Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00650 and DDA3937_RS00655 are separated by 118 nucleotides DDA3937_RS00655 and DDA3937_RS00660 are separated by 403 nucleotides DDA3937_RS00660 and DDA3937_RS00665 are separated by 78 nucleotides
DDA3937_RS00650: DDA3937_RS00650 - RNA polymerase sigma factor RpoH, at 150,265 to 151,122
_RS00650
DDA3937_RS00655: DDA3937_RS00655 - aspartate 1-decarboxylase autocleavage activator PanM, at 151,241 to 151,678
_RS00655
DDA3937_RS00660: DDA3937_RS00660 - branched-chain amino acid ABC transporter substrate-binding protein, at 152,082 to 153,194
_RS00660
DDA3937_RS00665: DDA3937_RS00665 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 153,273 to 154,199
_RS00665
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 151.120 kb on + strand at 151.121 kb on - strand at 151.133 kb on + strand at 151.134 kb on - strand at 151.214 kb on + strand at 151.222 kb on + strand at 151.222 kb on + strand at 151.223 kb on - strand at 151.242 kb on + strand at 151.242 kb on + strand at 151.243 kb on - strand at 151.243 kb on - strand at 151.243 kb on - strand at 151.243 kb on - strand at 151.284 kb on + strand at 151.284 kb on + strand at 151.285 kb on - strand, within DDA3937_RS00655 at 151.285 kb on - strand, within DDA3937_RS00655 at 151.285 kb on - strand, within DDA3937_RS00655 at 151.428 kb on + strand, within DDA3937_RS00655 at 151.428 kb on + strand, within DDA3937_RS00655 at 151.429 kb on - strand, within DDA3937_RS00655 at 151.429 kb on - strand, within DDA3937_RS00655 at 151.429 kb on - strand, within DDA3937_RS00655 at 151.432 kb on + strand, within DDA3937_RS00655 at 151.432 kb on + strand, within DDA3937_RS00655 at 151.678 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.708 kb on + strand at 151.709 kb on - strand at 151.709 kb on - strand at 151.709 kb on - strand at 151.709 kb on - strand at 151.713 kb on + strand at 151.714 kb on - strand at 151.740 kb on + strand at 151.806 kb on - strand at 151.818 kb on + strand at 151.819 kb on - strand at 151.829 kb on + strand at 151.962 kb on - strand at 151.980 kb on + strand at 151.980 kb on + strand at 151.981 kb on - strand at 151.981 kb on - strand at 152.001 kb on + strand at 152.002 kb on - strand at 152.002 kb on - strand at 152.002 kb on - strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.018 kb on - strand at 152.022 kb on - strand at 152.040 kb on + strand at 152.040 kb on + strand at 152.040 kb on + strand at 152.040 kb on + strand at 152.041 kb on - strand at 152.041 kb on - strand at 152.044 kb on + strand at 152.045 kb on - strand at 152.045 kb on - strand at 152.298 kb on + strand, within DDA3937_RS00660 at 152.299 kb on - strand, within DDA3937_RS00660 at 152.360 kb on + strand, within DDA3937_RS00660 at 152.360 kb on + strand, within DDA3937_RS00660 at 152.367 kb on + strand, within DDA3937_RS00660 at 152.367 kb on + strand, within DDA3937_RS00660 at 152.368 kb on - strand, within DDA3937_RS00660 at 152.418 kb on + strand, within DDA3937_RS00660 at 152.418 kb on + strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.419 kb on - strand, within DDA3937_RS00660 at 152.475 kb on - strand, within DDA3937_RS00660 at 152.484 kb on + strand, within DDA3937_RS00660 at 152.485 kb on - strand, within DDA3937_RS00660 at 152.485 kb on - strand, within DDA3937_RS00660 at 152.495 kb on + strand, within DDA3937_RS00660 at 152.496 kb on - strand, within DDA3937_RS00660 at 152.544 kb on + strand, within DDA3937_RS00660 at 152.544 kb on + strand, within DDA3937_RS00660 at 152.545 kb on - strand, within DDA3937_RS00660 at 152.602 kb on - strand, within DDA3937_RS00660 at 152.626 kb on + strand, within DDA3937_RS00660 at 152.626 kb on + strand, within DDA3937_RS00660 at 152.654 kb on + strand, within DDA3937_RS00660 at 152.745 kb on + strand, within DDA3937_RS00660 at 152.745 kb on + strand, within DDA3937_RS00660 at 152.745 kb on + strand, within DDA3937_RS00660 at 152.757 kb on + strand, within DDA3937_RS00660 at 152.758 kb on - strand at 152.761 kb on - strand, within DDA3937_RS00660 at 152.907 kb on + strand, within DDA3937_RS00660 at 152.907 kb on + strand, within DDA3937_RS00660 at 152.994 kb on + strand, within DDA3937_RS00660 at 152.994 kb on + strand, within DDA3937_RS00660 at 152.994 kb on + strand, within DDA3937_RS00660 at 152.995 kb on - strand, within DDA3937_RS00660 at 152.995 kb on - strand, within DDA3937_RS00660 at 153.151 kb on + strand at 153.173 kb on + strand at 153.174 kb on - strand at 153.174 kb on - strand at 153.211 kb on + strand at 153.212 kb on - strand at 153.212 kb on - strand at 153.262 kb on - strand at 153.262 kb on - strand at 153.268 kb on - strand at 153.272 kb on + strand at 153.273 kb on - strand at 153.273 kb on - strand at 153.292 kb on - strand at 153.320 kb on - strand at 153.336 kb on + strand at 153.336 kb on + strand at 153.336 kb on + strand at 153.336 kb on + strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.337 kb on - strand at 153.358 kb on - strand at 153.389 kb on + strand, within DDA3937_RS00665 at 153.389 kb on + strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.390 kb on - strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.411 kb on + strand, within DDA3937_RS00665 at 153.412 kb on - strand, within DDA3937_RS00665 at 153.412 kb on - strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.413 kb on + strand, within DDA3937_RS00665 at 153.414 kb on - strand, within DDA3937_RS00665 at 153.414 kb on - strand, within DDA3937_RS00665 at 153.422 kb on + strand, within DDA3937_RS00665 at 153.422 kb on + strand, within DDA3937_RS00665 at 153.423 kb on - strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.426 kb on + strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.427 kb on - strand, within DDA3937_RS00665 at 153.531 kb on + strand, within DDA3937_RS00665 at 153.558 kb on + strand, within DDA3937_RS00665 at 153.559 kb on - strand, within DDA3937_RS00665 at 153.611 kb on + strand, within DDA3937_RS00665 at 153.611 kb on + strand, within DDA3937_RS00665 at 153.611 kb on + strand, within DDA3937_RS00665 at 153.612 kb on - strand, within DDA3937_RS00665 at 153.612 kb on - strand, within DDA3937_RS00665 at 153.612 kb on - strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.633 kb on + strand, within DDA3937_RS00665 at 153.634 kb on - strand, within DDA3937_RS00665 at 153.634 kb on - strand, within DDA3937_RS00665 at 153.634 kb on - strand, within DDA3937_RS00665 at 153.801 kb on + strand, within DDA3937_RS00665 at 153.951 kb on + strand, within DDA3937_RS00665 at 153.952 kb on - strand, within DDA3937_RS00665 at 153.952 kb on - strand, within DDA3937_RS00665 at 153.962 kb on + strand, within DDA3937_RS00665 at 153.969 kb on + strand, within DDA3937_RS00665 at 153.970 kb on - strand, within DDA3937_RS00665 at 153.970 kb on - strand, within DDA3937_RS00665 at 153.970 kb on - strand, within DDA3937_RS00665 at 154.107 kb on + strand at 154.107 kb on + strand at 154.108 kb on - strand at 154.108 kb on - strand at 154.108 kb on - strand at 154.108 kb on - strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.109 kb on + strand at 154.110 kb on - strand at 154.110 kb on - strand at 154.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 151,120 + -2.3 151,121 - +0.6 151,133 + -0.3 151,134 - +0.4 151,214 + +0.4 151,222 + +1.7 151,222 + +0.4 151,223 - -0.2 151,242 + +0.7 151,242 + -0.8 151,243 - -0.3 151,243 - +0.6 151,243 - -0.7 151,243 - +0.7 151,284 + +0.2 151,284 + -1.9 151,285 - DDA3937_RS00655 0.10 -0.6 151,285 - DDA3937_RS00655 0.10 +0.9 151,285 - DDA3937_RS00655 0.10 +0.5 151,428 + DDA3937_RS00655 0.43 +0.4 151,428 + DDA3937_RS00655 0.43 +0.5 151,429 - DDA3937_RS00655 0.43 -0.6 151,429 - DDA3937_RS00655 0.43 -0.3 151,429 - DDA3937_RS00655 0.43 -1.7 151,432 + DDA3937_RS00655 0.44 +0.3 151,432 + DDA3937_RS00655 0.44 +0.1 151,678 + -0.1 151,708 + +1.3 151,708 + -0.4 151,708 + +0.3 151,709 - +2.1 151,709 - -1.0 151,709 - -0.7 151,709 - -1.7 151,713 + -1.3 151,714 - +0.5 151,740 + -2.6 151,806 - -0.2 151,818 + -1.0 151,819 - +0.1 151,829 + -0.7 151,962 - +0.7 151,980 + +0.7 151,980 + -1.2 151,981 - +0.2 151,981 - -0.6 152,001 + +0.1 152,002 - -1.6 152,002 - -1.6 152,002 - -0.5 152,017 + -0.4 152,017 + +0.2 152,018 - +1.0 152,022 - -0.5 152,040 + +0.6 152,040 + -0.1 152,040 + -1.3 152,040 + -0.8 152,041 - +0.6 152,041 - -0.9 152,044 + -0.1 152,045 - +0.6 152,045 - +0.7 152,298 + DDA3937_RS00660 0.19 +0.2 152,299 - DDA3937_RS00660 0.19 -0.2 152,360 + DDA3937_RS00660 0.25 -0.7 152,360 + DDA3937_RS00660 0.25 -1.0 152,367 + DDA3937_RS00660 0.26 +0.4 152,367 + DDA3937_RS00660 0.26 +0.9 152,368 - DDA3937_RS00660 0.26 -0.1 152,418 + DDA3937_RS00660 0.30 -0.6 152,418 + DDA3937_RS00660 0.30 -0.4 152,419 - DDA3937_RS00660 0.30 +0.5 152,419 - DDA3937_RS00660 0.30 +0.7 152,419 - DDA3937_RS00660 0.30 -0.1 152,419 - DDA3937_RS00660 0.30 +0.4 152,475 - DDA3937_RS00660 0.35 -0.9 152,484 + DDA3937_RS00660 0.36 -0.1 152,485 - DDA3937_RS00660 0.36 -0.0 152,485 - DDA3937_RS00660 0.36 -0.2 152,495 + DDA3937_RS00660 0.37 -0.2 152,496 - DDA3937_RS00660 0.37 -0.0 152,544 + DDA3937_RS00660 0.42 -0.3 152,544 + DDA3937_RS00660 0.42 -1.0 152,545 - DDA3937_RS00660 0.42 +0.3 152,602 - DDA3937_RS00660 0.47 -0.5 152,626 + DDA3937_RS00660 0.49 -0.3 152,626 + DDA3937_RS00660 0.49 +1.7 152,654 + DDA3937_RS00660 0.51 +0.2 152,745 + DDA3937_RS00660 0.60 +0.3 152,745 + DDA3937_RS00660 0.60 -0.9 152,745 + DDA3937_RS00660 0.60 +1.1 152,757 + DDA3937_RS00660 0.61 -0.6 152,758 - -0.6 152,761 - DDA3937_RS00660 0.61 +1.0 152,907 + DDA3937_RS00660 0.74 +0.4 152,907 + DDA3937_RS00660 0.74 -0.3 152,994 + DDA3937_RS00660 0.82 -0.4 152,994 + DDA3937_RS00660 0.82 +0.2 152,994 + DDA3937_RS00660 0.82 +0.7 152,995 - DDA3937_RS00660 0.82 -0.3 152,995 - DDA3937_RS00660 0.82 -0.6 153,151 + +0.0 153,173 + -0.7 153,174 - -0.4 153,174 - +3.1 153,211 + -2.1 153,212 - -0.2 153,212 - -0.4 153,262 - +0.7 153,262 - -0.3 153,268 - +0.7 153,272 + -1.9 153,273 - -0.7 153,273 - -0.1 153,292 - -0.5 153,320 - -0.8 153,336 + -1.1 153,336 + -0.4 153,336 + -0.3 153,336 + -0.5 153,337 - -0.7 153,337 - +1.0 153,337 - -0.3 153,337 - -1.1 153,337 - +0.5 153,337 - -0.3 153,358 - +0.6 153,389 + DDA3937_RS00665 0.13 +0.1 153,389 + DDA3937_RS00665 0.13 -0.1 153,390 - DDA3937_RS00665 0.13 -0.5 153,390 - DDA3937_RS00665 0.13 +0.7 153,390 - DDA3937_RS00665 0.13 -0.5 153,390 - DDA3937_RS00665 0.13 +0.4 153,411 + DDA3937_RS00665 0.15 +0.4 153,411 + DDA3937_RS00665 0.15 +1.0 153,411 + DDA3937_RS00665 0.15 -0.0 153,411 + DDA3937_RS00665 0.15 +0.1 153,411 + DDA3937_RS00665 0.15 +0.1 153,411 + DDA3937_RS00665 0.15 -1.6 153,411 + DDA3937_RS00665 0.15 -0.6 153,411 + DDA3937_RS00665 0.15 +0.3 153,411 + DDA3937_RS00665 0.15 +0.4 153,412 - DDA3937_RS00665 0.15 -0.3 153,412 - DDA3937_RS00665 0.15 +0.6 153,413 + DDA3937_RS00665 0.15 -0.0 153,413 + DDA3937_RS00665 0.15 -0.8 153,413 + DDA3937_RS00665 0.15 +0.0 153,413 + DDA3937_RS00665 0.15 -0.2 153,414 - DDA3937_RS00665 0.15 -1.5 153,414 - DDA3937_RS00665 0.15 -0.5 153,422 + DDA3937_RS00665 0.16 +0.4 153,422 + DDA3937_RS00665 0.16 -0.0 153,423 - DDA3937_RS00665 0.16 -0.1 153,426 + DDA3937_RS00665 0.17 -1.1 153,426 + DDA3937_RS00665 0.17 +0.4 153,426 + DDA3937_RS00665 0.17 -0.7 153,426 + DDA3937_RS00665 0.17 +1.1 153,426 + DDA3937_RS00665 0.17 +1.1 153,426 + DDA3937_RS00665 0.17 -0.0 153,426 + DDA3937_RS00665 0.17 -0.0 153,426 + DDA3937_RS00665 0.17 -0.0 153,426 + DDA3937_RS00665 0.17 -0.0 153,427 - DDA3937_RS00665 0.17 -0.5 153,427 - DDA3937_RS00665 0.17 -3.1 153,427 - DDA3937_RS00665 0.17 -0.0 153,427 - DDA3937_RS00665 0.17 +0.7 153,427 - DDA3937_RS00665 0.17 -0.1 153,427 - DDA3937_RS00665 0.17 +0.8 153,427 - DDA3937_RS00665 0.17 -0.1 153,427 - DDA3937_RS00665 0.17 +0.1 153,427 - DDA3937_RS00665 0.17 +0.1 153,427 - DDA3937_RS00665 0.17 -0.0 153,531 + DDA3937_RS00665 0.28 -0.3 153,558 + DDA3937_RS00665 0.31 +0.2 153,559 - DDA3937_RS00665 0.31 +0.7 153,611 + DDA3937_RS00665 0.36 +0.0 153,611 + DDA3937_RS00665 0.36 -0.3 153,611 + DDA3937_RS00665 0.36 -0.0 153,612 - DDA3937_RS00665 0.37 -0.1 153,612 - DDA3937_RS00665 0.37 +0.1 153,612 - DDA3937_RS00665 0.37 +0.9 153,633 + DDA3937_RS00665 0.39 +0.4 153,633 + DDA3937_RS00665 0.39 +2.0 153,633 + DDA3937_RS00665 0.39 +0.5 153,633 + DDA3937_RS00665 0.39 -0.8 153,633 + DDA3937_RS00665 0.39 +1.1 153,633 + DDA3937_RS00665 0.39 -0.7 153,633 + DDA3937_RS00665 0.39 -0.3 153,634 - DDA3937_RS00665 0.39 +0.2 153,634 - DDA3937_RS00665 0.39 +0.4 153,634 - DDA3937_RS00665 0.39 +0.4 153,801 + DDA3937_RS00665 0.57 +0.5 153,951 + DDA3937_RS00665 0.73 -0.5 153,952 - DDA3937_RS00665 0.73 +0.1 153,952 - DDA3937_RS00665 0.73 -0.7 153,962 + DDA3937_RS00665 0.74 +0.6 153,969 + DDA3937_RS00665 0.75 -0.1 153,970 - DDA3937_RS00665 0.75 -0.4 153,970 - DDA3937_RS00665 0.75 +0.5 153,970 - DDA3937_RS00665 0.75 -0.4 154,107 + -0.0 154,107 + +0.7 154,108 - -0.7 154,108 - -0.4 154,108 - -0.4 154,108 - -0.9 154,109 + -0.1 154,109 + -0.3 154,109 + +0.4 154,109 + -0.2 154,109 + -0.6 154,109 + +0.5 154,110 - -0.3 154,110 - -0.9 154,110 - -0.3
Or see this region's nucleotide sequence