Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01260 and DDA3937_RS01265 are separated by 9 nucleotides DDA3937_RS01265 and DDA3937_RS01270 are separated by 72 nucleotides
DDA3937_RS01260: DDA3937_RS01260 - amino acid ABC transporter permease, at 285,014 to 286,108
_RS01260
DDA3937_RS01265: DDA3937_RS01265 - amino acid ABC transporter permease, at 286,118 to 287,296
_RS01265
DDA3937_RS01270: DDA3937_RS01270 - amino acid ABC transporter substrate-binding protein, at 287,369 to 288,394
_RS01270
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 285.295 kb on + strand, within DDA3937_RS01260 at 285.296 kb on - strand, within DDA3937_RS01260 at 285.296 kb on - strand, within DDA3937_RS01260 at 285.333 kb on + strand, within DDA3937_RS01260 at 285.334 kb on - strand, within DDA3937_RS01260 at 285.384 kb on + strand, within DDA3937_RS01260 at 285.384 kb on + strand at 285.384 kb on + strand, within DDA3937_RS01260 at 285.385 kb on - strand, within DDA3937_RS01260 at 285.385 kb on - strand, within DDA3937_RS01260 at 285.493 kb on + strand, within DDA3937_RS01260 at 285.504 kb on - strand, within DDA3937_RS01260 at 285.631 kb on + strand, within DDA3937_RS01260 at 285.632 kb on - strand, within DDA3937_RS01260 at 285.720 kb on + strand, within DDA3937_RS01260 at 285.721 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.745 kb on - strand, within DDA3937_RS01260 at 285.804 kb on - strand, within DDA3937_RS01260 at 285.844 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.853 kb on - strand, within DDA3937_RS01260 at 285.937 kb on + strand, within DDA3937_RS01260 at 285.938 kb on - strand, within DDA3937_RS01260 at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.096 kb on + strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.097 kb on - strand at 286.131 kb on - strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.149 kb on + strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.150 kb on - strand at 286.163 kb on + strand at 286.183 kb on + strand at 286.183 kb on + strand at 286.192 kb on - strand at 286.346 kb on - strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.434 kb on + strand, within DDA3937_RS01265 at 286.475 kb on - strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.632 kb on - strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.690 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand at 286.785 kb on + strand, within DDA3937_RS01265 at 286.786 kb on - strand, within DDA3937_RS01265 at 286.813 kb on + strand, within DDA3937_RS01265 at 286.814 kb on - strand, within DDA3937_RS01265 at 286.878 kb on + strand, within DDA3937_RS01265 at 286.900 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.978 kb on + strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 287.005 kb on + strand, within DDA3937_RS01265 at 287.006 kb on - strand at 287.061 kb on + strand, within DDA3937_RS01265 at 287.062 kb on - strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.102 kb on - strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.144 kb on - strand, within DDA3937_RS01265 at 287.188 kb on - strand at 287.188 kb on - strand at 287.230 kb on - strand at 287.230 kb on - strand at 287.255 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.359 kb on - strand at 287.388 kb on + strand at 287.389 kb on - strand at 287.482 kb on - strand, within DDA3937_RS01270 at 287.482 kb on - strand, within DDA3937_RS01270 at 287.489 kb on + strand, within DDA3937_RS01270 at 287.490 kb on - strand, within DDA3937_RS01270 at 287.508 kb on + strand, within DDA3937_RS01270 at 287.509 kb on - strand at 287.744 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.082 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.226 kb on - strand, within DDA3937_RS01270 at 288.247 kb on - strand, within DDA3937_RS01270
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 285,295 + DDA3937_RS01260 0.26 +0.2 285,296 - DDA3937_RS01260 0.26 -0.8 285,296 - DDA3937_RS01260 0.26 +0.4 285,333 + DDA3937_RS01260 0.29 +0.0 285,334 - DDA3937_RS01260 0.29 +1.0 285,384 + DDA3937_RS01260 0.34 +1.3 285,384 + +0.7 285,384 + DDA3937_RS01260 0.34 +0.7 285,385 - DDA3937_RS01260 0.34 +0.3 285,385 - DDA3937_RS01260 0.34 +0.1 285,493 + DDA3937_RS01260 0.44 +0.7 285,504 - DDA3937_RS01260 0.45 -0.4 285,631 + DDA3937_RS01260 0.56 -0.6 285,632 - DDA3937_RS01260 0.56 -0.1 285,720 + DDA3937_RS01260 0.64 -0.6 285,721 - DDA3937_RS01260 0.65 -0.1 285,745 - DDA3937_RS01260 0.67 -0.0 285,745 - DDA3937_RS01260 0.67 +0.2 285,745 - DDA3937_RS01260 0.67 +0.7 285,745 - DDA3937_RS01260 0.67 -1.1 285,745 - DDA3937_RS01260 0.67 -0.0 285,804 - DDA3937_RS01260 0.72 +0.3 285,844 - DDA3937_RS01260 0.76 -0.7 285,853 - DDA3937_RS01260 0.77 +0.5 285,853 - DDA3937_RS01260 0.77 +1.0 285,853 - DDA3937_RS01260 0.77 -0.3 285,853 - DDA3937_RS01260 0.77 +0.3 285,937 + DDA3937_RS01260 0.84 -0.3 285,938 - DDA3937_RS01260 0.84 +1.2 286,096 + -0.8 286,096 + -0.7 286,096 + -1.2 286,096 + +0.4 286,096 + -0.3 286,096 + -3.2 286,097 - -0.0 286,097 - -0.2 286,097 - -0.3 286,097 - -1.2 286,097 - -0.3 286,097 - -1.3 286,097 - -0.0 286,097 - +0.2 286,131 - -2.1 286,149 + -1.2 286,149 + -0.9 286,149 + -0.8 286,149 + -0.7 286,149 + -0.1 286,149 + +0.7 286,149 + -0.5 286,149 + -0.3 286,149 + +0.1 286,149 + +0.2 286,149 + -0.1 286,149 + +0.4 286,149 + -0.6 286,150 - +0.7 286,150 - +0.1 286,150 - -1.1 286,150 - -0.5 286,150 - +0.8 286,150 - -0.2 286,150 - +1.9 286,150 - +0.7 286,150 - +0.9 286,150 - -0.9 286,150 - +0.0 286,163 + +0.7 286,183 + +0.7 286,183 + -0.6 286,192 - -0.6 286,346 - DDA3937_RS01265 0.19 -2.1 286,378 + DDA3937_RS01265 0.22 -0.1 286,378 + DDA3937_RS01265 0.22 +0.3 286,378 + DDA3937_RS01265 0.22 -0.0 286,434 + DDA3937_RS01265 0.27 -0.4 286,475 - DDA3937_RS01265 0.30 -0.9 286,486 + DDA3937_RS01265 0.31 +0.3 286,486 + DDA3937_RS01265 0.31 +1.7 286,486 + DDA3937_RS01265 0.31 +0.7 286,486 + DDA3937_RS01265 0.31 +0.2 286,486 + DDA3937_RS01265 0.31 +0.3 286,486 + DDA3937_RS01265 0.31 -0.2 286,486 + DDA3937_RS01265 0.31 -0.3 286,486 + DDA3937_RS01265 0.31 -0.9 286,486 + DDA3937_RS01265 0.31 -1.4 286,487 - DDA3937_RS01265 0.31 -0.4 286,487 - DDA3937_RS01265 0.31 -0.9 286,487 - DDA3937_RS01265 0.31 -2.1 286,487 - DDA3937_RS01265 0.31 -0.1 286,487 - -1.3 286,487 - DDA3937_RS01265 0.31 +0.2 286,487 - DDA3937_RS01265 0.31 -0.2 286,487 - DDA3937_RS01265 0.31 +0.5 286,487 - DDA3937_RS01265 0.31 -1.1 286,487 - DDA3937_RS01265 0.31 -0.1 286,487 - DDA3937_RS01265 0.31 -0.3 286,488 + DDA3937_RS01265 0.31 -1.1 286,488 + DDA3937_RS01265 0.31 -1.1 286,488 + DDA3937_RS01265 0.31 +1.1 286,489 - DDA3937_RS01265 0.31 +0.4 286,489 - DDA3937_RS01265 0.31 -1.4 286,489 - DDA3937_RS01265 0.31 -1.2 286,632 - DDA3937_RS01265 0.44 -0.9 286,683 + DDA3937_RS01265 0.48 -0.4 286,683 + DDA3937_RS01265 0.48 -0.3 286,690 + DDA3937_RS01265 0.49 +0.6 286,785 + DDA3937_RS01265 0.57 +0.4 286,785 + DDA3937_RS01265 0.57 +0.7 286,785 + +0.7 286,785 + DDA3937_RS01265 0.57 -0.4 286,786 - DDA3937_RS01265 0.57 +0.6 286,813 + DDA3937_RS01265 0.59 -1.4 286,814 - DDA3937_RS01265 0.59 -0.1 286,878 + DDA3937_RS01265 0.64 +0.1 286,900 + DDA3937_RS01265 0.66 +0.8 286,920 + DDA3937_RS01265 0.68 -0.5 286,920 + DDA3937_RS01265 0.68 +1.3 286,920 + DDA3937_RS01265 0.68 +0.0 286,920 + DDA3937_RS01265 0.68 -1.2 286,920 + DDA3937_RS01265 0.68 -0.5 286,920 + DDA3937_RS01265 0.68 +0.4 286,920 + DDA3937_RS01265 0.68 +0.2 286,921 - DDA3937_RS01265 0.68 +0.2 286,921 - DDA3937_RS01265 0.68 +0.3 286,921 - DDA3937_RS01265 0.68 +0.3 286,921 - -0.3 286,921 - DDA3937_RS01265 0.68 -0.7 286,921 - DDA3937_RS01265 0.68 +0.0 286,921 - DDA3937_RS01265 0.68 -1.1 286,921 - DDA3937_RS01265 0.68 +0.1 286,921 - DDA3937_RS01265 0.68 +0.3 286,978 + DDA3937_RS01265 0.73 -0.2 286,979 - DDA3937_RS01265 0.73 +0.8 286,979 - DDA3937_RS01265 0.73 +1.0 286,979 - DDA3937_RS01265 0.73 -0.3 287,005 + DDA3937_RS01265 0.75 +0.3 287,006 - +0.7 287,061 + DDA3937_RS01265 0.80 +0.7 287,062 - DDA3937_RS01265 0.80 -0.7 287,101 + DDA3937_RS01265 0.83 +0.3 287,101 + DDA3937_RS01265 0.83 -0.3 287,102 - DDA3937_RS01265 0.83 -0.4 287,143 + DDA3937_RS01265 0.87 -0.9 287,143 + DDA3937_RS01265 0.87 -0.4 287,143 + DDA3937_RS01265 0.87 +0.5 287,144 - DDA3937_RS01265 0.87 -0.3 287,188 - -0.4 287,188 - +0.7 287,230 - +0.4 287,230 - -0.4 287,255 - -0.1 287,265 - +0.3 287,265 - -0.0 287,265 - +0.1 287,317 + +1.0 287,317 + +0.8 287,317 + -1.2 287,317 + -0.6 287,359 - -0.8 287,388 + -0.4 287,389 - +0.1 287,482 - DDA3937_RS01270 0.11 +0.7 287,482 - DDA3937_RS01270 0.11 +0.7 287,489 + DDA3937_RS01270 0.12 -0.1 287,490 - DDA3937_RS01270 0.12 -1.4 287,508 + DDA3937_RS01270 0.14 +0.6 287,509 - +0.1 287,744 + DDA3937_RS01270 0.37 -0.1 287,776 + DDA3937_RS01270 0.40 -0.0 287,776 + DDA3937_RS01270 0.40 +0.1 287,787 + DDA3937_RS01270 0.41 -0.2 287,787 + DDA3937_RS01270 0.41 +0.6 287,788 - DDA3937_RS01270 0.41 +0.3 287,788 - DDA3937_RS01270 0.41 -3.1 287,788 - DDA3937_RS01270 0.41 -0.3 287,880 + DDA3937_RS01270 0.50 +0.0 287,880 + DDA3937_RS01270 0.50 +0.5 287,881 - DDA3937_RS01270 0.50 +0.7 287,881 - DDA3937_RS01270 0.50 +0.3 287,881 - DDA3937_RS01270 0.50 -0.4 287,881 - DDA3937_RS01270 0.50 +0.1 287,904 + DDA3937_RS01270 0.52 -0.3 287,904 + DDA3937_RS01270 0.52 -0.3 288,022 - DDA3937_RS01270 0.64 +0.5 288,022 - DDA3937_RS01270 0.64 +0.9 288,022 - DDA3937_RS01270 0.64 +1.2 288,022 - DDA3937_RS01270 0.64 +0.9 288,022 - DDA3937_RS01270 0.64 -0.2 288,024 + DDA3937_RS01270 0.64 +0.7 288,024 + DDA3937_RS01270 0.64 -0.2 288,024 + DDA3937_RS01270 0.64 +0.3 288,025 - DDA3937_RS01270 0.64 -1.2 288,025 - DDA3937_RS01270 0.64 -0.9 288,025 - DDA3937_RS01270 0.64 -1.0 288,082 + DDA3937_RS01270 0.69 -1.8 288,225 + DDA3937_RS01270 0.83 -1.3 288,225 + DDA3937_RS01270 0.83 +0.3 288,226 - DDA3937_RS01270 0.84 -0.8 288,247 - DDA3937_RS01270 0.86 -0.0
Or see this region's nucleotide sequence