Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00120 and DDA3937_RS22930 are separated by 74 nucleotides DDA3937_RS22930 and DDA3937_RS00125 are separated by 146 nucleotides DDA3937_RS00125 and DDA3937_RS00130 are separated by 8 nucleotides
DDA3937_RS00120: DDA3937_RS00120 - oxygen-independent coproporphyrinogen III oxidase, at 26,673 to 28,046
_RS00120
DDA3937_RS22930: DDA3937_RS22930 - YshB family small membrane protein, at 28,121 to 28,243
_RS22930
DDA3937_RS00125: DDA3937_RS00125 - nitrogen regulation protein NR(I), at 28,390 to 29,802
_RS00125
DDA3937_RS00130: DDA3937_RS00130 - nitrogen regulation protein NR(II), at 29,811 to 30,860
_RS00130
Position (kb) 28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 27.396 kb on + strand, within DDA3937_RS00120 at 27.517 kb on - strand, within DDA3937_RS00120 at 27.610 kb on - strand, within DDA3937_RS00120 at 27.610 kb on - strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.662 kb on + strand, within DDA3937_RS00120 at 27.662 kb on + strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.678 kb on + strand, within DDA3937_RS00120 at 27.679 kb on - strand, within DDA3937_RS00120 at 27.679 kb on - strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.846 kb on + strand, within DDA3937_RS00120 at 27.846 kb on + strand, within DDA3937_RS00120 at 27.868 kb on - strand, within DDA3937_RS00120 at 27.923 kb on + strand at 27.923 kb on + strand at 27.977 kb on + strand at 27.977 kb on + strand at 27.978 kb on - strand at 27.978 kb on - strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.040 kb on + strand at 28.040 kb on + strand at 28.062 kb on + strand at 28.062 kb on + strand at 28.107 kb on + strand at 28.107 kb on + strand at 28.107 kb on + strand at 28.108 kb on - strand at 28.122 kb on + strand at 28.122 kb on + strand at 28.123 kb on - strand at 28.123 kb on - strand at 28.274 kb on + strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.295 kb on - strand at 28.300 kb on - strand at 28.306 kb on + strand at 28.306 kb on + strand at 28.307 kb on - strand at 28.307 kb on - strand at 28.307 kb on - strand at 28.320 kb on + strand at 28.320 kb on + strand at 28.320 kb on + strand at 28.321 kb on - strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.326 kb on - strand at 28.326 kb on - strand at 28.326 kb on - strand at 28.327 kb on + strand at 28.327 kb on + strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.372 kb on + strand at 28.829 kb on + strand, within DDA3937_RS00125 at 29.438 kb on + strand, within DDA3937_RS00125 at 29.614 kb on + strand, within DDA3937_RS00125 at 29.653 kb on + strand, within DDA3937_RS00125 at 29.653 kb on + strand, within DDA3937_RS00125 at 29.654 kb on - strand, within DDA3937_RS00125 at 29.654 kb on - strand, within DDA3937_RS00125 at 29.788 kb on + strand at 29.788 kb on + strand at 29.789 kb on - strand at 29.830 kb on + strand at 29.831 kb on - strand at 29.831 kb on - strand at 29.957 kb on - strand, within DDA3937_RS00130 at 29.957 kb on - strand, within DDA3937_RS00130 at 29.957 kb on - strand, within DDA3937_RS00130 at 29.957 kb on - strand, within DDA3937_RS00130 at 30.126 kb on - strand, within DDA3937_RS00130 at 30.126 kb on - strand, within DDA3937_RS00130 at 30.139 kb on - strand, within DDA3937_RS00130 at 30.139 kb on - strand, within DDA3937_RS00130 at 30.147 kb on + strand, within DDA3937_RS00130 at 30.147 kb on + strand, within DDA3937_RS00130 at 30.148 kb on - strand, within DDA3937_RS00130 at 30.148 kb on - strand, within DDA3937_RS00130 at 30.148 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.324 kb on - strand, within DDA3937_RS00130 at 30.362 kb on - strand, within DDA3937_RS00130 at 30.362 kb on - strand, within DDA3937_RS00130 at 30.362 kb on - strand, within DDA3937_RS00130 at 30.400 kb on - strand, within DDA3937_RS00130 at 30.400 kb on - strand, within DDA3937_RS00130 at 30.400 kb on - strand, within DDA3937_RS00130 at 30.591 kb on - strand, within DDA3937_RS00130 at 30.789 kb on - strand at 30.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 27,396 + DDA3937_RS00120 0.53 -0.9 27,517 - DDA3937_RS00120 0.61 -1.0 27,610 - DDA3937_RS00120 0.68 +0.2 27,610 - DDA3937_RS00120 0.68 -0.4 27,611 + DDA3937_RS00120 0.68 +1.4 27,611 + DDA3937_RS00120 0.68 -1.7 27,611 + +0.7 27,611 + DDA3937_RS00120 0.68 -0.5 27,611 + DDA3937_RS00120 0.68 -0.3 27,611 + DDA3937_RS00120 0.68 +0.6 27,611 + DDA3937_RS00120 0.68 -2.1 27,611 + DDA3937_RS00120 0.68 -0.1 27,611 + DDA3937_RS00120 0.68 -2.4 27,612 - DDA3937_RS00120 0.68 +0.1 27,612 - DDA3937_RS00120 0.68 -1.0 27,612 - -1.9 27,612 - DDA3937_RS00120 0.68 +0.2 27,612 - DDA3937_RS00120 0.68 -0.8 27,612 - DDA3937_RS00120 0.68 -0.3 27,612 - DDA3937_RS00120 0.68 -0.6 27,662 + DDA3937_RS00120 0.72 -1.1 27,662 + DDA3937_RS00120 0.72 -0.2 27,663 - DDA3937_RS00120 0.72 -0.1 27,663 - DDA3937_RS00120 0.72 -0.2 27,663 - DDA3937_RS00120 0.72 -1.4 27,663 - DDA3937_RS00120 0.72 +0.6 27,663 - DDA3937_RS00120 0.72 -0.0 27,663 - DDA3937_RS00120 0.72 -0.6 27,678 + DDA3937_RS00120 0.73 -0.6 27,679 - DDA3937_RS00120 0.73 -0.9 27,679 - DDA3937_RS00120 0.73 +0.5 27,708 + DDA3937_RS00120 0.75 +0.1 27,708 + DDA3937_RS00120 0.75 +0.2 27,708 + DDA3937_RS00120 0.75 +0.2 27,709 - DDA3937_RS00120 0.75 +0.2 27,709 - DDA3937_RS00120 0.75 +0.6 27,709 - DDA3937_RS00120 0.75 -1.6 27,711 + DDA3937_RS00120 0.76 +0.0 27,711 + DDA3937_RS00120 0.76 +1.9 27,711 + DDA3937_RS00120 0.76 +0.6 27,712 - DDA3937_RS00120 0.76 +0.7 27,712 - DDA3937_RS00120 0.76 +0.2 27,712 - DDA3937_RS00120 0.76 +0.1 27,790 + DDA3937_RS00120 0.81 -0.3 27,790 + DDA3937_RS00120 0.81 -0.7 27,790 + DDA3937_RS00120 0.81 +1.2 27,790 + DDA3937_RS00120 0.81 -0.5 27,790 + DDA3937_RS00120 0.81 -0.4 27,790 + DDA3937_RS00120 0.81 -0.9 27,790 + DDA3937_RS00120 0.81 -0.1 27,791 - DDA3937_RS00120 0.81 +0.3 27,791 - DDA3937_RS00120 0.81 +0.2 27,791 - DDA3937_RS00120 0.81 -0.4 27,791 - DDA3937_RS00120 0.81 +0.4 27,794 - DDA3937_RS00120 0.82 -2.3 27,794 - DDA3937_RS00120 0.82 +2.3 27,794 - DDA3937_RS00120 0.82 -0.5 27,794 - DDA3937_RS00120 0.82 +0.3 27,794 - DDA3937_RS00120 0.82 -1.6 27,846 + DDA3937_RS00120 0.85 +0.7 27,846 + DDA3937_RS00120 0.85 -1.0 27,868 - DDA3937_RS00120 0.87 +0.1 27,923 + -0.2 27,923 + -1.1 27,977 + +1.0 27,977 + -1.3 27,978 - +0.7 27,978 - -0.2 27,999 + +0.2 27,999 + +0.1 27,999 + -1.4 27,999 + +0.6 27,999 + +0.4 27,999 + -2.4 28,000 - -0.5 28,000 - +0.4 28,000 - -2.6 28,000 - -1.3 28,000 - -0.1 28,000 - +0.0 28,000 - -0.5 28,000 - -0.5 28,000 - -0.3 28,040 + -0.1 28,040 + -0.3 28,062 + -0.1 28,062 + -0.3 28,107 + -0.3 28,107 + -0.7 28,107 + +0.7 28,108 - +0.1 28,122 + -1.1 28,122 + +0.3 28,123 - -0.1 28,123 - +0.6 28,274 + -0.0 28,275 - +0.0 28,275 - +0.1 28,275 - +0.2 28,275 - -0.9 28,275 - -0.4 28,275 - -0.3 28,294 + -0.5 28,294 + -1.3 28,294 + -1.8 28,294 + -1.9 28,294 + -0.5 28,294 + +0.2 28,295 - +0.3 28,300 - +0.1 28,306 + -1.7 28,306 + -0.4 28,307 - +0.5 28,307 - -0.2 28,307 - -1.5 28,320 + -0.3 28,320 + -0.5 28,320 + +1.1 28,321 - -1.3 28,325 + +0.2 28,325 + +0.2 28,325 + -0.8 28,325 + -1.0 28,326 - +0.1 28,326 - -1.0 28,326 - +0.2 28,327 + -0.8 28,327 + +0.4 28,328 - +0.7 28,328 - -0.3 28,328 - -0.9 28,328 - -0.3 28,328 - -1.1 28,328 - +1.1 28,372 + +0.2 28,829 + DDA3937_RS00125 0.31 -1.3 29,438 + DDA3937_RS00125 0.74 -0.3 29,614 + DDA3937_RS00125 0.87 +0.5 29,653 + DDA3937_RS00125 0.89 -1.6 29,653 + DDA3937_RS00125 0.89 -1.9 29,654 - DDA3937_RS00125 0.89 -1.3 29,654 - DDA3937_RS00125 0.89 -2.3 29,788 + +0.7 29,788 + -0.9 29,789 - -1.2 29,830 + +0.7 29,831 - -0.7 29,831 - -1.1 29,957 - DDA3937_RS00130 0.14 +0.1 29,957 - DDA3937_RS00130 0.14 -0.6 29,957 - DDA3937_RS00130 0.14 -0.5 29,957 - DDA3937_RS00130 0.14 +1.3 30,126 - DDA3937_RS00130 0.30 -0.3 30,126 - DDA3937_RS00130 0.30 +0.1 30,139 - DDA3937_RS00130 0.31 -1.9 30,139 - DDA3937_RS00130 0.31 -1.0 30,147 + DDA3937_RS00130 0.32 -1.6 30,147 + DDA3937_RS00130 0.32 -2.1 30,148 - DDA3937_RS00130 0.32 -0.9 30,148 - DDA3937_RS00130 0.32 -0.4 30,148 - DDA3937_RS00130 0.32 +0.7 30,191 - DDA3937_RS00130 0.36 -0.7 30,191 - DDA3937_RS00130 0.36 -0.9 30,191 - DDA3937_RS00130 0.36 -2.6 30,191 - DDA3937_RS00130 0.36 +0.1 30,324 - DDA3937_RS00130 0.49 -0.6 30,362 - DDA3937_RS00130 0.52 -0.3 30,362 - DDA3937_RS00130 0.52 +0.9 30,362 - DDA3937_RS00130 0.52 -0.0 30,400 - DDA3937_RS00130 0.56 -0.6 30,400 - DDA3937_RS00130 0.56 -0.9 30,400 - DDA3937_RS00130 0.56 +0.3 30,591 - DDA3937_RS00130 0.74 -0.3 30,789 - -3.8 30,798 + -0.0
Or see this region's nucleotide sequence