Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01265 and DDA3937_RS01270 are separated by 72 nucleotides DDA3937_RS01270 and DDA3937_RS01275 are separated by 296 nucleotides
DDA3937_RS01265: DDA3937_RS01265 - amino acid ABC transporter permease, at 286,118 to 287,296
_RS01265
DDA3937_RS01270: DDA3937_RS01270 - amino acid ABC transporter substrate-binding protein, at 287,369 to 288,394
_RS01270
DDA3937_RS01275: DDA3937_RS01275 - CTP synthase, at 288,691 to 289,386
_RS01275
Position (kb) 287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.434 kb on + strand, within DDA3937_RS01265 at 286.475 kb on - strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.632 kb on - strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.690 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand at 286.785 kb on + strand, within DDA3937_RS01265 at 286.786 kb on - strand, within DDA3937_RS01265 at 286.813 kb on + strand, within DDA3937_RS01265 at 286.814 kb on - strand, within DDA3937_RS01265 at 286.878 kb on + strand, within DDA3937_RS01265 at 286.900 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.978 kb on + strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 287.005 kb on + strand, within DDA3937_RS01265 at 287.006 kb on - strand at 287.061 kb on + strand, within DDA3937_RS01265 at 287.062 kb on - strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.102 kb on - strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.144 kb on - strand, within DDA3937_RS01265 at 287.188 kb on - strand at 287.188 kb on - strand at 287.230 kb on - strand at 287.230 kb on - strand at 287.255 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.359 kb on - strand at 287.388 kb on + strand at 287.389 kb on - strand at 287.482 kb on - strand, within DDA3937_RS01270 at 287.482 kb on - strand, within DDA3937_RS01270 at 287.489 kb on + strand, within DDA3937_RS01270 at 287.490 kb on - strand, within DDA3937_RS01270 at 287.508 kb on + strand, within DDA3937_RS01270 at 287.509 kb on - strand at 287.744 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.082 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.226 kb on - strand, within DDA3937_RS01270 at 288.247 kb on - strand, within DDA3937_RS01270 at 288.380 kb on - strand at 288.380 kb on - strand at 288.394 kb on + strand at 288.394 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.411 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.417 kb on - strand at 288.417 kb on - strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.420 kb on - strand at 288.420 kb on - strand at 288.420 kb on - strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.533 kb on + strand at 288.534 kb on - strand at 288.537 kb on + strand at 288.538 kb on - strand at 288.538 kb on - strand at 288.545 kb on + strand at 288.546 kb on - strand at 288.559 kb on + strand at 288.596 kb on + strand at 288.596 kb on + strand at 288.597 kb on - strand at 288.598 kb on + strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.619 kb on + strand at 288.620 kb on - strand at 288.697 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.740 kb on - strand at 288.749 kb on - strand at 288.820 kb on - strand, within DDA3937_RS01275 at 288.850 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 289.047 kb on + strand, within DDA3937_RS01275 at 289.048 kb on - strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.083 kb on - strand, within DDA3937_RS01275 at 289.097 kb on + strand, within DDA3937_RS01275 at 289.167 kb on + strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.244 kb on - strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.247 kb on - strand, within DDA3937_RS01275 at 289.349 kb on + strand at 289.349 kb on + strand at 289.350 kb on - strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 286,378 + DDA3937_RS01265 0.22 -0.1 286,378 + DDA3937_RS01265 0.22 +0.3 286,378 + DDA3937_RS01265 0.22 -0.0 286,434 + DDA3937_RS01265 0.27 -0.4 286,475 - DDA3937_RS01265 0.30 -0.9 286,486 + DDA3937_RS01265 0.31 +0.3 286,486 + DDA3937_RS01265 0.31 +1.7 286,486 + DDA3937_RS01265 0.31 +0.7 286,486 + DDA3937_RS01265 0.31 +0.2 286,486 + DDA3937_RS01265 0.31 +0.3 286,486 + DDA3937_RS01265 0.31 -0.2 286,486 + DDA3937_RS01265 0.31 -0.3 286,486 + DDA3937_RS01265 0.31 -0.9 286,486 + DDA3937_RS01265 0.31 -1.4 286,487 - DDA3937_RS01265 0.31 -0.4 286,487 - DDA3937_RS01265 0.31 -0.9 286,487 - DDA3937_RS01265 0.31 -2.1 286,487 - DDA3937_RS01265 0.31 -0.1 286,487 - -1.3 286,487 - DDA3937_RS01265 0.31 +0.2 286,487 - DDA3937_RS01265 0.31 -0.2 286,487 - DDA3937_RS01265 0.31 +0.5 286,487 - DDA3937_RS01265 0.31 -1.1 286,487 - DDA3937_RS01265 0.31 -0.1 286,487 - DDA3937_RS01265 0.31 -0.3 286,488 + DDA3937_RS01265 0.31 -1.1 286,488 + DDA3937_RS01265 0.31 -1.1 286,488 + DDA3937_RS01265 0.31 +1.1 286,489 - DDA3937_RS01265 0.31 +0.4 286,489 - DDA3937_RS01265 0.31 -1.4 286,489 - DDA3937_RS01265 0.31 -1.2 286,632 - DDA3937_RS01265 0.44 -0.9 286,683 + DDA3937_RS01265 0.48 -0.4 286,683 + DDA3937_RS01265 0.48 -0.3 286,690 + DDA3937_RS01265 0.49 +0.6 286,785 + DDA3937_RS01265 0.57 +0.4 286,785 + DDA3937_RS01265 0.57 +0.7 286,785 + +0.7 286,785 + DDA3937_RS01265 0.57 -0.4 286,786 - DDA3937_RS01265 0.57 +0.6 286,813 + DDA3937_RS01265 0.59 -1.4 286,814 - DDA3937_RS01265 0.59 -0.1 286,878 + DDA3937_RS01265 0.64 +0.1 286,900 + DDA3937_RS01265 0.66 +0.8 286,920 + DDA3937_RS01265 0.68 -0.5 286,920 + DDA3937_RS01265 0.68 +1.3 286,920 + DDA3937_RS01265 0.68 +0.0 286,920 + DDA3937_RS01265 0.68 -1.2 286,920 + DDA3937_RS01265 0.68 -0.5 286,920 + DDA3937_RS01265 0.68 +0.4 286,920 + DDA3937_RS01265 0.68 +0.2 286,921 - DDA3937_RS01265 0.68 +0.2 286,921 - DDA3937_RS01265 0.68 +0.3 286,921 - DDA3937_RS01265 0.68 +0.3 286,921 - -0.3 286,921 - DDA3937_RS01265 0.68 -0.7 286,921 - DDA3937_RS01265 0.68 +0.0 286,921 - DDA3937_RS01265 0.68 -1.1 286,921 - DDA3937_RS01265 0.68 +0.1 286,921 - DDA3937_RS01265 0.68 +0.3 286,978 + DDA3937_RS01265 0.73 -0.2 286,979 - DDA3937_RS01265 0.73 +0.8 286,979 - DDA3937_RS01265 0.73 +1.0 286,979 - DDA3937_RS01265 0.73 -0.3 287,005 + DDA3937_RS01265 0.75 +0.3 287,006 - +0.7 287,061 + DDA3937_RS01265 0.80 +0.7 287,062 - DDA3937_RS01265 0.80 -0.7 287,101 + DDA3937_RS01265 0.83 +0.3 287,101 + DDA3937_RS01265 0.83 -0.3 287,102 - DDA3937_RS01265 0.83 -0.4 287,143 + DDA3937_RS01265 0.87 -0.9 287,143 + DDA3937_RS01265 0.87 -0.4 287,143 + DDA3937_RS01265 0.87 +0.5 287,144 - DDA3937_RS01265 0.87 -0.3 287,188 - -0.4 287,188 - +0.7 287,230 - +0.4 287,230 - -0.4 287,255 - -0.1 287,265 - +0.3 287,265 - -0.0 287,265 - +0.1 287,317 + +1.0 287,317 + +0.8 287,317 + -1.2 287,317 + -0.6 287,359 - -0.8 287,388 + -0.4 287,389 - +0.1 287,482 - DDA3937_RS01270 0.11 +0.7 287,482 - DDA3937_RS01270 0.11 +0.7 287,489 + DDA3937_RS01270 0.12 -0.1 287,490 - DDA3937_RS01270 0.12 -1.4 287,508 + DDA3937_RS01270 0.14 +0.6 287,509 - +0.1 287,744 + DDA3937_RS01270 0.37 -0.1 287,776 + DDA3937_RS01270 0.40 -0.0 287,776 + DDA3937_RS01270 0.40 +0.1 287,787 + DDA3937_RS01270 0.41 -0.2 287,787 + DDA3937_RS01270 0.41 +0.6 287,788 - DDA3937_RS01270 0.41 +0.3 287,788 - DDA3937_RS01270 0.41 -3.1 287,788 - DDA3937_RS01270 0.41 -0.3 287,880 + DDA3937_RS01270 0.50 +0.0 287,880 + DDA3937_RS01270 0.50 +0.5 287,881 - DDA3937_RS01270 0.50 +0.7 287,881 - DDA3937_RS01270 0.50 +0.3 287,881 - DDA3937_RS01270 0.50 -0.4 287,881 - DDA3937_RS01270 0.50 +0.1 287,904 + DDA3937_RS01270 0.52 -0.3 287,904 + DDA3937_RS01270 0.52 -0.3 288,022 - DDA3937_RS01270 0.64 +0.5 288,022 - DDA3937_RS01270 0.64 +0.9 288,022 - DDA3937_RS01270 0.64 +1.2 288,022 - DDA3937_RS01270 0.64 +0.9 288,022 - DDA3937_RS01270 0.64 -0.2 288,024 + DDA3937_RS01270 0.64 +0.7 288,024 + DDA3937_RS01270 0.64 -0.2 288,024 + DDA3937_RS01270 0.64 +0.3 288,025 - DDA3937_RS01270 0.64 -1.2 288,025 - DDA3937_RS01270 0.64 -0.9 288,025 - DDA3937_RS01270 0.64 -1.0 288,082 + DDA3937_RS01270 0.69 -1.8 288,225 + DDA3937_RS01270 0.83 -1.3 288,225 + DDA3937_RS01270 0.83 +0.3 288,226 - DDA3937_RS01270 0.84 -0.8 288,247 - DDA3937_RS01270 0.86 -0.0 288,380 - +0.8 288,380 - -1.0 288,394 + -0.5 288,394 + -1.6 288,403 + -0.7 288,403 + -0.1 288,403 + -0.1 288,403 + +0.2 288,403 + -0.2 288,403 + -0.2 288,403 + -0.1 288,404 - -0.3 288,404 - +0.4 288,404 - +0.1 288,404 - -0.5 288,404 - -1.9 288,404 - +0.2 288,404 - +0.7 288,411 + -0.0 288,416 + +0.1 288,416 + +0.1 288,416 + +0.4 288,416 + -0.8 288,416 + -0.6 288,417 - -1.4 288,417 - +0.9 288,419 + +0.8 288,419 + +0.3 288,419 + +0.4 288,419 + +0.0 288,419 + -0.6 288,420 - -0.9 288,420 - -0.5 288,420 - -2.5 288,422 + -1.2 288,422 + +1.4 288,422 + -0.2 288,422 + +0.5 288,422 + +0.1 288,422 + +0.3 288,422 + +0.8 288,422 + +0.3 288,422 + +2.7 288,423 - +0.0 288,423 - -0.6 288,423 - -0.7 288,423 - -0.0 288,423 - -1.3 288,423 - +1.1 288,423 - -0.3 288,423 - -0.8 288,533 + -0.2 288,534 - -0.3 288,537 + -0.3 288,538 - -0.3 288,538 - -0.2 288,545 + -1.2 288,546 - +0.1 288,559 + -0.2 288,596 + +0.0 288,596 + +1.0 288,597 - +0.7 288,598 + +0.1 288,599 - -1.6 288,599 - -0.4 288,599 - -1.1 288,599 - +0.4 288,619 + +0.2 288,620 - -0.3 288,697 + +0.2 288,739 + -2.4 288,739 + -0.6 288,739 + +0.2 288,740 - -2.8 288,749 - -0.1 288,820 - DDA3937_RS01275 0.19 -1.8 288,850 + DDA3937_RS01275 0.23 +1.0 288,972 + DDA3937_RS01275 0.40 -1.9 288,972 + DDA3937_RS01275 0.40 +0.5 289,047 + DDA3937_RS01275 0.51 +0.9 289,048 - DDA3937_RS01275 0.51 +2.2 289,050 + DDA3937_RS01275 0.52 -0.6 289,050 + DDA3937_RS01275 0.52 -1.3 289,083 - DDA3937_RS01275 0.56 +1.3 289,097 + DDA3937_RS01275 0.58 +0.2 289,167 + DDA3937_RS01275 0.68 +0.4 289,168 - DDA3937_RS01275 0.69 +0.4 289,168 - DDA3937_RS01275 0.69 -0.5 289,244 - DDA3937_RS01275 0.79 +0.1 289,246 + DDA3937_RS01275 0.80 +0.5 289,246 + DDA3937_RS01275 0.80 -0.3 289,246 + DDA3937_RS01275 0.80 -0.1 289,246 + DDA3937_RS01275 0.80 -0.1 289,246 + DDA3937_RS01275 0.80 -0.4 289,247 - DDA3937_RS01275 0.80 +1.9 289,349 + -0.1 289,349 + -0.1 289,350 - -0.7 289,357 + +1.2 289,357 + -0.8 289,357 + -0.1 289,357 + -0.8 289,358 - +0.1
Or see this region's nucleotide sequence