Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01270 and DDA3937_RS01275 are separated by 296 nucleotides DDA3937_RS01275 and DDA3937_RS01280 are separated by 114 nucleotides DDA3937_RS01280 and DDA3937_RS01285 are separated by 25 nucleotides
DDA3937_RS01270: DDA3937_RS01270 - amino acid ABC transporter substrate-binding protein, at 287,369 to 288,394
_RS01270
DDA3937_RS01275: DDA3937_RS01275 - CTP synthase, at 288,691 to 289,386
_RS01275
DDA3937_RS01280: DDA3937_RS01280 - amino acid ABC transporter permease, at 289,501 to 290,166
_RS01280
DDA3937_RS01285: DDA3937_RS01285 - amino acid ABC transporter substrate-binding protein, at 290,192 to 290,962
_RS01285
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 287.744 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.082 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.226 kb on - strand, within DDA3937_RS01270 at 288.247 kb on - strand, within DDA3937_RS01270 at 288.380 kb on - strand at 288.380 kb on - strand at 288.394 kb on + strand at 288.394 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.411 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.417 kb on - strand at 288.417 kb on - strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.420 kb on - strand at 288.420 kb on - strand at 288.420 kb on - strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.533 kb on + strand at 288.534 kb on - strand at 288.537 kb on + strand at 288.538 kb on - strand at 288.538 kb on - strand at 288.545 kb on + strand at 288.546 kb on - strand at 288.559 kb on + strand at 288.596 kb on + strand at 288.596 kb on + strand at 288.597 kb on - strand at 288.598 kb on + strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.619 kb on + strand at 288.620 kb on - strand at 288.697 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.740 kb on - strand at 288.749 kb on - strand at 288.820 kb on - strand, within DDA3937_RS01275 at 288.850 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 289.047 kb on + strand, within DDA3937_RS01275 at 289.048 kb on - strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.083 kb on - strand, within DDA3937_RS01275 at 289.097 kb on + strand, within DDA3937_RS01275 at 289.167 kb on + strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.244 kb on - strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.247 kb on - strand, within DDA3937_RS01275 at 289.349 kb on + strand at 289.349 kb on + strand at 289.350 kb on - strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.358 kb on - strand at 289.404 kb on - strand at 289.499 kb on + strand at 289.523 kb on + strand at 289.524 kb on - strand at 289.524 kb on - strand at 289.526 kb on + strand at 289.551 kb on + strand at 289.552 kb on - strand at 289.552 kb on - strand at 289.552 kb on - strand at 289.555 kb on + strand at 289.555 kb on + strand at 289.556 kb on - strand at 289.556 kb on - strand at 289.556 kb on - strand at 289.578 kb on - strand, within DDA3937_RS01280 at 289.597 kb on - strand, within DDA3937_RS01280 at 289.598 kb on + strand, within DDA3937_RS01280 at 289.599 kb on - strand, within DDA3937_RS01280 at 289.599 kb on - strand, within DDA3937_RS01280 at 289.599 kb on - strand, within DDA3937_RS01280 at 289.616 kb on + strand, within DDA3937_RS01280 at 289.632 kb on + strand, within DDA3937_RS01280 at 289.633 kb on - strand, within DDA3937_RS01280 at 289.633 kb on - strand, within DDA3937_RS01280 at 289.704 kb on + strand, within DDA3937_RS01280 at 289.710 kb on + strand, within DDA3937_RS01280 at 289.711 kb on - strand, within DDA3937_RS01280 at 289.714 kb on - strand, within DDA3937_RS01280 at 289.714 kb on - strand, within DDA3937_RS01280 at 289.738 kb on + strand, within DDA3937_RS01280 at 289.797 kb on - strand, within DDA3937_RS01280 at 289.797 kb on - strand, within DDA3937_RS01280 at 289.833 kb on + strand, within DDA3937_RS01280 at 289.859 kb on + strand, within DDA3937_RS01280 at 289.937 kb on + strand, within DDA3937_RS01280 at 289.964 kb on - strand at 289.991 kb on + strand, within DDA3937_RS01280 at 290.028 kb on - strand, within DDA3937_RS01280 at 290.152 kb on + strand at 290.152 kb on + strand at 290.152 kb on + strand at 290.153 kb on - strand at 290.153 kb on - strand at 290.169 kb on - strand at 290.193 kb on + strand at 290.193 kb on + strand at 290.194 kb on - strand at 290.194 kb on - strand at 290.217 kb on + strand at 290.218 kb on - strand at 290.236 kb on + strand at 290.237 kb on - strand at 290.238 kb on + strand at 290.238 kb on + strand at 290.238 kb on + strand at 290.238 kb on + strand at 290.239 kb on - strand at 290.239 kb on - strand at 290.239 kb on - strand at 290.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 287,744 + DDA3937_RS01270 0.37 -0.1 287,776 + DDA3937_RS01270 0.40 -0.0 287,776 + DDA3937_RS01270 0.40 +0.1 287,787 + DDA3937_RS01270 0.41 -0.2 287,787 + DDA3937_RS01270 0.41 +0.6 287,788 - DDA3937_RS01270 0.41 +0.3 287,788 - DDA3937_RS01270 0.41 -3.1 287,788 - DDA3937_RS01270 0.41 -0.3 287,880 + DDA3937_RS01270 0.50 +0.0 287,880 + DDA3937_RS01270 0.50 +0.5 287,881 - DDA3937_RS01270 0.50 +0.7 287,881 - DDA3937_RS01270 0.50 +0.3 287,881 - DDA3937_RS01270 0.50 -0.4 287,881 - DDA3937_RS01270 0.50 +0.1 287,904 + DDA3937_RS01270 0.52 -0.3 287,904 + DDA3937_RS01270 0.52 -0.3 288,022 - DDA3937_RS01270 0.64 +0.5 288,022 - DDA3937_RS01270 0.64 +0.9 288,022 - DDA3937_RS01270 0.64 +1.2 288,022 - DDA3937_RS01270 0.64 +0.9 288,022 - DDA3937_RS01270 0.64 -0.2 288,024 + DDA3937_RS01270 0.64 +0.7 288,024 + DDA3937_RS01270 0.64 -0.2 288,024 + DDA3937_RS01270 0.64 +0.3 288,025 - DDA3937_RS01270 0.64 -1.2 288,025 - DDA3937_RS01270 0.64 -0.9 288,025 - DDA3937_RS01270 0.64 -1.0 288,082 + DDA3937_RS01270 0.69 -1.8 288,225 + DDA3937_RS01270 0.83 -1.3 288,225 + DDA3937_RS01270 0.83 +0.3 288,226 - DDA3937_RS01270 0.84 -0.8 288,247 - DDA3937_RS01270 0.86 -0.0 288,380 - +0.8 288,380 - -1.0 288,394 + -0.5 288,394 + -1.6 288,403 + -0.7 288,403 + -0.1 288,403 + -0.1 288,403 + +0.2 288,403 + -0.2 288,403 + -0.2 288,403 + -0.1 288,404 - -0.3 288,404 - +0.4 288,404 - +0.1 288,404 - -0.5 288,404 - -1.9 288,404 - +0.2 288,404 - +0.7 288,411 + -0.0 288,416 + +0.1 288,416 + +0.1 288,416 + +0.4 288,416 + -0.8 288,416 + -0.6 288,417 - -1.4 288,417 - +0.9 288,419 + +0.8 288,419 + +0.3 288,419 + +0.4 288,419 + +0.0 288,419 + -0.6 288,420 - -0.9 288,420 - -0.5 288,420 - -2.5 288,422 + -1.2 288,422 + +1.4 288,422 + -0.2 288,422 + +0.5 288,422 + +0.1 288,422 + +0.3 288,422 + +0.8 288,422 + +0.3 288,422 + +2.7 288,423 - +0.0 288,423 - -0.6 288,423 - -0.7 288,423 - -0.0 288,423 - -1.3 288,423 - +1.1 288,423 - -0.3 288,423 - -0.8 288,533 + -0.2 288,534 - -0.3 288,537 + -0.3 288,538 - -0.3 288,538 - -0.2 288,545 + -1.2 288,546 - +0.1 288,559 + -0.2 288,596 + +0.0 288,596 + +1.0 288,597 - +0.7 288,598 + +0.1 288,599 - -1.6 288,599 - -0.4 288,599 - -1.1 288,599 - +0.4 288,619 + +0.2 288,620 - -0.3 288,697 + +0.2 288,739 + -2.4 288,739 + -0.6 288,739 + +0.2 288,740 - -2.8 288,749 - -0.1 288,820 - DDA3937_RS01275 0.19 -1.8 288,850 + DDA3937_RS01275 0.23 +1.0 288,972 + DDA3937_RS01275 0.40 -1.9 288,972 + DDA3937_RS01275 0.40 +0.5 289,047 + DDA3937_RS01275 0.51 +0.9 289,048 - DDA3937_RS01275 0.51 +2.2 289,050 + DDA3937_RS01275 0.52 -0.6 289,050 + DDA3937_RS01275 0.52 -1.3 289,083 - DDA3937_RS01275 0.56 +1.3 289,097 + DDA3937_RS01275 0.58 +0.2 289,167 + DDA3937_RS01275 0.68 +0.4 289,168 - DDA3937_RS01275 0.69 +0.4 289,168 - DDA3937_RS01275 0.69 -0.5 289,244 - DDA3937_RS01275 0.79 +0.1 289,246 + DDA3937_RS01275 0.80 +0.5 289,246 + DDA3937_RS01275 0.80 -0.3 289,246 + DDA3937_RS01275 0.80 -0.1 289,246 + DDA3937_RS01275 0.80 -0.1 289,246 + DDA3937_RS01275 0.80 -0.4 289,247 - DDA3937_RS01275 0.80 +1.9 289,349 + -0.1 289,349 + -0.1 289,350 - -0.7 289,357 + +1.2 289,357 + -0.8 289,357 + -0.1 289,357 + -0.8 289,358 - +0.1 289,404 - -1.6 289,499 + +1.1 289,523 + -0.0 289,524 - +0.1 289,524 - -0.8 289,526 + -2.5 289,551 + +0.5 289,552 - +0.3 289,552 - +0.3 289,552 - +0.0 289,555 + +0.5 289,555 + -0.6 289,556 - +0.3 289,556 - -0.8 289,556 - -1.3 289,578 - DDA3937_RS01280 0.12 -0.3 289,597 - DDA3937_RS01280 0.14 -0.4 289,598 + DDA3937_RS01280 0.15 +0.6 289,599 - DDA3937_RS01280 0.15 -0.6 289,599 - DDA3937_RS01280 0.15 -1.2 289,599 - DDA3937_RS01280 0.15 -0.1 289,616 + DDA3937_RS01280 0.17 +1.3 289,632 + DDA3937_RS01280 0.20 -1.7 289,633 - DDA3937_RS01280 0.20 -0.5 289,633 - DDA3937_RS01280 0.20 +0.7 289,704 + DDA3937_RS01280 0.30 +2.0 289,710 + DDA3937_RS01280 0.31 +0.2 289,711 - DDA3937_RS01280 0.32 -0.8 289,714 - DDA3937_RS01280 0.32 -0.2 289,714 - DDA3937_RS01280 0.32 -1.0 289,738 + DDA3937_RS01280 0.36 -0.2 289,797 - DDA3937_RS01280 0.44 -0.8 289,797 - DDA3937_RS01280 0.44 -0.3 289,833 + DDA3937_RS01280 0.50 +1.4 289,859 + DDA3937_RS01280 0.54 -0.9 289,937 + DDA3937_RS01280 0.65 -0.1 289,964 - +0.7 289,991 + DDA3937_RS01280 0.74 +0.7 290,028 - DDA3937_RS01280 0.79 -1.2 290,152 + -1.9 290,152 + -0.6 290,152 + -0.4 290,153 - -0.8 290,153 - +0.8 290,169 - -1.6 290,193 + -0.9 290,193 + +0.7 290,194 - -1.2 290,194 - +1.5 290,217 + +0.2 290,218 - +0.5 290,236 + -0.4 290,237 - -0.9 290,238 + -0.0 290,238 + +0.9 290,238 + -0.7 290,238 + -0.5 290,239 - -3.0 290,239 - -1.6 290,239 - -1.8 290,239 - +0.2
Or see this region's nucleotide sequence