Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01320 and DDA3937_RS01325 overlap by 1 nucleotides DDA3937_RS01325 and DDA3937_RS01330 are separated by 90 nucleotides DDA3937_RS01330 and DDA3937_RS23390 are separated by 111 nucleotides DDA3937_RS23390 and DDA3937_RS01340 are separated by 189 nucleotides
DDA3937_RS01320: DDA3937_RS01320 - site-specific integrase, at 296,712 to 297,932
_RS01320
DDA3937_RS01325: DDA3937_RS01325 - hypothetical protein, at 297,932 to 298,669
_RS01325
DDA3937_RS01330: DDA3937_RS01330 - AlpA family phage regulatory protein, at 298,760 to 298,984
_RS01330
DDA3937_RS23390: DDA3937_RS23390 - hypothetical protein, at 299,096 to 299,290
_RS23390
DDA3937_RS01340: DDA3937_RS01340 - hypothetical protein, at 299,480 to 299,701
_RS01340
Position (kb) 297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 297.000 kb on - strand, within DDA3937_RS01320 at 297.051 kb on + strand, within DDA3937_RS01320 at 297.067 kb on - strand, within DDA3937_RS01320 at 297.067 kb on - strand, within DDA3937_RS01320 at 297.071 kb on + strand, within DDA3937_RS01320 at 297.071 kb on + strand, within DDA3937_RS01320 at 297.091 kb on + strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.127 kb on - strand, within DDA3937_RS01320 at 297.132 kb on + strand, within DDA3937_RS01320 at 297.132 kb on + strand, within DDA3937_RS01320 at 297.133 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.196 kb on + strand, within DDA3937_RS01320 at 297.197 kb on - strand, within DDA3937_RS01320 at 297.226 kb on - strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.243 kb on - strand, within DDA3937_RS01320 at 297.277 kb on - strand, within DDA3937_RS01320 at 297.277 kb on - strand at 297.284 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.320 kb on - strand, within DDA3937_RS01320 at 297.412 kb on - strand, within DDA3937_RS01320 at 297.412 kb on - strand, within DDA3937_RS01320 at 297.414 kb on + strand, within DDA3937_RS01320 at 297.415 kb on - strand, within DDA3937_RS01320 at 297.466 kb on + strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.550 kb on + strand, within DDA3937_RS01320 at 297.560 kb on + strand, within DDA3937_RS01320 at 297.599 kb on + strand, within DDA3937_RS01320 at 297.638 kb on - strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.746 kb on - strand, within DDA3937_RS01320 at 297.752 kb on + strand, within DDA3937_RS01320 at 297.753 kb on - strand, within DDA3937_RS01320 at 297.759 kb on - strand, within DDA3937_RS01320 at 297.794 kb on + strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.834 kb on + strand at 297.835 kb on - strand at 297.863 kb on + strand at 298.042 kb on + strand, within DDA3937_RS01325 at 298.053 kb on - strand, within DDA3937_RS01325 at 298.186 kb on + strand, within DDA3937_RS01325 at 298.234 kb on + strand, within DDA3937_RS01325 at 298.294 kb on + strand, within DDA3937_RS01325 at 298.361 kb on + strand, within DDA3937_RS01325 at 298.362 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.547 kb on - strand, within DDA3937_RS01325 at 298.563 kb on + strand, within DDA3937_RS01325 at 298.624 kb on - strand at 298.641 kb on - strand at 298.671 kb on - strand at 298.700 kb on + strand at 298.771 kb on + strand at 298.800 kb on + strand, within DDA3937_RS01330 at 298.803 kb on + strand, within DDA3937_RS01330 at 298.804 kb on - strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.963 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.988 kb on - strand at 298.988 kb on - strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.992 kb on - strand at 298.992 kb on - strand at 298.992 kb on - strand at 299.000 kb on + strand at 299.000 kb on + strand at 299.047 kb on + strand at 299.063 kb on + strand at 299.064 kb on - strand at 299.064 kb on - strand at 299.093 kb on + strand at 299.093 kb on + strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.116 kb on + strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.310 kb on - strand at 299.345 kb on - strand at 299.369 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.479 kb on + strand at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.649 kb on + strand, within DDA3937_RS01340 at 299.650 kb on - strand, within DDA3937_RS01340 at 299.656 kb on - strand, within DDA3937_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 296,995 + DDA3937_RS01320 0.23 +0.7 296,995 + DDA3937_RS01320 0.23 -0.2 296,995 + DDA3937_RS01320 0.23 +0.6 296,995 + DDA3937_RS01320 0.23 -0.9 297,000 - DDA3937_RS01320 0.24 +0.3 297,051 + DDA3937_RS01320 0.28 -0.3 297,067 - DDA3937_RS01320 0.29 -0.1 297,067 - DDA3937_RS01320 0.29 +0.3 297,071 + DDA3937_RS01320 0.29 -0.1 297,071 + DDA3937_RS01320 0.29 -2.3 297,091 + DDA3937_RS01320 0.31 +0.4 297,092 - DDA3937_RS01320 0.31 -2.8 297,092 - DDA3937_RS01320 0.31 -0.9 297,092 - DDA3937_RS01320 0.31 -1.6 297,092 - DDA3937_RS01320 0.31 -0.7 297,092 - DDA3937_RS01320 0.31 +0.4 297,092 - DDA3937_RS01320 0.31 -1.3 297,095 + DDA3937_RS01320 0.31 -0.1 297,095 + DDA3937_RS01320 0.31 -1.0 297,095 + DDA3937_RS01320 0.31 -0.7 297,096 - DDA3937_RS01320 0.31 -0.5 297,096 - DDA3937_RS01320 0.31 +0.1 297,096 - DDA3937_RS01320 0.31 +0.5 297,096 - DDA3937_RS01320 0.31 +0.7 297,096 - DDA3937_RS01320 0.31 -1.3 297,122 + DDA3937_RS01320 0.34 -1.6 297,122 + DDA3937_RS01320 0.34 -0.9 297,122 + DDA3937_RS01320 0.34 -0.7 297,123 - DDA3937_RS01320 0.34 -0.0 297,123 - DDA3937_RS01320 0.34 +0.4 297,123 - DDA3937_RS01320 0.34 +0.1 297,126 + DDA3937_RS01320 0.34 -1.1 297,126 + DDA3937_RS01320 0.34 -0.6 297,126 + DDA3937_RS01320 0.34 +1.3 297,127 - DDA3937_RS01320 0.34 -0.3 297,132 + DDA3937_RS01320 0.34 +0.7 297,132 + DDA3937_RS01320 0.34 -0.3 297,133 - DDA3937_RS01320 0.34 -1.0 297,137 - DDA3937_RS01320 0.35 -0.6 297,137 - DDA3937_RS01320 0.35 +0.3 297,137 - DDA3937_RS01320 0.35 -0.5 297,137 - DDA3937_RS01320 0.35 +1.2 297,196 + DDA3937_RS01320 0.40 -1.3 297,197 - DDA3937_RS01320 0.40 +0.4 297,226 - DDA3937_RS01320 0.42 +0.3 297,242 + DDA3937_RS01320 0.43 -0.4 297,242 + DDA3937_RS01320 0.43 -0.0 297,242 + DDA3937_RS01320 0.43 -0.3 297,242 + DDA3937_RS01320 0.43 -0.1 297,243 - DDA3937_RS01320 0.43 -0.5 297,277 - DDA3937_RS01320 0.46 -0.5 297,277 - -0.3 297,284 + DDA3937_RS01320 0.47 +0.1 297,287 + DDA3937_RS01320 0.47 +0.7 297,287 + DDA3937_RS01320 0.47 -0.3 297,287 + DDA3937_RS01320 0.47 -0.1 297,288 - DDA3937_RS01320 0.47 -0.9 297,288 - DDA3937_RS01320 0.47 +0.1 297,288 - DDA3937_RS01320 0.47 -0.3 297,288 - DDA3937_RS01320 0.47 -0.3 297,319 + DDA3937_RS01320 0.50 -1.3 297,319 + DDA3937_RS01320 0.50 -0.5 297,319 + DDA3937_RS01320 0.50 -0.7 297,320 - DDA3937_RS01320 0.50 -0.9 297,412 - DDA3937_RS01320 0.57 +0.3 297,412 - DDA3937_RS01320 0.57 +0.5 297,414 + DDA3937_RS01320 0.57 +0.6 297,415 - DDA3937_RS01320 0.58 +0.0 297,466 + DDA3937_RS01320 0.62 +0.3 297,497 - DDA3937_RS01320 0.64 -0.7 297,497 - DDA3937_RS01320 0.64 -0.9 297,497 - DDA3937_RS01320 0.64 -0.4 297,497 - DDA3937_RS01320 0.64 +0.1 297,497 - DDA3937_RS01320 0.64 -0.3 297,530 + DDA3937_RS01320 0.67 +0.1 297,530 + DDA3937_RS01320 0.67 -1.1 297,530 + DDA3937_RS01320 0.67 -0.6 297,530 + DDA3937_RS01320 0.67 +0.9 297,530 + DDA3937_RS01320 0.67 +1.0 297,531 - DDA3937_RS01320 0.67 -0.3 297,531 - DDA3937_RS01320 0.67 +0.5 297,531 - DDA3937_RS01320 0.67 -0.7 297,531 - DDA3937_RS01320 0.67 +0.1 297,531 - DDA3937_RS01320 0.67 -0.8 297,531 - DDA3937_RS01320 0.67 -0.6 297,550 + DDA3937_RS01320 0.69 -0.6 297,560 + DDA3937_RS01320 0.69 -1.6 297,599 + DDA3937_RS01320 0.73 -1.6 297,638 - DDA3937_RS01320 0.76 +0.1 297,678 + DDA3937_RS01320 0.79 +0.8 297,678 + DDA3937_RS01320 0.79 -0.3 297,678 + DDA3937_RS01320 0.79 +0.5 297,679 - DDA3937_RS01320 0.79 +0.2 297,679 - DDA3937_RS01320 0.79 -0.9 297,679 - DDA3937_RS01320 0.79 +0.4 297,679 - DDA3937_RS01320 0.79 +0.7 297,679 - DDA3937_RS01320 0.79 +0.1 297,746 - DDA3937_RS01320 0.85 +0.0 297,752 + DDA3937_RS01320 0.85 +0.0 297,753 - DDA3937_RS01320 0.85 -0.4 297,759 - DDA3937_RS01320 0.86 -2.1 297,794 + DDA3937_RS01320 0.89 -0.7 297,795 - DDA3937_RS01320 0.89 -0.3 297,795 - DDA3937_RS01320 0.89 -1.2 297,834 + -0.1 297,835 - -0.2 297,863 + -0.9 298,042 + DDA3937_RS01325 0.15 +0.6 298,053 - DDA3937_RS01325 0.16 +1.4 298,186 + DDA3937_RS01325 0.34 -0.9 298,234 + DDA3937_RS01325 0.41 -0.9 298,294 + DDA3937_RS01325 0.49 -0.4 298,361 + DDA3937_RS01325 0.58 +1.1 298,362 - DDA3937_RS01325 0.58 +1.7 298,390 - DDA3937_RS01325 0.62 -0.3 298,390 - DDA3937_RS01325 0.62 +1.3 298,547 - DDA3937_RS01325 0.83 -1.3 298,563 + DDA3937_RS01325 0.86 -0.1 298,624 - +0.1 298,641 - -0.1 298,671 - +0.2 298,700 + +1.3 298,771 + +0.0 298,800 + DDA3937_RS01330 0.18 -1.5 298,803 + DDA3937_RS01330 0.19 +0.3 298,804 - DDA3937_RS01330 0.20 +0.3 298,896 + DDA3937_RS01330 0.60 -0.9 298,896 + DDA3937_RS01330 0.60 +1.5 298,897 - DDA3937_RS01330 0.61 +0.1 298,897 - DDA3937_RS01330 0.61 -1.0 298,897 - DDA3937_RS01330 0.61 -0.1 298,963 + +0.3 298,987 + -0.1 298,987 + -0.6 298,987 + -2.3 298,987 + -0.2 298,987 + -2.1 298,988 - +0.1 298,988 - +0.3 298,991 + +1.1 298,991 + +0.1 298,991 + -0.4 298,991 + +0.4 298,991 + +0.6 298,992 - -0.0 298,992 - +1.9 298,992 - -1.2 299,000 + +0.3 299,000 + -1.6 299,047 + +0.1 299,063 + +0.0 299,064 - -0.1 299,064 - -1.9 299,093 + +0.1 299,093 + +0.0 299,094 - +1.0 299,094 - -0.9 299,094 - -0.2 299,116 + DDA3937_RS23390 0.10 +0.4 299,117 - DDA3937_RS23390 0.11 +0.3 299,117 - DDA3937_RS23390 0.11 -0.2 299,117 - DDA3937_RS23390 0.11 +0.7 299,310 - +0.5 299,345 - -0.1 299,369 + +0.8 299,458 + -0.3 299,458 + -0.4 299,458 + -0.3 299,458 + +0.4 299,458 + -0.9 299,458 + -0.1 299,459 - +1.0 299,459 - +0.2 299,459 - +0.8 299,459 - -0.5 299,459 - +0.2 299,459 - -0.4 299,459 - -0.0 299,459 - +2.7 299,459 - +0.7 299,459 - -1.1 299,479 + -0.1 299,537 - +1.1 299,537 - DDA3937_RS01340 0.26 +0.6 299,537 - DDA3937_RS01340 0.26 +0.3 299,537 - DDA3937_RS01340 0.26 -0.5 299,537 - -0.3 299,537 - DDA3937_RS01340 0.26 -0.3 299,537 - DDA3937_RS01340 0.26 +0.3 299,537 - DDA3937_RS01340 0.26 +1.1 299,570 + DDA3937_RS01340 0.41 -0.3 299,570 + DDA3937_RS01340 0.41 +1.1 299,570 + DDA3937_RS01340 0.41 -0.6 299,570 + DDA3937_RS01340 0.41 -0.9 299,571 - DDA3937_RS01340 0.41 -0.7 299,571 - DDA3937_RS01340 0.41 +0.4 299,571 - DDA3937_RS01340 0.41 -0.4 299,649 + DDA3937_RS01340 0.76 -0.2 299,650 - DDA3937_RS01340 0.77 -0.1 299,656 - DDA3937_RS01340 0.79 +0.2
Or see this region's nucleotide sequence