Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00820 and DDA3937_RS00825 overlap by 4 nucleotides DDA3937_RS00825 and DDA3937_RS00830 overlap by 4 nucleotides DDA3937_RS00830 and DDA3937_RS00835 are separated by 202 nucleotides DDA3937_RS00835 and DDA3937_RS00840 are separated by 129 nucleotides
DDA3937_RS00820: DDA3937_RS00820 - phage tail protein, at 191,715 to 193,073
_RS00820
DDA3937_RS00825: DDA3937_RS00825 - tail fiber assembly protein, at 193,070 to 193,465
_RS00825
DDA3937_RS00830: DDA3937_RS00830 - NUDIX domain-containing protein, at 193,462 to 193,926
_RS00830
DDA3937_RS00835: DDA3937_RS00835 - 2TM domain-containing protein, at 194,129 to 194,599
_RS00835
DDA3937_RS00840: DDA3937_RS00840 - CDF family cation-efflux transporter FieF, at 194,729 to 195,631
_RS00840
Position (kb) 193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 192.462 kb on + strand, within DDA3937_RS00820 at 192.462 kb on + strand, within DDA3937_RS00820 at 192.462 kb on + strand, within DDA3937_RS00820 at 192.463 kb on - strand, within DDA3937_RS00820 at 192.463 kb on - strand, within DDA3937_RS00820 at 192.552 kb on + strand, within DDA3937_RS00820 at 192.552 kb on + strand, within DDA3937_RS00820 at 192.552 kb on + strand, within DDA3937_RS00820 at 192.603 kb on + strand, within DDA3937_RS00820 at 192.609 kb on - strand, within DDA3937_RS00820 at 192.634 kb on - strand, within DDA3937_RS00820 at 192.634 kb on - strand, within DDA3937_RS00820 at 192.634 kb on - strand, within DDA3937_RS00820 at 192.656 kb on + strand, within DDA3937_RS00820 at 192.658 kb on + strand, within DDA3937_RS00820 at 192.658 kb on + strand, within DDA3937_RS00820 at 192.659 kb on - strand, within DDA3937_RS00820 at 192.659 kb on - strand, within DDA3937_RS00820 at 192.667 kb on + strand, within DDA3937_RS00820 at 192.678 kb on + strand, within DDA3937_RS00820 at 192.678 kb on + strand, within DDA3937_RS00820 at 192.678 kb on + strand, within DDA3937_RS00820 at 192.678 kb on + strand, within DDA3937_RS00820 at 192.678 kb on + strand, within DDA3937_RS00820 at 192.678 kb on + strand, within DDA3937_RS00820 at 192.678 kb on + strand, within DDA3937_RS00820 at 192.679 kb on - strand, within DDA3937_RS00820 at 192.679 kb on - strand, within DDA3937_RS00820 at 192.679 kb on - strand, within DDA3937_RS00820 at 192.774 kb on - strand, within DDA3937_RS00820 at 192.774 kb on - strand, within DDA3937_RS00820 at 192.806 kb on + strand, within DDA3937_RS00820 at 192.852 kb on - strand, within DDA3937_RS00820 at 192.947 kb on + strand at 192.947 kb on + strand at 192.948 kb on - strand at 192.949 kb on + strand at 192.950 kb on - strand at 192.950 kb on - strand at 192.950 kb on - strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.967 kb on + strand at 192.968 kb on - strand at 192.968 kb on - strand at 192.968 kb on - strand at 192.968 kb on - strand at 192.995 kb on + strand at 192.995 kb on + strand at 192.995 kb on + strand at 192.995 kb on + strand at 192.995 kb on + strand at 192.995 kb on + strand at 192.995 kb on + strand at 192.996 kb on - strand at 192.996 kb on - strand at 192.996 kb on - strand at 192.996 kb on - strand at 192.996 kb on - strand at 192.996 kb on - strand at 192.996 kb on - strand at 192.996 kb on - strand at 193.062 kb on + strand at 193.063 kb on - strand at 193.075 kb on + strand at 193.075 kb on + strand at 193.076 kb on - strand at 193.080 kb on + strand at 193.080 kb on + strand at 193.081 kb on - strand at 193.082 kb on + strand at 193.082 kb on + strand at 193.083 kb on - strand at 193.112 kb on - strand, within DDA3937_RS00825 at 193.114 kb on + strand, within DDA3937_RS00825 at 193.114 kb on + strand, within DDA3937_RS00825 at 193.114 kb on + strand, within DDA3937_RS00825 at 193.114 kb on + strand, within DDA3937_RS00825 at 193.205 kb on + strand, within DDA3937_RS00825 at 193.211 kb on + strand, within DDA3937_RS00825 at 193.212 kb on - strand, within DDA3937_RS00825 at 193.212 kb on - strand, within DDA3937_RS00825 at 193.229 kb on - strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.256 kb on + strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.257 kb on - strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.258 kb on + strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.259 kb on - strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.290 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.335 kb on + strand, within DDA3937_RS00825 at 193.336 kb on - strand, within DDA3937_RS00825 at 193.336 kb on - strand, within DDA3937_RS00825 at 193.348 kb on + strand, within DDA3937_RS00825 at 193.363 kb on + strand, within DDA3937_RS00825 at 193.391 kb on + strand, within DDA3937_RS00825 at 193.391 kb on + strand, within DDA3937_RS00825 at 193.392 kb on - strand, within DDA3937_RS00825 at 193.411 kb on + strand, within DDA3937_RS00825 at 193.473 kb on + strand at 193.473 kb on + strand at 193.473 kb on + strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.474 kb on - strand at 193.523 kb on + strand, within DDA3937_RS00830 at 193.823 kb on + strand, within DDA3937_RS00830 at 193.823 kb on + strand, within DDA3937_RS00830 at 193.867 kb on + strand, within DDA3937_RS00830 at 193.868 kb on - strand, within DDA3937_RS00830 at 193.868 kb on - strand, within DDA3937_RS00830 at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.941 kb on + strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.942 kb on - strand at 193.943 kb on + strand at 193.943 kb on + strand at 193.943 kb on + strand at 193.944 kb on - strand at 193.950 kb on + strand at 193.950 kb on + strand at 193.958 kb on - strand at 194.073 kb on + strand at 194.073 kb on + strand at 194.073 kb on + strand at 194.074 kb on - strand at 194.074 kb on - strand at 194.074 kb on - strand at 194.115 kb on - strand at 194.115 kb on - strand at 194.478 kb on + strand, within DDA3937_RS00835 at 194.479 kb on - strand at 194.479 kb on - strand, within DDA3937_RS00835 at 194.479 kb on - strand, within DDA3937_RS00835 at 194.586 kb on + strand at 194.598 kb on - strand at 194.625 kb on + strand at 194.626 kb on - strand at 194.626 kb on - strand at 194.626 kb on - strand at 194.662 kb on + strand at 194.662 kb on + strand at 194.662 kb on + strand at 194.663 kb on - strand at 194.697 kb on - strand at 194.698 kb on + strand at 194.698 kb on + strand at 194.698 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.723 kb on + strand at 194.724 kb on - strand at 194.728 kb on + strand at 194.729 kb on - strand at 194.729 kb on - strand at 194.729 kb on - strand at 194.742 kb on - strand at 194.796 kb on + strand at 194.797 kb on - strand at 194.803 kb on + strand at 194.804 kb on - strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.813 kb on + strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.814 kb on - strand at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.825 kb on + strand, within DDA3937_RS00840 at 194.826 kb on - strand, within DDA3937_RS00840 at 194.912 kb on + strand, within DDA3937_RS00840
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 192,462 + DDA3937_RS00820 0.55 +0.2 192,462 + DDA3937_RS00820 0.55 +1.7 192,462 + DDA3937_RS00820 0.55 +0.7 192,463 - DDA3937_RS00820 0.55 -0.3 192,463 - DDA3937_RS00820 0.55 -0.4 192,552 + DDA3937_RS00820 0.62 -0.5 192,552 + DDA3937_RS00820 0.62 -0.6 192,552 + DDA3937_RS00820 0.62 +0.7 192,603 + DDA3937_RS00820 0.65 -1.3 192,609 - DDA3937_RS00820 0.66 -1.1 192,634 - DDA3937_RS00820 0.68 +0.9 192,634 - DDA3937_RS00820 0.68 -0.4 192,634 - DDA3937_RS00820 0.68 -1.9 192,656 + DDA3937_RS00820 0.69 +1.0 192,658 + DDA3937_RS00820 0.69 -0.2 192,658 + DDA3937_RS00820 0.69 +0.0 192,659 - DDA3937_RS00820 0.69 -1.1 192,659 - DDA3937_RS00820 0.69 -0.3 192,667 + DDA3937_RS00820 0.70 +0.4 192,678 + DDA3937_RS00820 0.71 +0.9 192,678 + DDA3937_RS00820 0.71 +1.4 192,678 + DDA3937_RS00820 0.71 +0.6 192,678 + DDA3937_RS00820 0.71 +0.4 192,678 + DDA3937_RS00820 0.71 -0.5 192,678 + DDA3937_RS00820 0.71 -0.1 192,678 + DDA3937_RS00820 0.71 -0.0 192,679 - DDA3937_RS00820 0.71 -0.3 192,679 - DDA3937_RS00820 0.71 +0.3 192,679 - DDA3937_RS00820 0.71 -0.2 192,774 - DDA3937_RS00820 0.78 -0.3 192,774 - DDA3937_RS00820 0.78 -0.2 192,806 + DDA3937_RS00820 0.80 +0.1 192,852 - DDA3937_RS00820 0.84 -2.1 192,947 + +0.7 192,947 + +0.4 192,948 - -0.6 192,949 + -0.7 192,950 - +0.8 192,950 - +0.4 192,950 - -1.3 192,967 + +0.7 192,967 + +0.2 192,967 + +0.2 192,967 + -1.1 192,967 + +0.8 192,967 + +0.1 192,967 + -0.0 192,967 + -0.9 192,967 + +0.3 192,968 - +0.3 192,968 - +0.2 192,968 - +0.6 192,968 - +0.4 192,995 + +0.1 192,995 + -0.2 192,995 + -0.1 192,995 + +0.3 192,995 + +0.7 192,995 + -1.2 192,995 + -0.4 192,996 - -1.0 192,996 - -0.6 192,996 - +0.1 192,996 - -0.3 192,996 - -1.1 192,996 - -0.8 192,996 - -0.3 192,996 - -0.3 193,062 + +0.3 193,063 - -0.6 193,075 + -0.2 193,075 + -0.3 193,076 - -0.0 193,080 + -0.9 193,080 + +0.4 193,081 - -0.5 193,082 + +0.0 193,082 + -0.9 193,083 - +0.1 193,112 - DDA3937_RS00825 0.11 +0.4 193,114 + DDA3937_RS00825 0.11 -1.3 193,114 + DDA3937_RS00825 0.11 -0.3 193,114 + DDA3937_RS00825 0.11 -0.7 193,114 + DDA3937_RS00825 0.11 -0.0 193,205 + DDA3937_RS00825 0.34 +1.4 193,211 + DDA3937_RS00825 0.36 +1.2 193,212 - DDA3937_RS00825 0.36 -0.3 193,212 - DDA3937_RS00825 0.36 +0.5 193,229 - DDA3937_RS00825 0.40 -0.4 193,256 + DDA3937_RS00825 0.47 +1.5 193,256 + DDA3937_RS00825 0.47 -0.6 193,256 + DDA3937_RS00825 0.47 -1.6 193,256 + DDA3937_RS00825 0.47 -1.2 193,257 - DDA3937_RS00825 0.47 +0.2 193,257 - DDA3937_RS00825 0.47 -0.4 193,257 - DDA3937_RS00825 0.47 +0.5 193,258 + DDA3937_RS00825 0.47 -0.3 193,258 + DDA3937_RS00825 0.47 +1.0 193,258 + DDA3937_RS00825 0.47 -0.3 193,258 + DDA3937_RS00825 0.47 -0.6 193,258 + DDA3937_RS00825 0.47 +0.7 193,259 - DDA3937_RS00825 0.48 +0.1 193,259 - DDA3937_RS00825 0.48 +1.7 193,259 - DDA3937_RS00825 0.48 -1.1 193,290 + DDA3937_RS00825 0.56 -2.1 193,290 + DDA3937_RS00825 0.56 -0.9 193,290 + DDA3937_RS00825 0.56 -0.3 193,290 + DDA3937_RS00825 0.56 +0.7 193,290 + DDA3937_RS00825 0.56 +0.1 193,335 + DDA3937_RS00825 0.67 +0.4 193,335 + DDA3937_RS00825 0.67 -1.1 193,335 + DDA3937_RS00825 0.67 -0.3 193,336 - DDA3937_RS00825 0.67 +0.3 193,336 - DDA3937_RS00825 0.67 +1.2 193,348 + DDA3937_RS00825 0.70 -0.4 193,363 + DDA3937_RS00825 0.74 -0.6 193,391 + DDA3937_RS00825 0.81 -1.2 193,391 + DDA3937_RS00825 0.81 -0.8 193,392 - DDA3937_RS00825 0.81 -1.8 193,411 + DDA3937_RS00825 0.86 -0.4 193,473 + +0.5 193,473 + +0.2 193,473 + +0.5 193,474 - -0.4 193,474 - -0.4 193,474 - +0.0 193,474 - -0.1 193,474 - -0.2 193,523 + DDA3937_RS00830 0.13 +0.2 193,823 + DDA3937_RS00830 0.78 -0.8 193,823 + DDA3937_RS00830 0.78 -0.4 193,867 + DDA3937_RS00830 0.87 -2.3 193,868 - DDA3937_RS00830 0.87 -3.1 193,868 - DDA3937_RS00830 0.87 -0.3 193,941 + +0.3 193,941 + +0.0 193,941 + +0.0 193,941 + -0.9 193,941 + -0.5 193,942 - -0.4 193,942 - +0.7 193,942 - -0.3 193,942 - -0.1 193,943 + +0.2 193,943 + -0.7 193,943 + +0.7 193,944 - +0.3 193,950 + -1.1 193,950 + -1.6 193,958 - +0.0 194,073 + -0.1 194,073 + -0.1 194,073 + -0.5 194,074 - -0.9 194,074 - +0.4 194,074 - -1.6 194,115 - +1.1 194,115 - -1.3 194,478 + DDA3937_RS00835 0.74 -0.1 194,479 - +1.7 194,479 - DDA3937_RS00835 0.74 -0.9 194,479 - DDA3937_RS00835 0.74 -0.6 194,586 + -1.1 194,598 - +0.7 194,625 + -0.5 194,626 - +0.1 194,626 - -0.7 194,626 - -0.6 194,662 + -0.2 194,662 + -0.3 194,662 + -0.6 194,663 - +0.3 194,697 - -0.7 194,698 + -1.6 194,698 + -0.1 194,698 + -0.1 194,723 + -0.4 194,723 + -0.3 194,723 + +0.2 194,723 + -0.8 194,724 - -0.3 194,728 + -2.1 194,729 - +1.5 194,729 - -0.0 194,729 - +0.1 194,742 - +0.1 194,796 + -1.1 194,797 - -0.1 194,803 + -0.4 194,804 - -0.0 194,813 + -1.1 194,813 + -0.2 194,813 + -0.1 194,813 + +0.7 194,813 + +0.6 194,813 + -0.2 194,813 + -0.9 194,814 - +0.2 194,814 - +0.3 194,814 - -0.2 194,814 - -1.1 194,814 - -1.3 194,825 + DDA3937_RS00840 0.11 +0.3 194,825 + DDA3937_RS00840 0.11 -1.3 194,825 + DDA3937_RS00840 0.11 -0.6 194,825 + DDA3937_RS00840 0.11 -0.6 194,826 - DDA3937_RS00840 0.11 -0.2 194,912 + DDA3937_RS00840 0.20 -0.1
Or see this region's nucleotide sequence