Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00895 and DDA3937_RS00900 are separated by 586 nucleotides DDA3937_RS00900 and DDA3937_RS00905 are separated by 65 nucleotides DDA3937_RS00905 and DDA3937_RS00910 are separated by 158 nucleotides
DDA3937_RS00895: DDA3937_RS00895 - aquaporin, at 206,480 to 207,331
_RS00895
DDA3937_RS00900: DDA3937_RS00900 - cell division protein ZapB, at 207,918 to 208,160
_RS00900
DDA3937_RS00905: DDA3937_RS00905 - ribonuclease E activity regulator RraA, at 208,226 to 208,711
_RS00905
DDA3937_RS00910: DDA3937_RS00910 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 208,870 to 209,787
_RS00910
Position (kb) 208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 207.304 kb on + strand at 207.332 kb on - strand at 207.348 kb on + strand at 207.348 kb on + strand at 207.348 kb on + strand at 207.349 kb on - strand at 207.349 kb on - strand at 207.349 kb on - strand at 207.350 kb on + strand at 207.350 kb on + strand at 207.350 kb on + strand at 207.350 kb on + strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.355 kb on + strand at 207.355 kb on + strand at 207.356 kb on - strand at 207.356 kb on - strand at 207.356 kb on - strand at 207.356 kb on - strand at 207.388 kb on + strand at 207.389 kb on - strand at 207.474 kb on + strand at 207.495 kb on - strand at 207.544 kb on + strand at 207.598 kb on + strand at 207.598 kb on + strand at 207.599 kb on - strand at 207.599 kb on - strand at 207.599 kb on - strand at 207.613 kb on + strand at 207.613 kb on + strand at 207.614 kb on - strand at 207.614 kb on - strand at 207.614 kb on - strand at 207.616 kb on + strand at 207.616 kb on + strand at 207.616 kb on + strand at 207.617 kb on - strand at 207.623 kb on + strand at 207.623 kb on + strand at 207.626 kb on + strand at 207.695 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.750 kb on + strand at 207.751 kb on - strand at 207.803 kb on + strand at 207.803 kb on + strand at 207.867 kb on + strand at 207.867 kb on + strand at 207.911 kb on - strand at 207.917 kb on + strand at 207.918 kb on - strand at 207.918 kb on - strand at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.046 kb on + strand, within DDA3937_RS00900 at 208.046 kb on + strand, within DDA3937_RS00900 at 208.091 kb on - strand, within DDA3937_RS00900 at 208.091 kb on - strand at 208.091 kb on - strand, within DDA3937_RS00900 at 208.140 kb on - strand at 208.140 kb on - strand at 208.215 kb on + strand at 208.216 kb on - strand at 208.216 kb on - strand at 208.216 kb on - strand at 208.219 kb on + strand at 208.228 kb on - strand at 208.278 kb on + strand, within DDA3937_RS00905 at 208.278 kb on + strand, within DDA3937_RS00905 at 208.278 kb on + strand, within DDA3937_RS00905 at 208.279 kb on - strand, within DDA3937_RS00905 at 208.279 kb on - strand, within DDA3937_RS00905 at 208.434 kb on + strand, within DDA3937_RS00905 at 208.434 kb on + strand, within DDA3937_RS00905 at 208.435 kb on - strand, within DDA3937_RS00905 at 208.435 kb on - strand at 208.580 kb on - strand, within DDA3937_RS00905 at 208.580 kb on - strand, within DDA3937_RS00905 at 208.624 kb on + strand, within DDA3937_RS00905 at 208.624 kb on + strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.682 kb on - strand at 208.682 kb on - strand at 208.682 kb on - strand at 208.700 kb on - strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.705 kb on - strand at 208.705 kb on - strand at 208.711 kb on + strand at 208.712 kb on - strand at 208.712 kb on - strand at 208.712 kb on - strand at 208.717 kb on + strand at 208.718 kb on - strand at 208.718 kb on - strand at 208.718 kb on - strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.817 kb on + strand at 208.871 kb on + strand at 208.950 kb on + strand at 208.951 kb on - strand at 208.979 kb on + strand, within DDA3937_RS00910 at 208.980 kb on - strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.102 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.271 kb on - strand, within DDA3937_RS00910 at 209.273 kb on + strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.343 kb on - strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.361 kb on + strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.588 kb on + strand, within DDA3937_RS00910 at 209.589 kb on - strand, within DDA3937_RS00910 at 209.595 kb on + strand, within DDA3937_RS00910
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 207,304 + -0.6 207,332 - -0.5 207,348 + -1.4 207,348 + +0.1 207,348 + -0.3 207,349 - +0.7 207,349 - -0.2 207,349 - -0.0 207,350 + -0.9 207,350 + +0.1 207,350 + +0.1 207,350 + +0.6 207,351 - -0.3 207,351 - -0.3 207,351 - -1.4 207,351 - -0.5 207,351 - -0.3 207,355 + -0.3 207,355 + +0.7 207,356 - -0.4 207,356 - +0.5 207,356 - +0.1 207,356 - +0.1 207,388 + -0.1 207,389 - -1.3 207,474 + -1.4 207,495 - +0.1 207,544 + +0.6 207,598 + -0.3 207,598 + +0.4 207,599 - -0.2 207,599 - +1.4 207,599 - -0.5 207,613 + +0.3 207,613 + -1.0 207,614 - +0.1 207,614 - -0.7 207,614 - +0.2 207,616 + -0.3 207,616 + -0.4 207,616 + -1.1 207,617 - -0.7 207,623 + -0.2 207,623 + -0.2 207,626 + +0.1 207,695 + -0.3 207,732 + +1.2 207,732 + +0.5 207,732 + +0.4 207,732 + -0.5 207,732 + -1.2 207,732 + -0.4 207,732 + +0.7 207,750 + -0.5 207,751 - -0.8 207,803 + -0.9 207,803 + +0.1 207,867 + -1.0 207,867 + +0.9 207,911 - +0.7 207,917 + -0.1 207,918 - -0.6 207,918 - -1.5 208,022 + DDA3937_RS00900 0.43 -1.1 208,022 + DDA3937_RS00900 0.43 -1.3 208,022 + DDA3937_RS00900 0.43 -0.1 208,022 + DDA3937_RS00900 0.43 -0.9 208,022 + DDA3937_RS00900 0.43 -1.5 208,022 + DDA3937_RS00900 0.43 -0.7 208,022 + DDA3937_RS00900 0.43 -1.8 208,023 - DDA3937_RS00900 0.43 -0.9 208,023 - DDA3937_RS00900 0.43 -1.3 208,023 - +1.7 208,023 - DDA3937_RS00900 0.43 -0.3 208,023 - DDA3937_RS00900 0.43 -0.9 208,023 - DDA3937_RS00900 0.43 -1.7 208,023 - DDA3937_RS00900 0.43 -1.5 208,046 + DDA3937_RS00900 0.53 -1.1 208,046 + DDA3937_RS00900 0.53 +0.6 208,091 - DDA3937_RS00900 0.71 -3.2 208,091 - +0.1 208,091 - DDA3937_RS00900 0.71 -1.1 208,140 - -1.3 208,140 - -0.3 208,215 + +0.1 208,216 - +0.4 208,216 - -0.3 208,216 - -0.5 208,219 + -0.5 208,228 - -0.4 208,278 + DDA3937_RS00905 0.11 -0.5 208,278 + DDA3937_RS00905 0.11 +0.1 208,278 + DDA3937_RS00905 0.11 +0.1 208,279 - DDA3937_RS00905 0.11 -1.1 208,279 - DDA3937_RS00905 0.11 -1.5 208,434 + DDA3937_RS00905 0.43 +1.3 208,434 + DDA3937_RS00905 0.43 -0.8 208,435 - DDA3937_RS00905 0.43 +1.9 208,435 - +0.7 208,580 - DDA3937_RS00905 0.73 -1.1 208,580 - DDA3937_RS00905 0.73 -0.5 208,624 + DDA3937_RS00905 0.82 -1.4 208,624 + DDA3937_RS00905 0.82 -0.7 208,625 - DDA3937_RS00905 0.82 +0.1 208,625 - DDA3937_RS00905 0.82 +0.2 208,625 - DDA3937_RS00905 0.82 -0.8 208,625 - DDA3937_RS00905 0.82 -0.2 208,677 + -2.3 208,677 + -0.7 208,677 + +0.3 208,677 + +0.7 208,677 + -0.2 208,677 + -0.5 208,677 + +0.2 208,678 - -0.6 208,678 - -0.2 208,678 - +0.7 208,678 - +0.7 208,681 + +0.4 208,681 + -0.6 208,681 + +0.3 208,681 + -0.6 208,682 - -0.0 208,682 - -0.7 208,682 - -1.3 208,700 - +0.3 208,704 + +0.1 208,704 + -1.1 208,704 + +0.2 208,704 + -0.6 208,705 - -0.5 208,705 - -0.2 208,711 + -0.1 208,712 - -0.2 208,712 - -0.1 208,712 - +0.5 208,717 + +0.9 208,718 - +0.1 208,718 - -0.4 208,718 - -0.3 208,751 + -0.5 208,751 + +0.2 208,751 + +0.3 208,751 + +0.7 208,751 + -0.4 208,751 + +1.1 208,751 + +0.7 208,751 + +1.0 208,752 - -0.7 208,752 - -0.2 208,752 - +0.7 208,752 - -1.3 208,752 - -0.5 208,752 - +1.1 208,752 - -0.4 208,752 - +1.1 208,752 - -1.5 208,817 + -0.4 208,871 + +2.3 208,950 + +0.3 208,951 - +0.6 208,979 + DDA3937_RS00910 0.12 -0.1 208,980 - DDA3937_RS00910 0.12 +1.7 209,037 + DDA3937_RS00910 0.18 +0.3 209,037 + DDA3937_RS00910 0.18 -0.3 209,037 + DDA3937_RS00910 0.18 -0.1 209,038 - DDA3937_RS00910 0.18 +0.7 209,038 - DDA3937_RS00910 0.18 +0.1 209,045 + DDA3937_RS00910 0.19 -0.1 209,045 + DDA3937_RS00910 0.19 +0.3 209,045 + DDA3937_RS00910 0.19 +0.2 209,092 + DDA3937_RS00910 0.24 +1.3 209,092 + DDA3937_RS00910 0.24 -0.8 209,092 + DDA3937_RS00910 0.24 +0.5 209,092 + DDA3937_RS00910 0.24 +0.1 209,093 - DDA3937_RS00910 0.24 +0.1 209,093 - DDA3937_RS00910 0.24 -0.6 209,093 - DDA3937_RS00910 0.24 +0.0 209,093 - DDA3937_RS00910 0.24 -0.6 209,102 + DDA3937_RS00910 0.25 +0.4 209,270 + DDA3937_RS00910 0.44 +0.4 209,270 + DDA3937_RS00910 0.44 -2.1 209,270 + DDA3937_RS00910 0.44 -0.2 209,270 + DDA3937_RS00910 0.44 +0.1 209,270 + DDA3937_RS00910 0.44 +0.5 209,271 - DDA3937_RS00910 0.44 -0.0 209,273 + DDA3937_RS00910 0.44 -0.1 209,274 - DDA3937_RS00910 0.44 -0.5 209,274 - DDA3937_RS00910 0.44 +0.1 209,336 + DDA3937_RS00910 0.51 -0.4 209,336 + DDA3937_RS00910 0.51 +0.9 209,336 + DDA3937_RS00910 0.51 +0.5 209,336 + DDA3937_RS00910 0.51 +0.0 209,336 + DDA3937_RS00910 0.51 -0.3 209,336 + DDA3937_RS00910 0.51 +0.6 209,337 - DDA3937_RS00910 0.51 +0.1 209,337 - DDA3937_RS00910 0.51 +0.7 209,337 - DDA3937_RS00910 0.51 -0.6 209,337 - DDA3937_RS00910 0.51 -0.2 209,337 - DDA3937_RS00910 0.51 -0.6 209,337 - DDA3937_RS00910 0.51 -0.1 209,337 - DDA3937_RS00910 0.51 +0.2 209,337 - DDA3937_RS00910 0.51 -2.6 209,343 - DDA3937_RS00910 0.52 -0.2 209,349 + DDA3937_RS00910 0.52 +0.1 209,349 + DDA3937_RS00910 0.52 -0.8 209,361 + DDA3937_RS00910 0.53 -0.2 209,362 - DDA3937_RS00910 0.54 +0.2 209,362 - DDA3937_RS00910 0.54 +1.4 209,363 + DDA3937_RS00910 0.54 -0.9 209,363 + DDA3937_RS00910 0.54 +0.4 209,363 + DDA3937_RS00910 0.54 +0.6 209,363 + DDA3937_RS00910 0.54 +1.4 209,363 + DDA3937_RS00910 0.54 -0.7 209,363 + DDA3937_RS00910 0.54 -0.3 209,364 - DDA3937_RS00910 0.54 +0.4 209,364 - DDA3937_RS00910 0.54 +0.1 209,364 - DDA3937_RS00910 0.54 +0.5 209,364 - DDA3937_RS00910 0.54 -0.3 209,364 - DDA3937_RS00910 0.54 -1.3 209,364 - DDA3937_RS00910 0.54 -2.0 209,364 - DDA3937_RS00910 0.54 -0.2 209,364 - +1.5 209,364 - DDA3937_RS00910 0.54 -0.2 209,364 - DDA3937_RS00910 0.54 +0.7 209,364 - DDA3937_RS00910 0.54 -1.6 209,367 + DDA3937_RS00910 0.54 +1.5 209,367 + DDA3937_RS00910 0.54 +0.2 209,367 + DDA3937_RS00910 0.54 -1.6 209,367 + DDA3937_RS00910 0.54 -0.6 209,368 - DDA3937_RS00910 0.54 +0.0 209,368 - DDA3937_RS00910 0.54 -1.3 209,368 - DDA3937_RS00910 0.54 -0.6 209,588 + DDA3937_RS00910 0.78 +0.1 209,589 - DDA3937_RS00910 0.78 -0.4 209,595 + DDA3937_RS00910 0.79 -0.3
Or see this region's nucleotide sequence