DDA3937_RS01325 at 298.053 kb on - strand, within DDA3937_RS01325 at 298.186 kb on + strand, within DDA3937_RS01325 at 298.234 kb on + strand, within DDA3937_RS01325 at 298.294 kb on + strand, within DDA3937_RS01325 at 298.361 kb on + strand, within DDA3937_RS01325 at 298.362 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.547 kb on - strand, within DDA3937_RS01325 at 298.563 kb on + strand, within DDA3937_RS01325 at 298.624 kb on - strand at 298.641 kb on - strand at 298.671 kb on - strand at 298.700 kb on + strand at 298.771 kb on + strand at 298.800 kb on + strand, within DDA3937_RS01330 at 298.803 kb on + strand, within DDA3937_RS01330 at 298.804 kb on - strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.963 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.988 kb on - strand at 298.988 kb on - strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.992 kb on - strand at 298.992 kb on - strand at 298.992 kb on - strand at 299.000 kb on + strand at 299.000 kb on + strand at 299.047 kb on + strand at 299.063 kb on + strand at 299.064 kb on - strand at 299.064 kb on - strand at 299.093 kb on + strand at 299.093 kb on + strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.116 kb on + strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.310 kb on - strand at 299.345 kb on - strand at 299.369 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.479 kb on + strand at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.649 kb on + strand, within DDA3937_RS01340 at 299.650 kb on - strand, within DDA3937_RS01340 at 299.656 kb on - strand, within DDA3937_RS01340 at 299.705 kb on + strand at 299.741 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.768 kb on + strand, within DDA3937_RS01345 at 299.769 kb on - strand, within DDA3937_RS01345 at 299.813 kb on + strand, within DDA3937_RS01345 at 299.813 kb on + strand, within DDA3937_RS01345 at 299.834 kb on + strand, within DDA3937_RS01345 at 299.857 kb on + strand, within DDA3937_RS01345 at 299.857 kb on + strand, within DDA3937_RS01345 at 299.858 kb on - strand, within DDA3937_RS01345 at 299.962 kb on - strand at 299.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 297,794 + DDA3937_RS01320 0.89 -0.7 297,795 - DDA3937_RS01320 0.89 -0.3 297,795 - DDA3937_RS01320 0.89 -1.2 297,834 + -0.1 297,835 - -0.2 297,863 + -0.9 298,042 + DDA3937_RS01325 0.15 +0.6 298,053 - DDA3937_RS01325 0.16 +1.4 298,186 + DDA3937_RS01325 0.34 -0.9 298,234 + DDA3937_RS01325 0.41 -0.9 298,294 + DDA3937_RS01325 0.49 -0.4 298,361 + DDA3937_RS01325 0.58 +1.1 298,362 - DDA3937_RS01325 0.58 +1.7 298,390 - DDA3937_RS01325 0.62 -0.3 298,390 - DDA3937_RS01325 0.62 +1.3 298,547 - DDA3937_RS01325 0.83 -1.3 298,563 + DDA3937_RS01325 0.86 -0.1 298,624 - +0.1 298,641 - -0.1 298,671 - +0.2 298,700 + +1.3 298,771 + +0.0 298,800 + DDA3937_RS01330 0.18 -1.5 298,803 + DDA3937_RS01330 0.19 +0.3 298,804 - DDA3937_RS01330 0.20 +0.3 298,896 + DDA3937_RS01330 0.60 -0.9 298,896 + DDA3937_RS01330 0.60 +1.5 298,897 - DDA3937_RS01330 0.61 +0.1 298,897 - DDA3937_RS01330 0.61 -1.0 298,897 - DDA3937_RS01330 0.61 -0.1 298,963 + +0.3 298,987 + -0.1 298,987 + -0.6 298,987 + -2.3 298,987 + -0.2 298,987 + -2.1 298,988 - +0.1 298,988 - +0.3 298,991 + +1.1 298,991 + +0.1 298,991 + -0.4 298,991 + +0.4 298,991 + +0.6 298,992 - -0.0 298,992 - +1.9 298,992 - -1.2 299,000 + +0.3 299,000 + -1.6 299,047 + +0.1 299,063 + +0.0 299,064 - -0.1 299,064 - -1.9 299,093 + +0.1 299,093 + +0.0 299,094 - +1.0 299,094 - -0.9 299,094 - -0.2 299,116 + DDA3937_RS23390 0.10 +0.4 299,117 - DDA3937_RS23390 0.11 +0.3 299,117 - DDA3937_RS23390 0.11 -0.2 299,117 - DDA3937_RS23390 0.11 +0.7 299,310 - +0.5 299,345 - -0.1 299,369 + +0.8 299,458 + -0.3 299,458 + -0.4 299,458 + -0.3 299,458 + +0.4 299,458 + -0.9 299,458 + -0.1 299,459 - +1.0 299,459 - +0.2 299,459 - +0.8 299,459 - -0.5 299,459 - +0.2 299,459 - -0.4 299,459 - -0.0 299,459 - +2.7 299,459 - +0.7 299,459 - -1.1 299,479 + -0.1 299,537 - +1.1 299,537 - DDA3937_RS01340 0.26 +0.6 299,537 - DDA3937_RS01340 0.26 +0.3 299,537 - DDA3937_RS01340 0.26 -0.5 299,537 - -0.3 299,537 - DDA3937_RS01340 0.26 -0.3 299,537 - DDA3937_RS01340 0.26 +0.3 299,537 - DDA3937_RS01340 0.26 +1.1 299,570 + DDA3937_RS01340 0.41 -0.3 299,570 + DDA3937_RS01340 0.41 +1.1 299,570 + DDA3937_RS01340 0.41 -0.6 299,570 + DDA3937_RS01340 0.41 -0.9 299,571 - DDA3937_RS01340 0.41 -0.7 299,571 - DDA3937_RS01340 0.41 +0.4 299,571 - DDA3937_RS01340 0.41 -0.4 299,649 + DDA3937_RS01340 0.76 -0.2 299,650 - DDA3937_RS01340 0.77 -0.1 299,656 - DDA3937_RS01340 0.79 +0.2 299,705 + -0.8 299,741 + DDA3937_RS01345 0.22 -0.6 299,765 + DDA3937_RS01345 0.33 +1.1 299,765 + DDA3937_RS01345 0.33 -0.1 299,765 + DDA3937_RS01345 0.33 -0.1 299,765 + DDA3937_RS01345 0.33 -1.1 299,765 + DDA3937_RS01345 0.33 +0.3 299,766 - DDA3937_RS01345 0.33 -1.4 299,766 - DDA3937_RS01345 0.33 +0.7 299,766 - DDA3937_RS01345 0.33 -0.7 299,766 - DDA3937_RS01345 0.33 -0.2 299,766 - DDA3937_RS01345 0.33 -1.0 299,766 - DDA3937_RS01345 0.33 -0.4 299,768 + DDA3937_RS01345 0.34 -0.2 299,769 - DDA3937_RS01345 0.35 -0.5 299,813 + DDA3937_RS01345 0.55 +0.7 299,813 + DDA3937_RS01345 0.55 +0.5 299,834 + DDA3937_RS01345 0.65 -1.3 299,857 + DDA3937_RS01345 0.75 +1.0 299,857 + DDA3937_RS01345 0.75 -1.9 299,858 - DDA3937_RS01345 0.76 -2.2 299,962 - -0.3 299,962 - +0.2
Or see this region's nucleotide sequence