Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00425 and DDA3937_RS00430 are separated by 303 nucleotides DDA3937_RS00430 and DDA3937_RS00435 are separated by 150 nucleotides DDA3937_RS00435 and DDA3937_RS00440 are separated by 674 nucleotides
DDA3937_RS00425: DDA3937_RS00425 - YceK/YidQ family lipoprotein, at 100,071 to 100,439
_RS00425
DDA3937_RS00430: DDA3937_RS00430 - heat shock chaperone IbpA, at 100,743 to 101,156
_RS00430
DDA3937_RS00435: DDA3937_RS00435 - heat shock chaperone IbpB, at 101,307 to 101,756
_RS00435
DDA3937_RS00440: DDA3937_RS00440 - anion permease, at 102,431 to 103,843
_RS00440
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.327 kb on + strand at 100.328 kb on - strand, within DDA3937_RS00425 at 100.328 kb on - strand, within DDA3937_RS00425 at 100.364 kb on + strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.446 kb on - strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.501 kb on + strand at 100.501 kb on + strand at 100.501 kb on + strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.560 kb on - strand at 100.560 kb on - strand at 100.560 kb on - strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.629 kb on - strand at 100.629 kb on - strand at 100.629 kb on - strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.666 kb on + strand at 100.666 kb on + strand at 100.667 kb on - strand at 100.667 kb on - strand at 100.730 kb on + strand at 100.730 kb on + strand at 100.731 kb on - strand at 100.731 kb on - strand at 100.742 kb on + strand at 100.742 kb on + strand at 100.770 kb on + strand at 100.770 kb on + strand at 100.771 kb on - strand at 100.771 kb on - strand at 100.802 kb on + strand, within DDA3937_RS00430 at 100.851 kb on + strand, within DDA3937_RS00430 at 100.852 kb on - strand, within DDA3937_RS00430 at 100.852 kb on - strand, within DDA3937_RS00430 at 100.853 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 101.001 kb on + strand, within DDA3937_RS00430 at 101.154 kb on + strand at 101.154 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.201 kb on + strand at 101.201 kb on + strand at 101.201 kb on + strand at 101.202 kb on - strand at 101.202 kb on - strand at 101.202 kb on - strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.233 kb on - strand at 101.233 kb on - strand at 101.233 kb on - strand at 101.278 kb on + strand at 101.301 kb on - strand at 101.306 kb on + strand at 101.316 kb on + strand at 101.317 kb on - strand at 101.323 kb on + strand at 101.324 kb on - strand at 101.324 kb on - strand at 101.324 kb on - strand at 101.406 kb on + strand, within DDA3937_RS00435 at 101.406 kb on + strand, within DDA3937_RS00435 at 101.407 kb on - strand, within DDA3937_RS00435 at 101.429 kb on + strand, within DDA3937_RS00435 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand at 101.444 kb on + strand, within DDA3937_RS00435 at 101.444 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.595 kb on - strand, within DDA3937_RS00435 at 101.696 kb on + strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.765 kb on - strand at 101.865 kb on - strand at 101.886 kb on - strand at 101.896 kb on + strand at 102.132 kb on + strand at 102.147 kb on + strand at 102.245 kb on + strand at 102.337 kb on - strand at 102.337 kb on - strand at 102.337 kb on - strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.431 kb on - strand at 102.431 kb on - strand at 102.466 kb on + strand at 102.466 kb on + strand at 102.467 kb on - strand at 102.467 kb on - strand at 102.488 kb on - strand at 102.549 kb on + strand at 102.549 kb on + strand at 102.553 kb on + strand at 102.553 kb on + strand at 102.554 kb on - strand at 102.554 kb on - strand at 102.617 kb on - strand, within DDA3937_RS00440 at 102.617 kb on - strand, within DDA3937_RS00440
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 100,327 + -0.9 100,328 - DDA3937_RS00425 0.70 +0.5 100,328 - DDA3937_RS00425 0.70 +0.1 100,364 + DDA3937_RS00425 0.79 -0.4 100,365 - DDA3937_RS00425 0.80 -1.4 100,365 - DDA3937_RS00425 0.80 -1.4 100,365 - DDA3937_RS00425 0.80 -0.2 100,446 - -0.6 100,487 + +0.6 100,487 + -0.1 100,487 + -1.1 100,487 + -0.2 100,488 - +0.1 100,488 - -0.4 100,488 - +0.3 100,488 - -0.5 100,501 + -0.8 100,501 + -0.4 100,501 + -0.0 100,502 - +1.7 100,502 - -0.7 100,502 - -0.9 100,502 - +0.4 100,502 - +0.4 100,551 + -0.3 100,551 + +0.2 100,551 + -0.9 100,551 + +0.6 100,552 - -0.8 100,552 - -1.3 100,552 - +1.1 100,552 - +2.1 100,552 - -1.0 100,552 - +0.7 100,552 - -0.6 100,552 - -3.0 100,552 - -2.7 100,552 - -1.0 100,552 - -0.3 100,559 + +1.7 100,559 + -0.9 100,559 + -0.3 100,559 + -0.6 100,560 - -0.9 100,560 - -0.6 100,560 - +1.2 100,628 + -0.9 100,628 + +0.1 100,628 + -0.2 100,628 + -2.7 100,628 + +1.0 100,629 - -0.6 100,629 - -1.4 100,629 - +0.4 100,635 + +0.1 100,635 + -1.3 100,666 + +0.7 100,666 + -0.2 100,667 - +1.7 100,667 - -0.0 100,730 + -2.3 100,730 + +0.0 100,731 - +1.0 100,731 - -0.6 100,742 + -0.3 100,742 + -1.0 100,770 + +0.6 100,770 + +1.7 100,771 - -3.0 100,771 - -1.0 100,802 + DDA3937_RS00430 0.14 +0.7 100,851 + DDA3937_RS00430 0.26 -0.1 100,852 - DDA3937_RS00430 0.26 -1.3 100,852 - DDA3937_RS00430 0.26 +0.7 100,853 + DDA3937_RS00430 0.27 +0.1 100,995 + DDA3937_RS00430 0.61 +0.1 100,995 + DDA3937_RS00430 0.61 -0.5 100,995 + DDA3937_RS00430 0.61 +0.3 100,995 + DDA3937_RS00430 0.61 -0.8 100,995 + DDA3937_RS00430 0.61 -0.9 100,996 - DDA3937_RS00430 0.61 -1.1 100,996 - DDA3937_RS00430 0.61 -1.1 100,996 - DDA3937_RS00430 0.61 -1.0 100,996 - DDA3937_RS00430 0.61 -0.6 101,001 + DDA3937_RS00430 0.62 +0.4 101,154 + +0.7 101,154 + +0.1 101,195 + -0.0 101,195 + +1.1 101,195 + +0.3 101,195 + -1.0 101,195 + -0.1 101,196 - -0.2 101,196 - +0.9 101,196 - -0.4 101,196 - +0.2 101,196 - -0.6 101,196 - -1.6 101,201 + +0.4 101,201 + +1.7 101,201 + -0.3 101,202 - +0.3 101,202 - -0.2 101,202 - -1.3 101,232 + -0.3 101,232 + -0.9 101,232 + +0.6 101,232 + -1.7 101,232 + +0.5 101,233 - +0.5 101,233 - -1.0 101,233 - -0.5 101,278 + -0.3 101,301 - -0.5 101,306 + -1.0 101,316 + +0.4 101,317 - +0.1 101,323 + -0.0 101,324 - +0.4 101,324 - +0.7 101,324 - +0.8 101,406 + DDA3937_RS00435 0.22 +0.2 101,406 + DDA3937_RS00435 0.22 -0.8 101,407 - DDA3937_RS00435 0.22 -0.3 101,429 + DDA3937_RS00435 0.27 -1.3 101,441 + DDA3937_RS00435 0.30 +0.7 101,441 + DDA3937_RS00435 0.30 -0.3 101,442 - DDA3937_RS00435 0.30 -1.4 101,442 - DDA3937_RS00435 0.30 -0.1 101,442 - -1.6 101,444 + DDA3937_RS00435 0.30 -0.4 101,444 + DDA3937_RS00435 0.30 -0.3 101,550 + DDA3937_RS00435 0.54 -0.0 101,550 + DDA3937_RS00435 0.54 -0.4 101,550 + DDA3937_RS00435 0.54 +0.1 101,551 - DDA3937_RS00435 0.54 -0.3 101,551 - DDA3937_RS00435 0.54 +0.4 101,595 - DDA3937_RS00435 0.64 -0.8 101,696 + DDA3937_RS00435 0.86 -3.0 101,697 - DDA3937_RS00435 0.87 +0.4 101,697 - DDA3937_RS00435 0.87 -0.6 101,765 - -1.2 101,865 - +0.0 101,886 - +0.7 101,896 + +1.5 102,132 + +0.5 102,147 + +1.0 102,245 + +0.7 102,337 - +1.3 102,337 - -0.4 102,337 - -0.6 102,430 + -0.5 102,430 + +0.7 102,430 + +0.6 102,430 + -0.1 102,431 - +0.2 102,431 - -0.1 102,466 + +0.3 102,466 + +0.6 102,467 - -0.7 102,467 - -0.7 102,488 - -0.8 102,549 + -2.0 102,549 + -0.4 102,553 + -0.1 102,553 + +0.7 102,554 - +0.1 102,554 - -1.6 102,617 - DDA3937_RS00440 0.13 -0.5 102,617 - DDA3937_RS00440 0.13 -2.0
Or see this region's nucleotide sequence