Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01315 and DDA3937_RS01320 are separated by 327 nucleotides DDA3937_RS01320 and DDA3937_RS01325 overlap by 1 nucleotides DDA3937_RS01325 and DDA3937_RS01330 are separated by 90 nucleotides
DDA3937_RS01315: DDA3937_RS01315 - NAD(P)-dependent alcohol dehydrogenase, at 295,338 to 296,384
_RS01315
DDA3937_RS01320: DDA3937_RS01320 - site-specific integrase, at 296,712 to 297,932
_RS01320
DDA3937_RS01325: DDA3937_RS01325 - hypothetical protein, at 297,932 to 298,669
_RS01325
DDA3937_RS01330: DDA3937_RS01330 - AlpA family phage regulatory protein, at 298,760 to 298,984
_RS01330
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 295.726 kb on - strand, within DDA3937_RS01315 at 295.820 kb on + strand, within DDA3937_RS01315 at 295.821 kb on - strand, within DDA3937_RS01315 at 295.821 kb on - strand, within DDA3937_RS01315 at 295.901 kb on + strand, within DDA3937_RS01315 at 295.946 kb on - strand, within DDA3937_RS01315 at 295.946 kb on - strand, within DDA3937_RS01315 at 296.077 kb on - strand, within DDA3937_RS01315 at 296.087 kb on + strand, within DDA3937_RS01315 at 296.087 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.320 kb on - strand at 296.327 kb on + strand at 296.327 kb on + strand at 296.327 kb on + strand at 296.327 kb on + strand at 296.327 kb on + strand at 296.327 kb on + strand at 296.327 kb on + strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.328 kb on - strand at 296.366 kb on + strand at 296.383 kb on - strand at 296.458 kb on - strand at 296.461 kb on + strand at 296.461 kb on + strand at 296.462 kb on - strand at 296.499 kb on - strand at 296.548 kb on + strand at 296.711 kb on + strand at 296.711 kb on + strand at 296.711 kb on + strand at 296.711 kb on + strand at 296.729 kb on + strand at 296.730 kb on - strand at 296.741 kb on + strand at 296.742 kb on - strand at 296.742 kb on - strand at 296.753 kb on + strand at 296.753 kb on + strand at 296.754 kb on - strand at 296.783 kb on + strand at 296.783 kb on + strand at 296.783 kb on + strand at 296.783 kb on + strand at 296.784 kb on - strand at 296.790 kb on + strand at 296.791 kb on - strand at 296.791 kb on - strand at 296.810 kb on - strand at 296.810 kb on - strand at 296.847 kb on + strand, within DDA3937_RS01320 at 296.852 kb on + strand, within DDA3937_RS01320 at 296.853 kb on - strand, within DDA3937_RS01320 at 296.853 kb on - strand, within DDA3937_RS01320 at 296.891 kb on + strand, within DDA3937_RS01320 at 296.891 kb on + strand, within DDA3937_RS01320 at 296.891 kb on + strand, within DDA3937_RS01320 at 296.891 kb on + strand, within DDA3937_RS01320 at 296.892 kb on - strand, within DDA3937_RS01320 at 296.892 kb on - strand, within DDA3937_RS01320 at 296.893 kb on + strand, within DDA3937_RS01320 at 296.893 kb on + strand, within DDA3937_RS01320 at 296.893 kb on + strand, within DDA3937_RS01320 at 296.894 kb on - strand, within DDA3937_RS01320 at 296.904 kb on - strand, within DDA3937_RS01320 at 296.904 kb on - strand, within DDA3937_RS01320 at 296.904 kb on - strand, within DDA3937_RS01320 at 296.917 kb on + strand, within DDA3937_RS01320 at 296.918 kb on - strand, within DDA3937_RS01320 at 296.918 kb on - strand, within DDA3937_RS01320 at 296.918 kb on - strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 296.995 kb on + strand, within DDA3937_RS01320 at 297.000 kb on - strand, within DDA3937_RS01320 at 297.051 kb on + strand, within DDA3937_RS01320 at 297.067 kb on - strand, within DDA3937_RS01320 at 297.067 kb on - strand, within DDA3937_RS01320 at 297.071 kb on + strand, within DDA3937_RS01320 at 297.071 kb on + strand, within DDA3937_RS01320 at 297.091 kb on + strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.092 kb on - strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.095 kb on + strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.096 kb on - strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.122 kb on + strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.123 kb on - strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.126 kb on + strand, within DDA3937_RS01320 at 297.127 kb on - strand, within DDA3937_RS01320 at 297.132 kb on + strand, within DDA3937_RS01320 at 297.132 kb on + strand, within DDA3937_RS01320 at 297.133 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.137 kb on - strand, within DDA3937_RS01320 at 297.196 kb on + strand, within DDA3937_RS01320 at 297.197 kb on - strand, within DDA3937_RS01320 at 297.226 kb on - strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.242 kb on + strand, within DDA3937_RS01320 at 297.243 kb on - strand, within DDA3937_RS01320 at 297.277 kb on - strand, within DDA3937_RS01320 at 297.277 kb on - strand at 297.284 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.287 kb on + strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.288 kb on - strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.319 kb on + strand, within DDA3937_RS01320 at 297.320 kb on - strand, within DDA3937_RS01320 at 297.412 kb on - strand, within DDA3937_RS01320 at 297.412 kb on - strand, within DDA3937_RS01320 at 297.414 kb on + strand, within DDA3937_RS01320 at 297.415 kb on - strand, within DDA3937_RS01320 at 297.466 kb on + strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.497 kb on - strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.530 kb on + strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.531 kb on - strand, within DDA3937_RS01320 at 297.550 kb on + strand, within DDA3937_RS01320 at 297.560 kb on + strand, within DDA3937_RS01320 at 297.599 kb on + strand, within DDA3937_RS01320 at 297.638 kb on - strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.678 kb on + strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.679 kb on - strand, within DDA3937_RS01320 at 297.746 kb on - strand, within DDA3937_RS01320 at 297.752 kb on + strand, within DDA3937_RS01320 at 297.753 kb on - strand, within DDA3937_RS01320 at 297.759 kb on - strand, within DDA3937_RS01320 at 297.794 kb on + strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.795 kb on - strand, within DDA3937_RS01320 at 297.834 kb on + strand at 297.835 kb on - strand at 297.863 kb on + strand at 298.042 kb on + strand, within DDA3937_RS01325 at 298.053 kb on - strand, within DDA3937_RS01325 at 298.186 kb on + strand, within DDA3937_RS01325 at 298.234 kb on + strand, within DDA3937_RS01325 at 298.294 kb on + strand, within DDA3937_RS01325 at 298.361 kb on + strand, within DDA3937_RS01325 at 298.362 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.390 kb on - strand, within DDA3937_RS01325 at 298.547 kb on - strand, within DDA3937_RS01325 at 298.563 kb on + strand, within DDA3937_RS01325 at 298.624 kb on - strand at 298.641 kb on - strand at 298.671 kb on - strand at 298.700 kb on + strand at 298.771 kb on + strand at 298.800 kb on + strand, within DDA3937_RS01330 at 298.803 kb on + strand, within DDA3937_RS01330 at 298.804 kb on - strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 295,726 - DDA3937_RS01315 0.37 +1.8 295,820 + DDA3937_RS01315 0.46 +0.0 295,821 - DDA3937_RS01315 0.46 +0.7 295,821 - DDA3937_RS01315 0.46 +0.2 295,901 + DDA3937_RS01315 0.54 +0.7 295,946 - DDA3937_RS01315 0.58 +0.0 295,946 - DDA3937_RS01315 0.58 -0.5 296,077 - DDA3937_RS01315 0.71 -0.1 296,087 + DDA3937_RS01315 0.72 -0.9 296,087 + DDA3937_RS01315 0.72 -2.1 296,097 + DDA3937_RS01315 0.72 -0.2 296,097 + DDA3937_RS01315 0.72 +0.2 296,097 + DDA3937_RS01315 0.72 -0.8 296,097 + DDA3937_RS01315 0.72 -0.1 296,098 - DDA3937_RS01315 0.73 +0.3 296,098 - DDA3937_RS01315 0.73 -0.7 296,098 - DDA3937_RS01315 0.73 -0.9 296,098 - DDA3937_RS01315 0.73 +0.7 296,098 - DDA3937_RS01315 0.73 -0.9 296,098 - DDA3937_RS01315 0.73 +0.2 296,098 - DDA3937_RS01315 0.73 -0.9 296,320 - -0.0 296,327 + +0.5 296,327 + +0.7 296,327 + +0.5 296,327 + -1.5 296,327 + -1.8 296,327 + +0.5 296,327 + +0.2 296,328 - +0.7 296,328 - +0.0 296,328 - +0.1 296,328 - -0.6 296,328 - -0.0 296,328 - -0.5 296,328 - +0.2 296,328 - -0.3 296,328 - -1.2 296,366 + +0.2 296,383 - -0.4 296,458 - +0.3 296,461 + +0.5 296,461 + -0.1 296,462 - +0.4 296,499 - +0.6 296,548 + -2.3 296,711 + -1.2 296,711 + -0.3 296,711 + -0.2 296,711 + +0.6 296,729 + -0.4 296,730 - +0.1 296,741 + +0.4 296,742 - -1.6 296,742 - -0.3 296,753 + -0.9 296,753 + +0.0 296,754 - -1.5 296,783 + +0.1 296,783 + -0.9 296,783 + +0.4 296,783 + -0.1 296,784 - +0.1 296,790 + -0.4 296,791 - -0.4 296,791 - -0.8 296,810 - -1.1 296,810 - -0.9 296,847 + DDA3937_RS01320 0.11 -0.1 296,852 + DDA3937_RS01320 0.11 -0.3 296,853 - DDA3937_RS01320 0.12 -0.6 296,853 - DDA3937_RS01320 0.12 +0.3 296,891 + DDA3937_RS01320 0.15 +1.0 296,891 + DDA3937_RS01320 0.15 -0.1 296,891 + DDA3937_RS01320 0.15 -0.5 296,891 + DDA3937_RS01320 0.15 +0.6 296,892 - DDA3937_RS01320 0.15 -1.6 296,892 - DDA3937_RS01320 0.15 -0.3 296,893 + DDA3937_RS01320 0.15 -0.3 296,893 + DDA3937_RS01320 0.15 -0.5 296,893 + DDA3937_RS01320 0.15 -0.1 296,894 - DDA3937_RS01320 0.15 -0.6 296,904 - DDA3937_RS01320 0.16 +0.2 296,904 - DDA3937_RS01320 0.16 -0.2 296,904 - DDA3937_RS01320 0.16 -0.1 296,917 + DDA3937_RS01320 0.17 +0.2 296,918 - DDA3937_RS01320 0.17 -0.7 296,918 - DDA3937_RS01320 0.17 -1.7 296,918 - DDA3937_RS01320 0.17 -1.1 296,995 + DDA3937_RS01320 0.23 +0.7 296,995 + DDA3937_RS01320 0.23 -0.2 296,995 + DDA3937_RS01320 0.23 +0.6 296,995 + DDA3937_RS01320 0.23 -0.9 297,000 - DDA3937_RS01320 0.24 +0.3 297,051 + DDA3937_RS01320 0.28 -0.3 297,067 - DDA3937_RS01320 0.29 -0.1 297,067 - DDA3937_RS01320 0.29 +0.3 297,071 + DDA3937_RS01320 0.29 -0.1 297,071 + DDA3937_RS01320 0.29 -2.3 297,091 + DDA3937_RS01320 0.31 +0.4 297,092 - DDA3937_RS01320 0.31 -2.8 297,092 - DDA3937_RS01320 0.31 -0.9 297,092 - DDA3937_RS01320 0.31 -1.6 297,092 - DDA3937_RS01320 0.31 -0.7 297,092 - DDA3937_RS01320 0.31 +0.4 297,092 - DDA3937_RS01320 0.31 -1.3 297,095 + DDA3937_RS01320 0.31 -0.1 297,095 + DDA3937_RS01320 0.31 -1.0 297,095 + DDA3937_RS01320 0.31 -0.7 297,096 - DDA3937_RS01320 0.31 -0.5 297,096 - DDA3937_RS01320 0.31 +0.1 297,096 - DDA3937_RS01320 0.31 +0.5 297,096 - DDA3937_RS01320 0.31 +0.7 297,096 - DDA3937_RS01320 0.31 -1.3 297,122 + DDA3937_RS01320 0.34 -1.6 297,122 + DDA3937_RS01320 0.34 -0.9 297,122 + DDA3937_RS01320 0.34 -0.7 297,123 - DDA3937_RS01320 0.34 -0.0 297,123 - DDA3937_RS01320 0.34 +0.4 297,123 - DDA3937_RS01320 0.34 +0.1 297,126 + DDA3937_RS01320 0.34 -1.1 297,126 + DDA3937_RS01320 0.34 -0.6 297,126 + DDA3937_RS01320 0.34 +1.3 297,127 - DDA3937_RS01320 0.34 -0.3 297,132 + DDA3937_RS01320 0.34 +0.7 297,132 + DDA3937_RS01320 0.34 -0.3 297,133 - DDA3937_RS01320 0.34 -1.0 297,137 - DDA3937_RS01320 0.35 -0.6 297,137 - DDA3937_RS01320 0.35 +0.3 297,137 - DDA3937_RS01320 0.35 -0.5 297,137 - DDA3937_RS01320 0.35 +1.2 297,196 + DDA3937_RS01320 0.40 -1.3 297,197 - DDA3937_RS01320 0.40 +0.4 297,226 - DDA3937_RS01320 0.42 +0.3 297,242 + DDA3937_RS01320 0.43 -0.4 297,242 + DDA3937_RS01320 0.43 -0.0 297,242 + DDA3937_RS01320 0.43 -0.3 297,242 + DDA3937_RS01320 0.43 -0.1 297,243 - DDA3937_RS01320 0.43 -0.5 297,277 - DDA3937_RS01320 0.46 -0.5 297,277 - -0.3 297,284 + DDA3937_RS01320 0.47 +0.1 297,287 + DDA3937_RS01320 0.47 +0.7 297,287 + DDA3937_RS01320 0.47 -0.3 297,287 + DDA3937_RS01320 0.47 -0.1 297,288 - DDA3937_RS01320 0.47 -0.9 297,288 - DDA3937_RS01320 0.47 +0.1 297,288 - DDA3937_RS01320 0.47 -0.3 297,288 - DDA3937_RS01320 0.47 -0.3 297,319 + DDA3937_RS01320 0.50 -1.3 297,319 + DDA3937_RS01320 0.50 -0.5 297,319 + DDA3937_RS01320 0.50 -0.7 297,320 - DDA3937_RS01320 0.50 -0.9 297,412 - DDA3937_RS01320 0.57 +0.3 297,412 - DDA3937_RS01320 0.57 +0.5 297,414 + DDA3937_RS01320 0.57 +0.6 297,415 - DDA3937_RS01320 0.58 +0.0 297,466 + DDA3937_RS01320 0.62 +0.3 297,497 - DDA3937_RS01320 0.64 -0.7 297,497 - DDA3937_RS01320 0.64 -0.9 297,497 - DDA3937_RS01320 0.64 -0.4 297,497 - DDA3937_RS01320 0.64 +0.1 297,497 - DDA3937_RS01320 0.64 -0.3 297,530 + DDA3937_RS01320 0.67 +0.1 297,530 + DDA3937_RS01320 0.67 -1.1 297,530 + DDA3937_RS01320 0.67 -0.6 297,530 + DDA3937_RS01320 0.67 +0.9 297,530 + DDA3937_RS01320 0.67 +1.0 297,531 - DDA3937_RS01320 0.67 -0.3 297,531 - DDA3937_RS01320 0.67 +0.5 297,531 - DDA3937_RS01320 0.67 -0.7 297,531 - DDA3937_RS01320 0.67 +0.1 297,531 - DDA3937_RS01320 0.67 -0.8 297,531 - DDA3937_RS01320 0.67 -0.6 297,550 + DDA3937_RS01320 0.69 -0.6 297,560 + DDA3937_RS01320 0.69 -1.6 297,599 + DDA3937_RS01320 0.73 -1.6 297,638 - DDA3937_RS01320 0.76 +0.1 297,678 + DDA3937_RS01320 0.79 +0.8 297,678 + DDA3937_RS01320 0.79 -0.3 297,678 + DDA3937_RS01320 0.79 +0.5 297,679 - DDA3937_RS01320 0.79 +0.2 297,679 - DDA3937_RS01320 0.79 -0.9 297,679 - DDA3937_RS01320 0.79 +0.4 297,679 - DDA3937_RS01320 0.79 +0.7 297,679 - DDA3937_RS01320 0.79 +0.1 297,746 - DDA3937_RS01320 0.85 +0.0 297,752 + DDA3937_RS01320 0.85 +0.0 297,753 - DDA3937_RS01320 0.85 -0.4 297,759 - DDA3937_RS01320 0.86 -2.1 297,794 + DDA3937_RS01320 0.89 -0.7 297,795 - DDA3937_RS01320 0.89 -0.3 297,795 - DDA3937_RS01320 0.89 -1.2 297,834 + -0.1 297,835 - -0.2 297,863 + -0.9 298,042 + DDA3937_RS01325 0.15 +0.6 298,053 - DDA3937_RS01325 0.16 +1.4 298,186 + DDA3937_RS01325 0.34 -0.9 298,234 + DDA3937_RS01325 0.41 -0.9 298,294 + DDA3937_RS01325 0.49 -0.4 298,361 + DDA3937_RS01325 0.58 +1.1 298,362 - DDA3937_RS01325 0.58 +1.7 298,390 - DDA3937_RS01325 0.62 -0.3 298,390 - DDA3937_RS01325 0.62 +1.3 298,547 - DDA3937_RS01325 0.83 -1.3 298,563 + DDA3937_RS01325 0.86 -0.1 298,624 - +0.1 298,641 - -0.1 298,671 - +0.2 298,700 + +1.3 298,771 + +0.0 298,800 + DDA3937_RS01330 0.18 -1.5 298,803 + DDA3937_RS01330 0.19 +0.3 298,804 - DDA3937_RS01330 0.20 +0.3 298,896 + DDA3937_RS01330 0.60 -0.9 298,896 + DDA3937_RS01330 0.60 +1.5 298,897 - DDA3937_RS01330 0.61 +0.1 298,897 - DDA3937_RS01330 0.61 -1.0 298,897 - DDA3937_RS01330 0.61 -0.1
Or see this region's nucleotide sequence