Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00790 and DDA3937_RS00795 are separated by 358 nucleotides
DDA3937_RS00790: DDA3937_RS00790 - hypothetical protein, at 185,220 to 185,708
_RS00790
DDA3937_RS00795: DDA3937_RS00795 - phage tail protein, at 186,067 to 186,537
_RS00795
Position (kb) 186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.070 kb on + strand at 185.098 kb on - strand at 185.154 kb on + strand at 185.154 kb on + strand at 185.154 kb on + strand at 185.155 kb on - strand at 185.155 kb on - strand at 185.155 kb on - strand at 185.156 kb on + strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.187 kb on - strand at 185.222 kb on - strand at 185.334 kb on - strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.418 kb on - strand, within DDA3937_RS00790 at 185.418 kb on - strand, within DDA3937_RS00790 at 185.419 kb on + strand, within DDA3937_RS00790 at 185.419 kb on + strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.431 kb on + strand, within DDA3937_RS00790 at 185.431 kb on + strand, within DDA3937_RS00790 at 185.432 kb on - strand, within DDA3937_RS00790 at 185.465 kb on - strand, within DDA3937_RS00790 at 185.557 kb on + strand, within DDA3937_RS00790 at 185.564 kb on + strand, within DDA3937_RS00790 at 185.665 kb on - strand at 185.753 kb on + strand at 185.756 kb on + strand at 185.756 kb on + strand at 185.757 kb on - strand at 185.862 kb on + strand at 185.863 kb on - strand at 185.863 kb on - strand at 185.866 kb on + strand at 185.895 kb on + strand at 185.993 kb on - strand at 186.011 kb on - strand at 186.011 kb on - strand at 186.066 kb on + strand at 186.066 kb on + strand at 186.079 kb on + strand at 186.080 kb on - strand at 186.081 kb on + strand at 186.081 kb on + strand at 186.081 kb on + strand at 186.201 kb on + strand, within DDA3937_RS00795 at 186.202 kb on - strand, within DDA3937_RS00795 at 186.347 kb on - strand, within DDA3937_RS00795 at 186.394 kb on + strand, within DDA3937_RS00795 at 186.395 kb on - strand, within DDA3937_RS00795 at 186.397 kb on - strand, within DDA3937_RS00795 at 186.437 kb on + strand, within DDA3937_RS00795 at 186.517 kb on + strand at 186.518 kb on - strand at 186.518 kb on - strand at 186.526 kb on - strand at 186.582 kb on + strand at 186.583 kb on - strand at 186.583 kb on - strand at 186.620 kb on + strand at 186.651 kb on + strand at 186.681 kb on + strand at 186.681 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.696 kb on - strand at 186.835 kb on + strand at 186.835 kb on + strand at 186.836 kb on - strand at 186.836 kb on - strand at 186.904 kb on + strand at 186.905 kb on - strand at 186.933 kb on + strand at 186.990 kb on - strand at 187.044 kb on - strand at 187.160 kb on + strand at 187.204 kb on + strand at 187.234 kb on - strand at 187.238 kb on - strand at 187.339 kb on - strand at 187.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 185,070 + -0.9 185,098 - -1.6 185,154 + -0.7 185,154 + -2.9 185,154 + -0.5 185,155 - +0.9 185,155 - -0.6 185,155 - -0.5 185,156 + +1.0 185,157 - -2.6 185,157 - -0.5 185,157 - +1.3 185,157 - -1.2 185,157 - -1.3 185,187 - -0.1 185,222 - +0.2 185,334 - DDA3937_RS00790 0.23 -0.1 185,417 + DDA3937_RS00790 0.40 -0.6 185,417 + DDA3937_RS00790 0.40 +0.7 185,417 + DDA3937_RS00790 0.40 +1.2 185,418 - DDA3937_RS00790 0.40 -0.4 185,418 - DDA3937_RS00790 0.40 -0.8 185,419 + DDA3937_RS00790 0.41 -1.0 185,419 + DDA3937_RS00790 0.41 -2.1 185,420 - DDA3937_RS00790 0.41 +2.0 185,420 - DDA3937_RS00790 0.41 +0.4 185,420 - DDA3937_RS00790 0.41 -0.9 185,431 + DDA3937_RS00790 0.43 +0.7 185,431 + DDA3937_RS00790 0.43 +0.7 185,432 - DDA3937_RS00790 0.43 -2.0 185,465 - DDA3937_RS00790 0.50 +0.9 185,557 + DDA3937_RS00790 0.69 -1.2 185,564 + DDA3937_RS00790 0.70 +0.1 185,665 - +0.7 185,753 + -0.2 185,756 + -0.1 185,756 + -0.3 185,757 - +0.6 185,862 + -1.3 185,863 - +0.9 185,863 - -0.3 185,866 + -0.5 185,895 + +0.3 185,993 - +0.0 186,011 - +0.1 186,011 - -0.2 186,066 + -0.9 186,066 + +1.2 186,079 + +0.3 186,080 - -0.0 186,081 + -1.4 186,081 + +0.6 186,081 + -0.1 186,201 + DDA3937_RS00795 0.28 -0.9 186,202 - DDA3937_RS00795 0.29 -0.3 186,347 - DDA3937_RS00795 0.59 -0.3 186,394 + DDA3937_RS00795 0.69 -1.3 186,395 - DDA3937_RS00795 0.70 -0.3 186,397 - DDA3937_RS00795 0.70 -0.9 186,437 + DDA3937_RS00795 0.79 -1.4 186,517 + -1.1 186,518 - -0.1 186,518 - +1.1 186,526 - +2.1 186,582 + -0.3 186,583 - -1.4 186,583 - -0.1 186,620 + -1.3 186,651 + -0.1 186,681 + +0.0 186,681 + -0.8 186,695 + -1.9 186,695 + +1.3 186,695 + -0.6 186,695 + +0.1 186,696 - -1.6 186,835 + +1.2 186,835 + -0.9 186,836 - +0.4 186,836 - +2.1 186,904 + +0.6 186,905 - -0.1 186,933 + -0.7 186,990 - +0.3 187,044 - -0.3 187,160 + -1.4 187,204 + +0.1 187,234 - -0.2 187,238 - -0.9 187,339 - -2.1 187,340 + +2.7
Or see this region's nucleotide sequence