Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00420 and DDA3937_RS00425 overlap by 7 nucleotides DDA3937_RS00425 and DDA3937_RS00430 are separated by 303 nucleotides DDA3937_RS00430 and DDA3937_RS00435 are separated by 150 nucleotides
DDA3937_RS00420: DDA3937_RS00420 - LacI family DNA-binding transcriptional regulator, at 99,073 to 100,077
_RS00420
DDA3937_RS00425: DDA3937_RS00425 - YceK/YidQ family lipoprotein, at 100,071 to 100,439
_RS00425
DDA3937_RS00430: DDA3937_RS00430 - heat shock chaperone IbpA, at 100,743 to 101,156
_RS00430
DDA3937_RS00435: DDA3937_RS00435 - heat shock chaperone IbpB, at 101,307 to 101,756
_RS00435
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.840 kb on - strand, within DDA3937_RS00420 at 99.840 kb on - strand, within DDA3937_RS00420 at 99.865 kb on + strand, within DDA3937_RS00420 at 99.865 kb on + strand, within DDA3937_RS00420 at 99.866 kb on - strand, within DDA3937_RS00420 at 99.867 kb on + strand, within DDA3937_RS00420 at 99.868 kb on - strand, within DDA3937_RS00420 at 99.930 kb on + strand, within DDA3937_RS00420 at 100.086 kb on - strand at 100.102 kb on - strand at 100.172 kb on + strand, within DDA3937_RS00425 at 100.172 kb on + strand, within DDA3937_RS00425 at 100.172 kb on + strand, within DDA3937_RS00425 at 100.172 kb on + strand, within DDA3937_RS00425 at 100.173 kb on - strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.201 kb on + strand, within DDA3937_RS00425 at 100.202 kb on - strand, within DDA3937_RS00425 at 100.202 kb on - strand, within DDA3937_RS00425 at 100.202 kb on - strand, within DDA3937_RS00425 at 100.202 kb on - strand, within DDA3937_RS00425 at 100.202 kb on - strand, within DDA3937_RS00425 at 100.202 kb on - strand, within DDA3937_RS00425 at 100.207 kb on + strand, within DDA3937_RS00425 at 100.208 kb on - strand, within DDA3937_RS00425 at 100.208 kb on - strand, within DDA3937_RS00425 at 100.208 kb on - strand, within DDA3937_RS00425 at 100.296 kb on + strand, within DDA3937_RS00425 at 100.327 kb on + strand at 100.328 kb on - strand, within DDA3937_RS00425 at 100.328 kb on - strand, within DDA3937_RS00425 at 100.364 kb on + strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.446 kb on - strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.501 kb on + strand at 100.501 kb on + strand at 100.501 kb on + strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.560 kb on - strand at 100.560 kb on - strand at 100.560 kb on - strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.629 kb on - strand at 100.629 kb on - strand at 100.629 kb on - strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.666 kb on + strand at 100.666 kb on + strand at 100.667 kb on - strand at 100.667 kb on - strand at 100.730 kb on + strand at 100.730 kb on + strand at 100.731 kb on - strand at 100.731 kb on - strand at 100.742 kb on + strand at 100.742 kb on + strand at 100.770 kb on + strand at 100.770 kb on + strand at 100.771 kb on - strand at 100.771 kb on - strand at 100.802 kb on + strand, within DDA3937_RS00430 at 100.851 kb on + strand, within DDA3937_RS00430 at 100.852 kb on - strand, within DDA3937_RS00430 at 100.852 kb on - strand, within DDA3937_RS00430 at 100.853 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 101.001 kb on + strand, within DDA3937_RS00430 at 101.154 kb on + strand at 101.154 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.201 kb on + strand at 101.201 kb on + strand at 101.201 kb on + strand at 101.202 kb on - strand at 101.202 kb on - strand at 101.202 kb on - strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.233 kb on - strand at 101.233 kb on - strand at 101.233 kb on - strand at 101.278 kb on + strand at 101.301 kb on - strand at 101.306 kb on + strand at 101.316 kb on + strand at 101.317 kb on - strand at 101.323 kb on + strand at 101.324 kb on - strand at 101.324 kb on - strand at 101.324 kb on - strand at 101.406 kb on + strand, within DDA3937_RS00435 at 101.406 kb on + strand, within DDA3937_RS00435 at 101.407 kb on - strand, within DDA3937_RS00435 at 101.429 kb on + strand, within DDA3937_RS00435 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand at 101.444 kb on + strand, within DDA3937_RS00435 at 101.444 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.595 kb on - strand, within DDA3937_RS00435 at 101.696 kb on + strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.765 kb on - strand at 101.865 kb on - strand at 101.886 kb on - strand at 101.896 kb on + strand at 102.132 kb on + strand at 102.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 99,839 + DDA3937_RS00420 0.76 +0.7 99,839 + DDA3937_RS00420 0.76 -0.3 99,839 + DDA3937_RS00420 0.76 -0.9 99,839 + DDA3937_RS00420 0.76 -0.5 99,839 + DDA3937_RS00420 0.76 +2.5 99,840 - DDA3937_RS00420 0.76 +0.8 99,840 - DDA3937_RS00420 0.76 -0.2 99,865 + DDA3937_RS00420 0.79 -0.4 99,865 + DDA3937_RS00420 0.79 -0.0 99,866 - DDA3937_RS00420 0.79 +1.1 99,867 + DDA3937_RS00420 0.79 +0.8 99,868 - DDA3937_RS00420 0.79 +0.1 99,930 + DDA3937_RS00420 0.85 +0.9 100,086 - -0.5 100,102 - -1.6 100,172 + DDA3937_RS00425 0.27 -0.7 100,172 + DDA3937_RS00425 0.27 -0.6 100,172 + DDA3937_RS00425 0.27 -0.1 100,172 + DDA3937_RS00425 0.27 +0.4 100,173 - DDA3937_RS00425 0.28 -0.0 100,201 + DDA3937_RS00425 0.35 -0.3 100,201 + DDA3937_RS00425 0.35 -1.0 100,201 + DDA3937_RS00425 0.35 -0.4 100,201 + DDA3937_RS00425 0.35 +1.1 100,201 + DDA3937_RS00425 0.35 -1.9 100,201 + DDA3937_RS00425 0.35 -0.4 100,201 + DDA3937_RS00425 0.35 +0.3 100,201 + DDA3937_RS00425 0.35 -0.0 100,201 + DDA3937_RS00425 0.35 -1.4 100,202 - DDA3937_RS00425 0.36 -0.5 100,202 - DDA3937_RS00425 0.36 -2.3 100,202 - DDA3937_RS00425 0.36 -1.9 100,202 - DDA3937_RS00425 0.36 -0.0 100,202 - DDA3937_RS00425 0.36 -0.6 100,202 - DDA3937_RS00425 0.36 -0.8 100,207 + DDA3937_RS00425 0.37 -0.0 100,208 - DDA3937_RS00425 0.37 +0.7 100,208 - DDA3937_RS00425 0.37 -0.0 100,208 - DDA3937_RS00425 0.37 -0.3 100,296 + DDA3937_RS00425 0.61 -0.1 100,327 + -0.9 100,328 - DDA3937_RS00425 0.70 +0.5 100,328 - DDA3937_RS00425 0.70 +0.1 100,364 + DDA3937_RS00425 0.79 -0.4 100,365 - DDA3937_RS00425 0.80 -1.4 100,365 - DDA3937_RS00425 0.80 -1.4 100,365 - DDA3937_RS00425 0.80 -0.2 100,446 - -0.6 100,487 + +0.6 100,487 + -0.1 100,487 + -1.1 100,487 + -0.2 100,488 - +0.1 100,488 - -0.4 100,488 - +0.3 100,488 - -0.5 100,501 + -0.8 100,501 + -0.4 100,501 + -0.0 100,502 - +1.7 100,502 - -0.7 100,502 - -0.9 100,502 - +0.4 100,502 - +0.4 100,551 + -0.3 100,551 + +0.2 100,551 + -0.9 100,551 + +0.6 100,552 - -0.8 100,552 - -1.3 100,552 - +1.1 100,552 - +2.1 100,552 - -1.0 100,552 - +0.7 100,552 - -0.6 100,552 - -3.0 100,552 - -2.7 100,552 - -1.0 100,552 - -0.3 100,559 + +1.7 100,559 + -0.9 100,559 + -0.3 100,559 + -0.6 100,560 - -0.9 100,560 - -0.6 100,560 - +1.2 100,628 + -0.9 100,628 + +0.1 100,628 + -0.2 100,628 + -2.7 100,628 + +1.0 100,629 - -0.6 100,629 - -1.4 100,629 - +0.4 100,635 + +0.1 100,635 + -1.3 100,666 + +0.7 100,666 + -0.2 100,667 - +1.7 100,667 - -0.0 100,730 + -2.3 100,730 + +0.0 100,731 - +1.0 100,731 - -0.6 100,742 + -0.3 100,742 + -1.0 100,770 + +0.6 100,770 + +1.7 100,771 - -3.0 100,771 - -1.0 100,802 + DDA3937_RS00430 0.14 +0.7 100,851 + DDA3937_RS00430 0.26 -0.1 100,852 - DDA3937_RS00430 0.26 -1.3 100,852 - DDA3937_RS00430 0.26 +0.7 100,853 + DDA3937_RS00430 0.27 +0.1 100,995 + DDA3937_RS00430 0.61 +0.1 100,995 + DDA3937_RS00430 0.61 -0.5 100,995 + DDA3937_RS00430 0.61 +0.3 100,995 + DDA3937_RS00430 0.61 -0.8 100,995 + DDA3937_RS00430 0.61 -0.9 100,996 - DDA3937_RS00430 0.61 -1.1 100,996 - DDA3937_RS00430 0.61 -1.1 100,996 - DDA3937_RS00430 0.61 -1.0 100,996 - DDA3937_RS00430 0.61 -0.6 101,001 + DDA3937_RS00430 0.62 +0.4 101,154 + +0.7 101,154 + +0.1 101,195 + -0.0 101,195 + +1.1 101,195 + +0.3 101,195 + -1.0 101,195 + -0.1 101,196 - -0.2 101,196 - +0.9 101,196 - -0.4 101,196 - +0.2 101,196 - -0.6 101,196 - -1.6 101,201 + +0.4 101,201 + +1.7 101,201 + -0.3 101,202 - +0.3 101,202 - -0.2 101,202 - -1.3 101,232 + -0.3 101,232 + -0.9 101,232 + +0.6 101,232 + -1.7 101,232 + +0.5 101,233 - +0.5 101,233 - -1.0 101,233 - -0.5 101,278 + -0.3 101,301 - -0.5 101,306 + -1.0 101,316 + +0.4 101,317 - +0.1 101,323 + -0.0 101,324 - +0.4 101,324 - +0.7 101,324 - +0.8 101,406 + DDA3937_RS00435 0.22 +0.2 101,406 + DDA3937_RS00435 0.22 -0.8 101,407 - DDA3937_RS00435 0.22 -0.3 101,429 + DDA3937_RS00435 0.27 -1.3 101,441 + DDA3937_RS00435 0.30 +0.7 101,441 + DDA3937_RS00435 0.30 -0.3 101,442 - DDA3937_RS00435 0.30 -1.4 101,442 - DDA3937_RS00435 0.30 -0.1 101,442 - -1.6 101,444 + DDA3937_RS00435 0.30 -0.4 101,444 + DDA3937_RS00435 0.30 -0.3 101,550 + DDA3937_RS00435 0.54 -0.0 101,550 + DDA3937_RS00435 0.54 -0.4 101,550 + DDA3937_RS00435 0.54 +0.1 101,551 - DDA3937_RS00435 0.54 -0.3 101,551 - DDA3937_RS00435 0.54 +0.4 101,595 - DDA3937_RS00435 0.64 -0.8 101,696 + DDA3937_RS00435 0.86 -3.0 101,697 - DDA3937_RS00435 0.87 +0.4 101,697 - DDA3937_RS00435 0.87 -0.6 101,765 - -1.2 101,865 - +0.0 101,886 - +0.7 101,896 + +1.5 102,132 + +0.5 102,147 + +1.0
Or see this region's nucleotide sequence