Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01300 and DDA3937_RS01305 are separated by 312 nucleotides DDA3937_RS01305 and DDA3937_RS01310 are separated by 14 nucleotides DDA3937_RS01310 and DDA3937_RS01315 are separated by 36 nucleotides
DDA3937_RS01300: DDA3937_RS01300 - LysR family transcriptional regulator, at 293,476 to 294,369
_RS01300
DDA3937_RS01305: DDA3937_RS01305 - cupin domain-containing protein, at 294,682 to 295,077
_RS01305
DDA3937_RS01310: DDA3937_RS01310 - hypothetical protein, at 295,092 to 295,301
_RS01310
DDA3937_RS01315: DDA3937_RS01315 - NAD(P)-dependent alcohol dehydrogenase, at 295,338 to 296,384
_RS01315
Position (kb) 295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.265 kb on + strand, within DDA3937_RS01300 at 294.265 kb on + strand, within DDA3937_RS01300 at 294.266 kb on - strand, within DDA3937_RS01300 at 294.266 kb on - strand, within DDA3937_RS01300 at 294.266 kb on - strand, within DDA3937_RS01300 at 294.364 kb on - strand at 294.416 kb on + strand at 294.416 kb on + strand at 294.416 kb on + strand at 294.416 kb on + strand at 294.416 kb on + strand at 294.416 kb on + strand at 294.416 kb on + strand at 294.417 kb on - strand at 294.417 kb on - strand at 294.417 kb on - strand at 294.417 kb on - strand at 294.417 kb on - strand at 294.417 kb on - strand at 294.419 kb on - strand at 294.419 kb on - strand at 294.419 kb on - strand at 294.419 kb on - strand at 294.426 kb on - strand at 294.429 kb on + strand at 294.429 kb on + strand at 294.430 kb on - strand at 294.430 kb on - strand at 294.446 kb on + strand at 294.447 kb on - strand at 294.447 kb on - strand at 294.447 kb on - strand at 294.447 kb on - strand at 294.470 kb on + strand at 294.470 kb on + strand at 294.470 kb on + strand at 294.493 kb on + strand at 294.494 kb on - strand at 294.589 kb on + strand at 294.589 kb on + strand at 294.590 kb on - strand at 294.595 kb on + strand at 294.596 kb on - strand at 294.596 kb on - strand at 294.596 kb on - strand at 294.603 kb on + strand at 294.603 kb on + strand at 294.603 kb on + strand at 294.604 kb on - strand at 294.604 kb on - strand at 294.604 kb on - strand at 294.604 kb on - strand at 294.604 kb on - strand at 294.604 kb on - strand at 294.612 kb on + strand at 294.612 kb on + strand at 294.612 kb on + strand at 294.613 kb on - strand at 294.613 kb on - strand at 294.613 kb on - strand at 294.613 kb on - strand at 294.749 kb on + strand, within DDA3937_RS01305 at 294.749 kb on + strand, within DDA3937_RS01305 at 294.749 kb on + strand, within DDA3937_RS01305 at 294.749 kb on + strand, within DDA3937_RS01305 at 294.750 kb on - strand, within DDA3937_RS01305 at 294.938 kb on + strand, within DDA3937_RS01305 at 294.938 kb on + strand, within DDA3937_RS01305 at 294.938 kb on + strand, within DDA3937_RS01305 at 294.939 kb on - strand, within DDA3937_RS01305 at 294.939 kb on - strand, within DDA3937_RS01305 at 294.939 kb on - strand, within DDA3937_RS01305 at 295.075 kb on + strand at 295.075 kb on + strand at 295.142 kb on + strand, within DDA3937_RS01310 at 295.142 kb on + strand, within DDA3937_RS01310 at 295.142 kb on + strand, within DDA3937_RS01310 at 295.143 kb on - strand, within DDA3937_RS01310 at 295.143 kb on - strand, within DDA3937_RS01310 at 295.146 kb on - strand, within DDA3937_RS01310 at 295.182 kb on + strand, within DDA3937_RS01310 at 295.182 kb on + strand, within DDA3937_RS01310 at 295.182 kb on + strand, within DDA3937_RS01310 at 295.183 kb on - strand, within DDA3937_RS01310 at 295.183 kb on - strand, within DDA3937_RS01310 at 295.183 kb on - strand, within DDA3937_RS01310 at 295.191 kb on + strand, within DDA3937_RS01310 at 295.191 kb on + strand, within DDA3937_RS01310 at 295.192 kb on - strand, within DDA3937_RS01310 at 295.192 kb on - strand, within DDA3937_RS01310 at 295.192 kb on - strand, within DDA3937_RS01310 at 295.192 kb on - strand, within DDA3937_RS01310 at 295.192 kb on - strand, within DDA3937_RS01310 at 295.192 kb on - strand, within DDA3937_RS01310 at 295.192 kb on - strand, within DDA3937_RS01310 at 295.196 kb on + strand, within DDA3937_RS01310 at 295.196 kb on + strand, within DDA3937_RS01310 at 295.197 kb on - strand, within DDA3937_RS01310 at 295.197 kb on - strand, within DDA3937_RS01310 at 295.197 kb on - strand, within DDA3937_RS01310 at 295.197 kb on - strand, within DDA3937_RS01310 at 295.197 kb on - strand, within DDA3937_RS01310 at 295.197 kb on - strand, within DDA3937_RS01310 at 295.197 kb on - strand, within DDA3937_RS01310 at 295.263 kb on - strand, within DDA3937_RS01310 at 295.299 kb on + strand at 295.299 kb on + strand at 295.300 kb on - strand at 295.315 kb on - strand at 295.331 kb on + strand at 295.331 kb on + strand at 295.332 kb on - strand at 295.332 kb on - strand at 295.332 kb on - strand at 295.332 kb on - strand at 295.332 kb on - strand at 295.444 kb on - strand, within DDA3937_RS01315 at 295.444 kb on - strand, within DDA3937_RS01315 at 295.444 kb on - strand, within DDA3937_RS01315 at 295.634 kb on + strand, within DDA3937_RS01315 at 295.634 kb on + strand, within DDA3937_RS01315 at 295.634 kb on + strand, within DDA3937_RS01315 at 295.634 kb on + strand, within DDA3937_RS01315 at 295.635 kb on - strand, within DDA3937_RS01315 at 295.635 kb on - strand, within DDA3937_RS01315 at 295.635 kb on - strand, within DDA3937_RS01315 at 295.635 kb on - strand, within DDA3937_RS01315 at 295.635 kb on - strand, within DDA3937_RS01315 at 295.653 kb on + strand, within DDA3937_RS01315 at 295.654 kb on - strand, within DDA3937_RS01315 at 295.654 kb on - strand, within DDA3937_RS01315 at 295.680 kb on + strand, within DDA3937_RS01315 at 295.680 kb on + strand, within DDA3937_RS01315 at 295.681 kb on - strand, within DDA3937_RS01315 at 295.681 kb on - strand, within DDA3937_RS01315 at 295.681 kb on - strand, within DDA3937_RS01315 at 295.681 kb on - strand, within DDA3937_RS01315 at 295.681 kb on - strand, within DDA3937_RS01315 at 295.726 kb on - strand, within DDA3937_RS01315 at 295.820 kb on + strand, within DDA3937_RS01315 at 295.821 kb on - strand, within DDA3937_RS01315 at 295.821 kb on - strand, within DDA3937_RS01315 at 295.901 kb on + strand, within DDA3937_RS01315 at 295.946 kb on - strand, within DDA3937_RS01315 at 295.946 kb on - strand, within DDA3937_RS01315 at 296.077 kb on - strand, within DDA3937_RS01315 at 296.087 kb on + strand, within DDA3937_RS01315 at 296.087 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.097 kb on + strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315 at 296.098 kb on - strand, within DDA3937_RS01315
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 294,265 + DDA3937_RS01300 0.88 -0.5 294,265 + DDA3937_RS01300 0.88 -0.4 294,266 - DDA3937_RS01300 0.88 +0.6 294,266 - DDA3937_RS01300 0.88 +1.3 294,266 - DDA3937_RS01300 0.88 +1.1 294,364 - -0.4 294,416 + +0.5 294,416 + -1.5 294,416 + +0.7 294,416 + -0.4 294,416 + -0.8 294,416 + -0.5 294,416 + -0.8 294,417 - -1.0 294,417 - -0.1 294,417 - -0.5 294,417 - -0.4 294,417 - +0.2 294,417 - +0.4 294,419 - -0.1 294,419 - -0.0 294,419 - +0.9 294,419 - -0.7 294,426 - -0.6 294,429 + -1.1 294,429 + -1.9 294,430 - +0.1 294,430 - -0.0 294,446 + -0.6 294,447 - -0.6 294,447 - +0.3 294,447 - -1.3 294,447 - -0.0 294,470 + -0.8 294,470 + -1.4 294,470 + +0.7 294,493 + -0.2 294,494 - -0.1 294,589 + +0.5 294,589 + -0.0 294,590 - +0.2 294,595 + +0.1 294,596 - +2.1 294,596 - -0.3 294,596 - -0.6 294,603 + +0.0 294,603 + -0.8 294,603 + -0.9 294,604 - +0.2 294,604 - -1.3 294,604 - -0.3 294,604 - -1.1 294,604 - -0.8 294,604 - -1.3 294,612 + +0.4 294,612 + +0.4 294,612 + +0.3 294,613 - -0.8 294,613 - -0.4 294,613 - +1.7 294,613 - +0.4 294,749 + DDA3937_RS01305 0.17 -0.5 294,749 + DDA3937_RS01305 0.17 -0.2 294,749 + DDA3937_RS01305 0.17 +0.2 294,749 + DDA3937_RS01305 0.17 -0.1 294,750 - DDA3937_RS01305 0.17 -0.8 294,938 + DDA3937_RS01305 0.65 -0.1 294,938 + DDA3937_RS01305 0.65 +0.2 294,938 + DDA3937_RS01305 0.65 +0.2 294,939 - DDA3937_RS01305 0.65 -0.5 294,939 - DDA3937_RS01305 0.65 +0.1 294,939 - DDA3937_RS01305 0.65 +0.2 295,075 + +0.1 295,075 + +0.0 295,142 + DDA3937_RS01310 0.24 -0.7 295,142 + DDA3937_RS01310 0.24 +1.3 295,142 + DDA3937_RS01310 0.24 -1.2 295,143 - DDA3937_RS01310 0.24 -1.5 295,143 - DDA3937_RS01310 0.24 -0.1 295,146 - DDA3937_RS01310 0.26 -0.5 295,182 + DDA3937_RS01310 0.43 +0.7 295,182 + DDA3937_RS01310 0.43 -0.7 295,182 + DDA3937_RS01310 0.43 -0.4 295,183 - DDA3937_RS01310 0.43 -1.6 295,183 - DDA3937_RS01310 0.43 +0.2 295,183 - DDA3937_RS01310 0.43 +0.1 295,191 + DDA3937_RS01310 0.47 -0.9 295,191 + DDA3937_RS01310 0.47 -0.9 295,192 - DDA3937_RS01310 0.48 -0.6 295,192 - DDA3937_RS01310 0.48 +0.0 295,192 - DDA3937_RS01310 0.48 -0.3 295,192 - DDA3937_RS01310 0.48 +0.7 295,192 - DDA3937_RS01310 0.48 -0.3 295,192 - DDA3937_RS01310 0.48 +0.5 295,192 - DDA3937_RS01310 0.48 +1.7 295,196 + DDA3937_RS01310 0.50 -0.3 295,196 + DDA3937_RS01310 0.50 -1.0 295,197 - DDA3937_RS01310 0.50 -0.3 295,197 - DDA3937_RS01310 0.50 -0.2 295,197 - DDA3937_RS01310 0.50 -0.6 295,197 - DDA3937_RS01310 0.50 -0.1 295,197 - DDA3937_RS01310 0.50 -0.6 295,197 - DDA3937_RS01310 0.50 -1.1 295,197 - DDA3937_RS01310 0.50 +0.2 295,263 - DDA3937_RS01310 0.81 +1.4 295,299 + +0.3 295,299 + -0.9 295,300 - +0.1 295,315 - -0.1 295,331 + -1.1 295,331 + -0.6 295,332 - -1.3 295,332 - -0.2 295,332 - -0.0 295,332 - +0.1 295,332 - -0.5 295,444 - DDA3937_RS01315 0.10 +0.4 295,444 - DDA3937_RS01315 0.10 -0.2 295,444 - DDA3937_RS01315 0.10 -0.1 295,634 + DDA3937_RS01315 0.28 +0.7 295,634 + DDA3937_RS01315 0.28 +0.7 295,634 + DDA3937_RS01315 0.28 +0.7 295,634 + DDA3937_RS01315 0.28 -0.2 295,635 - DDA3937_RS01315 0.28 -0.6 295,635 - DDA3937_RS01315 0.28 +0.1 295,635 - DDA3937_RS01315 0.28 -0.6 295,635 - DDA3937_RS01315 0.28 +0.0 295,635 - DDA3937_RS01315 0.28 +0.1 295,653 + DDA3937_RS01315 0.30 +0.0 295,654 - DDA3937_RS01315 0.30 +0.7 295,654 - DDA3937_RS01315 0.30 -1.8 295,680 + DDA3937_RS01315 0.33 +1.6 295,680 + DDA3937_RS01315 0.33 +0.3 295,681 - DDA3937_RS01315 0.33 +0.0 295,681 - DDA3937_RS01315 0.33 +0.6 295,681 - DDA3937_RS01315 0.33 -1.0 295,681 - DDA3937_RS01315 0.33 +0.7 295,681 - DDA3937_RS01315 0.33 +1.2 295,726 - DDA3937_RS01315 0.37 +1.8 295,820 + DDA3937_RS01315 0.46 +0.0 295,821 - DDA3937_RS01315 0.46 +0.7 295,821 - DDA3937_RS01315 0.46 +0.2 295,901 + DDA3937_RS01315 0.54 +0.7 295,946 - DDA3937_RS01315 0.58 +0.0 295,946 - DDA3937_RS01315 0.58 -0.5 296,077 - DDA3937_RS01315 0.71 -0.1 296,087 + DDA3937_RS01315 0.72 -0.9 296,087 + DDA3937_RS01315 0.72 -2.1 296,097 + DDA3937_RS01315 0.72 -0.2 296,097 + DDA3937_RS01315 0.72 +0.2 296,097 + DDA3937_RS01315 0.72 -0.8 296,097 + DDA3937_RS01315 0.72 -0.1 296,098 - DDA3937_RS01315 0.73 +0.3 296,098 - DDA3937_RS01315 0.73 -0.7 296,098 - DDA3937_RS01315 0.73 -0.9 296,098 - DDA3937_RS01315 0.73 +0.7 296,098 - DDA3937_RS01315 0.73 -0.9 296,098 - DDA3937_RS01315 0.73 +0.2 296,098 - DDA3937_RS01315 0.73 -0.9
Or see this region's nucleotide sequence