Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00200 and DDA3937_RS00205 are separated by 153 nucleotides DDA3937_RS00205 and DDA3937_RS00210 are separated by 430 nucleotides DDA3937_RS00210 and DDA3937_RS00215 are separated by 101 nucleotides DDA3937_RS00215 and DDA3937_RS00220 are separated by 4 nucleotides
DDA3937_RS00200: DDA3937_RS00200 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 48,677 to 50,359
_RS00200
DDA3937_RS00205: DDA3937_RS00205 - tRNA-Pro, at 50,513 to 50,589
_RS00205
DDA3937_RS00210: DDA3937_RS00210 - tetratricopeptide repeat protein, at 51,020 to 51,646
_RS00210
DDA3937_RS00215: DDA3937_RS00215 - SDR family oxidoreductase, at 51,748 to 52,542
_RS00215
DDA3937_RS00220: DDA3937_RS00220 - long-chain-fatty-acid--CoA ligase, at 52,547 to 53,185
_RS00220
Position (kb) 51
52 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 50.063 kb on + strand, within DDA3937_RS00200 at 50.063 kb on + strand, within DDA3937_RS00200 at 50.063 kb on + strand, within DDA3937_RS00200 at 50.064 kb on - strand, within DDA3937_RS00200 at 50.064 kb on - strand, within DDA3937_RS00200 at 50.064 kb on - strand, within DDA3937_RS00200 at 50.064 kb on - strand, within DDA3937_RS00200 at 50.064 kb on - strand at 50.099 kb on + strand, within DDA3937_RS00200 at 50.099 kb on + strand, within DDA3937_RS00200 at 50.099 kb on + strand, within DDA3937_RS00200 at 50.099 kb on + strand, within DDA3937_RS00200 at 50.099 kb on + strand, within DDA3937_RS00200 at 50.100 kb on - strand, within DDA3937_RS00200 at 50.100 kb on - strand, within DDA3937_RS00200 at 50.158 kb on + strand, within DDA3937_RS00200 at 50.158 kb on + strand, within DDA3937_RS00200 at 50.180 kb on + strand, within DDA3937_RS00200 at 50.180 kb on + strand, within DDA3937_RS00200 at 50.180 kb on + strand, within DDA3937_RS00200 at 50.180 kb on + strand, within DDA3937_RS00200 at 50.181 kb on - strand at 50.181 kb on - strand, within DDA3937_RS00200 at 50.181 kb on - strand, within DDA3937_RS00200 at 50.181 kb on - strand, within DDA3937_RS00200 at 50.181 kb on - strand, within DDA3937_RS00200 at 50.198 kb on - strand at 50.296 kb on + strand at 50.296 kb on + strand at 50.296 kb on + strand at 50.296 kb on + strand at 50.296 kb on + strand at 50.296 kb on + strand at 50.296 kb on + strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.297 kb on - strand at 50.329 kb on + strand at 50.341 kb on + strand at 50.341 kb on + strand at 50.373 kb on + strand at 50.373 kb on + strand at 50.374 kb on - strand at 50.374 kb on - strand at 50.374 kb on - strand at 50.479 kb on + strand at 50.479 kb on + strand at 50.479 kb on + strand at 50.479 kb on + strand at 50.480 kb on - strand at 50.480 kb on - strand at 50.498 kb on + strand at 50.499 kb on - strand at 50.499 kb on - strand at 50.741 kb on + strand at 50.742 kb on - strand at 50.913 kb on + strand at 50.926 kb on - strand at 50.930 kb on + strand at 50.930 kb on + strand at 50.931 kb on - strand at 51.024 kb on + strand at 51.024 kb on + strand at 51.024 kb on + strand at 51.025 kb on - strand at 51.025 kb on - strand at 51.123 kb on + strand, within DDA3937_RS00210 at 51.124 kb on - strand, within DDA3937_RS00210 at 51.124 kb on - strand, within DDA3937_RS00210 at 51.124 kb on - strand, within DDA3937_RS00210 at 51.124 kb on - strand, within DDA3937_RS00210 at 51.124 kb on - strand, within DDA3937_RS00210 at 51.124 kb on - strand, within DDA3937_RS00210 at 51.190 kb on + strand, within DDA3937_RS00210 at 51.225 kb on + strand, within DDA3937_RS00210 at 51.226 kb on - strand, within DDA3937_RS00210 at 51.279 kb on + strand, within DDA3937_RS00210 at 51.279 kb on + strand, within DDA3937_RS00210 at 51.279 kb on + strand, within DDA3937_RS00210 at 51.282 kb on + strand, within DDA3937_RS00210 at 51.282 kb on + strand at 51.282 kb on + strand, within DDA3937_RS00210 at 51.282 kb on + strand, within DDA3937_RS00210 at 51.282 kb on + strand, within DDA3937_RS00210 at 51.282 kb on + strand, within DDA3937_RS00210 at 51.282 kb on + strand, within DDA3937_RS00210 at 51.283 kb on - strand, within DDA3937_RS00210 at 51.283 kb on - strand, within DDA3937_RS00210 at 51.283 kb on - strand, within DDA3937_RS00210 at 51.283 kb on - strand, within DDA3937_RS00210 at 51.303 kb on + strand, within DDA3937_RS00210 at 51.304 kb on - strand, within DDA3937_RS00210 at 51.304 kb on - strand, within DDA3937_RS00210 at 51.304 kb on - strand, within DDA3937_RS00210 at 51.304 kb on - strand, within DDA3937_RS00210 at 51.355 kb on + strand, within DDA3937_RS00210 at 51.356 kb on - strand, within DDA3937_RS00210 at 51.356 kb on - strand, within DDA3937_RS00210 at 51.356 kb on - strand, within DDA3937_RS00210 at 51.537 kb on + strand, within DDA3937_RS00210 at 51.538 kb on - strand, within DDA3937_RS00210 at 51.578 kb on - strand, within DDA3937_RS00210 at 51.578 kb on - strand, within DDA3937_RS00210 at 51.578 kb on - strand, within DDA3937_RS00210 at 51.600 kb on - strand at 51.623 kb on + strand at 51.623 kb on + strand at 51.623 kb on + strand at 51.623 kb on + strand at 51.623 kb on + strand at 51.624 kb on - strand at 51.658 kb on + strand at 51.658 kb on + strand at 51.659 kb on - strand at 51.659 kb on - strand at 51.659 kb on - strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.664 kb on + strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.665 kb on - strand at 51.666 kb on + strand at 51.667 kb on - strand at 51.667 kb on - strand at 51.667 kb on - strand at 51.667 kb on - strand at 51.667 kb on - strand at 51.676 kb on + strand at 51.676 kb on + strand at 51.676 kb on + strand at 51.676 kb on + strand at 51.676 kb on + strand at 51.677 kb on - strand at 51.677 kb on - strand at 51.677 kb on - strand at 51.677 kb on - strand at 51.682 kb on + strand at 51.682 kb on + strand at 51.682 kb on + strand at 51.682 kb on + strand at 51.682 kb on + strand at 51.683 kb on - strand at 51.683 kb on - strand at 51.713 kb on - strand at 51.770 kb on + strand at 51.771 kb on - strand at 51.781 kb on - strand at 51.834 kb on + strand, within DDA3937_RS00215 at 51.835 kb on - strand, within DDA3937_RS00215 at 51.835 kb on - strand, within DDA3937_RS00215 at 51.835 kb on - strand, within DDA3937_RS00215 at 51.847 kb on + strand, within DDA3937_RS00215 at 51.905 kb on - strand, within DDA3937_RS00215 at 51.941 kb on + strand, within DDA3937_RS00215 at 52.018 kb on + strand, within DDA3937_RS00215 at 52.018 kb on + strand, within DDA3937_RS00215 at 52.018 kb on + strand, within DDA3937_RS00215 at 52.018 kb on + strand, within DDA3937_RS00215 at 52.019 kb on - strand, within DDA3937_RS00215 at 52.023 kb on + strand, within DDA3937_RS00215 at 52.094 kb on + strand, within DDA3937_RS00215 at 52.095 kb on - strand, within DDA3937_RS00215 at 52.104 kb on - strand, within DDA3937_RS00215 at 52.201 kb on + strand, within DDA3937_RS00215 at 52.202 kb on - strand, within DDA3937_RS00215 at 52.279 kb on + strand, within DDA3937_RS00215 at 52.279 kb on + strand at 52.279 kb on + strand, within DDA3937_RS00215 at 52.279 kb on + strand, within DDA3937_RS00215 at 52.279 kb on + strand, within DDA3937_RS00215 at 52.279 kb on + strand, within DDA3937_RS00215 at 52.280 kb on - strand, within DDA3937_RS00215 at 52.280 kb on - strand, within DDA3937_RS00215 at 52.280 kb on - strand, within DDA3937_RS00215 at 52.280 kb on - strand, within DDA3937_RS00215 at 52.280 kb on - strand, within DDA3937_RS00215 at 52.280 kb on - strand, within DDA3937_RS00215 at 52.280 kb on - strand, within DDA3937_RS00215 at 52.287 kb on + strand, within DDA3937_RS00215 at 52.374 kb on + strand, within DDA3937_RS00215 at 52.374 kb on + strand, within DDA3937_RS00215 at 52.375 kb on - strand at 52.375 kb on - strand, within DDA3937_RS00215 at 52.375 kb on - strand, within DDA3937_RS00215 at 52.408 kb on + strand, within DDA3937_RS00215 at 52.409 kb on - strand, within DDA3937_RS00215 at 52.445 kb on + strand, within DDA3937_RS00215 at 52.445 kb on + strand, within DDA3937_RS00215 at 52.446 kb on - strand, within DDA3937_RS00215 at 52.446 kb on - strand, within DDA3937_RS00215 at 52.521 kb on + strand at 52.521 kb on + strand at 52.521 kb on + strand at 52.548 kb on + strand at 52.549 kb on - strand at 52.581 kb on + strand at 52.581 kb on + strand at 52.582 kb on - strand at 52.590 kb on + strand at 52.612 kb on + strand, within DDA3937_RS00220 at 52.612 kb on + strand, within DDA3937_RS00220 at 52.613 kb on - strand, within DDA3937_RS00220
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 50,063 + DDA3937_RS00200 0.82 -1.7 50,063 + DDA3937_RS00200 0.82 +1.3 50,063 + DDA3937_RS00200 0.82 +0.3 50,064 - DDA3937_RS00200 0.82 -0.4 50,064 - DDA3937_RS00200 0.82 -0.9 50,064 - DDA3937_RS00200 0.82 -0.2 50,064 - DDA3937_RS00200 0.82 -1.0 50,064 - -1.3 50,099 + DDA3937_RS00200 0.84 -0.1 50,099 + DDA3937_RS00200 0.84 +0.7 50,099 + DDA3937_RS00200 0.84 -1.0 50,099 + DDA3937_RS00200 0.84 -0.4 50,099 + DDA3937_RS00200 0.84 +0.7 50,100 - DDA3937_RS00200 0.85 -0.7 50,100 - DDA3937_RS00200 0.85 -1.0 50,158 + DDA3937_RS00200 0.88 +0.7 50,158 + DDA3937_RS00200 0.88 -1.0 50,180 + DDA3937_RS00200 0.89 +0.9 50,180 + DDA3937_RS00200 0.89 -0.3 50,180 + DDA3937_RS00200 0.89 -0.3 50,180 + DDA3937_RS00200 0.89 -0.4 50,181 - -1.3 50,181 - DDA3937_RS00200 0.89 -0.8 50,181 - DDA3937_RS00200 0.89 -0.3 50,181 - DDA3937_RS00200 0.89 -0.7 50,181 - DDA3937_RS00200 0.89 -0.9 50,198 - +1.1 50,296 + +1.3 50,296 + -0.0 50,296 + -0.1 50,296 + -0.0 50,296 + +0.7 50,296 + -0.6 50,296 + +0.8 50,297 - -1.5 50,297 - -1.1 50,297 - +0.7 50,297 - +0.1 50,297 - +0.1 50,297 - -0.2 50,297 - -0.6 50,297 - -0.0 50,297 - -0.3 50,297 - -0.9 50,297 - -0.2 50,329 + -0.4 50,341 + +0.7 50,341 + +0.3 50,373 + -0.4 50,373 + +0.1 50,374 - -0.6 50,374 - +3.1 50,374 - +1.3 50,479 + -0.6 50,479 + +1.1 50,479 + -1.3 50,479 + +0.6 50,480 - -0.5 50,480 - -0.3 50,498 + -0.0 50,499 - -0.5 50,499 - -0.3 50,741 + -0.4 50,742 - -2.7 50,913 + -1.1 50,926 - -1.1 50,930 + +0.6 50,930 + +0.3 50,931 - +1.1 51,024 + -0.4 51,024 + -0.1 51,024 + -0.2 51,025 - +0.7 51,025 - -0.9 51,123 + DDA3937_RS00210 0.16 -0.9 51,124 - DDA3937_RS00210 0.17 +0.4 51,124 - DDA3937_RS00210 0.17 +0.3 51,124 - DDA3937_RS00210 0.17 -2.0 51,124 - DDA3937_RS00210 0.17 -0.1 51,124 - DDA3937_RS00210 0.17 -1.7 51,124 - DDA3937_RS00210 0.17 -1.1 51,190 + DDA3937_RS00210 0.27 +0.4 51,225 + DDA3937_RS00210 0.33 -0.3 51,226 - DDA3937_RS00210 0.33 +0.5 51,279 + DDA3937_RS00210 0.41 -0.5 51,279 + DDA3937_RS00210 0.41 -1.4 51,279 + DDA3937_RS00210 0.41 +0.1 51,282 + DDA3937_RS00210 0.42 -0.8 51,282 + -1.3 51,282 + DDA3937_RS00210 0.42 -0.3 51,282 + DDA3937_RS00210 0.42 -0.5 51,282 + DDA3937_RS00210 0.42 -0.3 51,282 + DDA3937_RS00210 0.42 +0.2 51,282 + DDA3937_RS00210 0.42 -0.5 51,283 - DDA3937_RS00210 0.42 +0.4 51,283 - DDA3937_RS00210 0.42 -0.1 51,283 - DDA3937_RS00210 0.42 -0.7 51,283 - DDA3937_RS00210 0.42 +0.9 51,303 + DDA3937_RS00210 0.45 +0.2 51,304 - DDA3937_RS00210 0.45 -1.3 51,304 - DDA3937_RS00210 0.45 -0.3 51,304 - DDA3937_RS00210 0.45 +0.1 51,304 - DDA3937_RS00210 0.45 +0.1 51,355 + DDA3937_RS00210 0.53 +0.7 51,356 - DDA3937_RS00210 0.54 -1.2 51,356 - DDA3937_RS00210 0.54 -1.1 51,356 - DDA3937_RS00210 0.54 -2.0 51,537 + DDA3937_RS00210 0.82 -0.0 51,538 - DDA3937_RS00210 0.83 +1.0 51,578 - DDA3937_RS00210 0.89 -0.3 51,578 - DDA3937_RS00210 0.89 -0.9 51,578 - DDA3937_RS00210 0.89 +0.3 51,600 - -0.6 51,623 + +0.4 51,623 + -0.0 51,623 + -0.3 51,623 + +0.5 51,623 + -0.6 51,624 - +0.5 51,658 + +1.1 51,658 + -0.9 51,659 - +0.3 51,659 - +3.2 51,659 - +0.3 51,664 + +0.7 51,664 + -0.1 51,664 + -0.1 51,664 + -0.3 51,664 + +1.3 51,664 + -0.4 51,664 + -0.0 51,664 + -0.0 51,664 + -2.1 51,664 + -1.1 51,664 + +0.7 51,664 + -0.4 51,664 + +0.1 51,664 + +0.7 51,664 + -1.0 51,664 + -0.4 51,664 + -1.0 51,664 + -0.6 51,665 - -0.3 51,665 - -0.4 51,665 - -0.8 51,665 - -0.9 51,665 - -0.5 51,665 - -0.2 51,665 - +0.7 51,665 - -2.3 51,665 - +1.0 51,665 - -0.2 51,665 - -0.9 51,665 - +0.1 51,665 - -1.6 51,665 - -0.1 51,665 - -0.5 51,665 - -0.1 51,665 - +1.0 51,665 - +0.4 51,665 - -0.5 51,665 - +0.6 51,665 - +0.1 51,665 - -0.3 51,665 - +0.2 51,665 - -0.9 51,666 + +0.2 51,667 - +0.3 51,667 - -0.3 51,667 - -2.6 51,667 - -0.7 51,667 - -0.1 51,676 + -0.6 51,676 + -0.2 51,676 + -0.2 51,676 + -0.4 51,676 + +0.1 51,677 - +0.5 51,677 - -0.1 51,677 - +0.4 51,677 - -0.9 51,682 + +0.5 51,682 + -0.1 51,682 + -0.1 51,682 + +0.4 51,682 + +0.5 51,683 - +1.1 51,683 - -0.1 51,713 - -0.6 51,770 + +0.5 51,771 - +1.3 51,781 - -0.7 51,834 + DDA3937_RS00215 0.11 -0.3 51,835 - DDA3937_RS00215 0.11 -1.6 51,835 - DDA3937_RS00215 0.11 -0.1 51,835 - DDA3937_RS00215 0.11 +0.1 51,847 + DDA3937_RS00215 0.12 -0.3 51,905 - DDA3937_RS00215 0.20 +0.7 51,941 + DDA3937_RS00215 0.24 +0.2 52,018 + DDA3937_RS00215 0.34 -0.4 52,018 + DDA3937_RS00215 0.34 +0.2 52,018 + DDA3937_RS00215 0.34 -0.3 52,018 + DDA3937_RS00215 0.34 +1.0 52,019 - DDA3937_RS00215 0.34 +0.3 52,023 + DDA3937_RS00215 0.35 -0.4 52,094 + DDA3937_RS00215 0.44 +0.3 52,095 - DDA3937_RS00215 0.44 -0.0 52,104 - DDA3937_RS00215 0.45 -0.5 52,201 + DDA3937_RS00215 0.57 -1.3 52,202 - DDA3937_RS00215 0.57 +0.5 52,279 + DDA3937_RS00215 0.67 -0.3 52,279 + -0.9 52,279 + DDA3937_RS00215 0.67 -0.9 52,279 + DDA3937_RS00215 0.67 +0.8 52,279 + DDA3937_RS00215 0.67 -1.3 52,279 + DDA3937_RS00215 0.67 +0.1 52,280 - DDA3937_RS00215 0.67 -0.1 52,280 - DDA3937_RS00215 0.67 -0.4 52,280 - DDA3937_RS00215 0.67 -0.9 52,280 - DDA3937_RS00215 0.67 +1.3 52,280 - DDA3937_RS00215 0.67 -1.2 52,280 - DDA3937_RS00215 0.67 +0.7 52,280 - DDA3937_RS00215 0.67 +0.2 52,287 + DDA3937_RS00215 0.68 -0.7 52,374 + DDA3937_RS00215 0.79 +0.8 52,374 + DDA3937_RS00215 0.79 +1.7 52,375 - +0.7 52,375 - DDA3937_RS00215 0.79 +1.5 52,375 - DDA3937_RS00215 0.79 +0.6 52,408 + DDA3937_RS00215 0.83 +0.1 52,409 - DDA3937_RS00215 0.83 +0.7 52,445 + DDA3937_RS00215 0.88 +0.9 52,445 + DDA3937_RS00215 0.88 -0.5 52,446 - DDA3937_RS00215 0.88 +0.1 52,446 - DDA3937_RS00215 0.88 -0.1 52,521 + -1.9 52,521 + +1.6 52,521 + -0.2 52,548 + -0.4 52,549 - -1.8 52,581 + +0.3 52,581 + -0.0 52,582 - +0.3 52,590 + -1.0 52,612 + DDA3937_RS00220 0.10 +0.3 52,612 + DDA3937_RS00220 0.10 +0.4 52,613 - DDA3937_RS00220 0.10 -1.9
Or see this region's nucleotide sequence