Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00360 and DDA3937_RS22940 overlap by 8 nucleotides DDA3937_RS22940 and DDA3937_RS00365 overlap by 26 nucleotides
DDA3937_RS00360: DDA3937_RS00360 - methyl-accepting chemotaxis protein, at 82,990 to 84,996
_RS00360
DDA3937_RS22940: DDA3937_RS22940 - hypothetical protein, at 84,989 to 85,255
_RS22940
DDA3937_RS00365: DDA3937_RS00365 - sugar-phosphatase, at 85,230 to 86,045
_RS00365
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2 at 84.052 kb on - strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.074 kb on + strand, within DDA3937_RS00360 at 84.125 kb on + strand, within DDA3937_RS00360 at 84.125 kb on + strand, within DDA3937_RS00360 at 84.126 kb on - strand, within DDA3937_RS00360 at 84.213 kb on - strand, within DDA3937_RS00360 at 84.213 kb on - strand, within DDA3937_RS00360 at 84.257 kb on + strand, within DDA3937_RS00360 at 84.258 kb on - strand, within DDA3937_RS00360 at 84.264 kb on + strand, within DDA3937_RS00360 at 84.265 kb on - strand, within DDA3937_RS00360 at 84.265 kb on - strand, within DDA3937_RS00360 at 84.265 kb on - strand, within DDA3937_RS00360 at 84.292 kb on - strand, within DDA3937_RS00360 at 84.324 kb on - strand, within DDA3937_RS00360 at 84.384 kb on + strand, within DDA3937_RS00360 at 84.385 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.387 kb on - strand, within DDA3937_RS00360 at 84.392 kb on + strand, within DDA3937_RS00360 at 84.393 kb on - strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.396 kb on + strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.397 kb on - strand, within DDA3937_RS00360 at 84.398 kb on + strand, within DDA3937_RS00360 at 84.398 kb on + strand, within DDA3937_RS00360 at 84.398 kb on + strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.399 kb on - strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.443 kb on + strand, within DDA3937_RS00360 at 84.444 kb on - strand, within DDA3937_RS00360 at 84.444 kb on - strand, within DDA3937_RS00360 at 84.444 kb on - strand, within DDA3937_RS00360 at 84.447 kb on - strand, within DDA3937_RS00360 at 84.447 kb on - strand, within DDA3937_RS00360 at 84.470 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.566 kb on + strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.567 kb on - strand, within DDA3937_RS00360 at 84.742 kb on + strand, within DDA3937_RS00360 at 84.743 kb on - strand, within DDA3937_RS00360 at 84.743 kb on - strand, within DDA3937_RS00360 at 84.779 kb on + strand, within DDA3937_RS00360 at 84.779 kb on + strand, within DDA3937_RS00360 at 84.780 kb on - strand, within DDA3937_RS00360 at 84.797 kb on - strand at 84.862 kb on - strand at 84.873 kb on + strand at 84.891 kb on + strand at 84.892 kb on - strand at 84.892 kb on - strand at 84.913 kb on - strand at 84.963 kb on + strand at 85.103 kb on + strand, within DDA3937_RS22940 at 85.103 kb on + strand at 85.133 kb on - strand, within DDA3937_RS22940 at 85.133 kb on - strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.137 kb on + strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.138 kb on - strand, within DDA3937_RS22940 at 85.147 kb on + strand, within DDA3937_RS22940 at 85.203 kb on + strand, within DDA3937_RS22940 at 85.207 kb on + strand, within DDA3937_RS22940 at 85.207 kb on + strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.208 kb on - strand, within DDA3937_RS22940 at 85.217 kb on - strand, within DDA3937_RS22940 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.341 kb on + strand, within DDA3937_RS00365 at 85.342 kb on - strand, within DDA3937_RS00365 at 85.342 kb on - strand, within DDA3937_RS00365 at 85.342 kb on - strand, within DDA3937_RS00365 at 85.386 kb on + strand, within DDA3937_RS00365 at 85.422 kb on + strand, within DDA3937_RS00365 at 85.423 kb on - strand, within DDA3937_RS00365 at 85.423 kb on - strand, within DDA3937_RS00365 at 85.423 kb on - strand, within DDA3937_RS00365 at 85.506 kb on + strand, within DDA3937_RS00365 at 85.570 kb on - strand, within DDA3937_RS00365 at 85.570 kb on - strand at 85.570 kb on - strand, within DDA3937_RS00365 at 85.602 kb on + strand, within DDA3937_RS00365 at 85.602 kb on + strand, within DDA3937_RS00365 at 85.603 kb on - strand, within DDA3937_RS00365 at 85.605 kb on - strand, within DDA3937_RS00365 at 85.605 kb on - strand, within DDA3937_RS00365 at 85.762 kb on - strand, within DDA3937_RS00365 at 85.788 kb on + strand, within DDA3937_RS00365 at 85.789 kb on - strand, within DDA3937_RS00365 at 85.943 kb on + strand, within DDA3937_RS00365 at 85.982 kb on + strand at 86.013 kb on + strand at 86.013 kb on + strand at 86.063 kb on + strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.064 kb on - strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.065 kb on + strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.066 kb on - strand at 86.068 kb on - strand at 86.068 kb on - strand at 86.076 kb on + strand at 86.076 kb on + strand at 86.077 kb on - strand at 86.106 kb on + strand at 86.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 84,052 - DDA3937_RS00360 0.53 -0.3 84,074 + DDA3937_RS00360 0.54 +2.3 84,074 + DDA3937_RS00360 0.54 +0.1 84,074 + DDA3937_RS00360 0.54 +0.5 84,074 + DDA3937_RS00360 0.54 +0.2 84,125 + DDA3937_RS00360 0.57 +0.2 84,125 + DDA3937_RS00360 0.57 +1.3 84,126 - DDA3937_RS00360 0.57 +0.3 84,213 - DDA3937_RS00360 0.61 -0.1 84,213 - DDA3937_RS00360 0.61 -0.4 84,257 + DDA3937_RS00360 0.63 +0.1 84,258 - DDA3937_RS00360 0.63 -1.2 84,264 + DDA3937_RS00360 0.63 +0.3 84,265 - DDA3937_RS00360 0.64 -0.4 84,265 - DDA3937_RS00360 0.64 -0.0 84,265 - DDA3937_RS00360 0.64 +1.3 84,292 - DDA3937_RS00360 0.65 -0.3 84,324 - DDA3937_RS00360 0.66 +1.2 84,384 + DDA3937_RS00360 0.69 +0.5 84,385 - DDA3937_RS00360 0.70 +1.7 84,387 - DDA3937_RS00360 0.70 -0.3 84,387 - DDA3937_RS00360 0.70 -0.4 84,387 - DDA3937_RS00360 0.70 -0.6 84,387 - DDA3937_RS00360 0.70 -0.2 84,392 + DDA3937_RS00360 0.70 -1.0 84,393 - DDA3937_RS00360 0.70 -0.3 84,396 + DDA3937_RS00360 0.70 -0.5 84,396 + DDA3937_RS00360 0.70 +0.6 84,396 + DDA3937_RS00360 0.70 -0.3 84,396 + DDA3937_RS00360 0.70 +0.3 84,396 + DDA3937_RS00360 0.70 -1.8 84,396 + DDA3937_RS00360 0.70 +0.5 84,396 + DDA3937_RS00360 0.70 +0.1 84,396 + DDA3937_RS00360 0.70 +0.5 84,396 + DDA3937_RS00360 0.70 +1.7 84,397 - DDA3937_RS00360 0.70 +0.1 84,397 - DDA3937_RS00360 0.70 -0.8 84,397 - DDA3937_RS00360 0.70 -2.3 84,397 - DDA3937_RS00360 0.70 +0.7 84,397 - DDA3937_RS00360 0.70 +0.1 84,397 - DDA3937_RS00360 0.70 -0.3 84,397 - DDA3937_RS00360 0.70 -0.3 84,397 - DDA3937_RS00360 0.70 -0.0 84,398 + DDA3937_RS00360 0.70 -0.3 84,398 + DDA3937_RS00360 0.70 +1.6 84,398 + DDA3937_RS00360 0.70 -0.3 84,399 - DDA3937_RS00360 0.70 -2.1 84,399 - DDA3937_RS00360 0.70 -0.1 84,399 - DDA3937_RS00360 0.70 -0.8 84,399 - DDA3937_RS00360 0.70 -0.5 84,443 + DDA3937_RS00360 0.72 -1.7 84,443 + DDA3937_RS00360 0.72 -0.3 84,443 + DDA3937_RS00360 0.72 -0.3 84,443 + DDA3937_RS00360 0.72 -0.8 84,443 + DDA3937_RS00360 0.72 -1.2 84,444 - DDA3937_RS00360 0.72 -1.4 84,444 - DDA3937_RS00360 0.72 -0.1 84,444 - DDA3937_RS00360 0.72 +0.4 84,447 - DDA3937_RS00360 0.73 +0.7 84,447 - DDA3937_RS00360 0.73 -0.2 84,470 + DDA3937_RS00360 0.74 -0.6 84,566 + DDA3937_RS00360 0.79 +0.9 84,566 + DDA3937_RS00360 0.79 -0.1 84,566 + DDA3937_RS00360 0.79 -2.1 84,566 + DDA3937_RS00360 0.79 -0.4 84,567 - DDA3937_RS00360 0.79 -0.1 84,567 - DDA3937_RS00360 0.79 -0.8 84,567 - DDA3937_RS00360 0.79 -0.0 84,567 - DDA3937_RS00360 0.79 -0.3 84,742 + DDA3937_RS00360 0.87 -1.1 84,743 - DDA3937_RS00360 0.87 -0.5 84,743 - DDA3937_RS00360 0.87 -0.1 84,779 + DDA3937_RS00360 0.89 -1.3 84,779 + DDA3937_RS00360 0.89 -0.5 84,780 - DDA3937_RS00360 0.89 +0.1 84,797 - -0.6 84,862 - -0.4 84,873 + +0.1 84,891 + -0.9 84,892 - -1.1 84,892 - -0.2 84,913 - -1.3 84,963 + -0.4 85,103 + DDA3937_RS22940 0.43 +0.3 85,103 + -1.3 85,133 - DDA3937_RS22940 0.54 +1.4 85,133 - DDA3937_RS22940 0.54 +0.9 85,137 + DDA3937_RS22940 0.55 +0.2 85,137 + DDA3937_RS22940 0.55 +0.7 85,137 + DDA3937_RS22940 0.55 -0.7 85,137 + DDA3937_RS22940 0.55 +1.2 85,138 - DDA3937_RS22940 0.56 -1.6 85,138 - DDA3937_RS22940 0.56 -0.5 85,138 - DDA3937_RS22940 0.56 -0.1 85,138 - DDA3937_RS22940 0.56 -2.1 85,138 - DDA3937_RS22940 0.56 -1.3 85,147 + DDA3937_RS22940 0.59 -1.6 85,203 + DDA3937_RS22940 0.80 -1.7 85,207 + DDA3937_RS22940 0.82 -0.7 85,207 + DDA3937_RS22940 0.82 +0.3 85,208 - DDA3937_RS22940 0.82 -0.3 85,208 - DDA3937_RS22940 0.82 -0.6 85,208 - DDA3937_RS22940 0.82 -0.7 85,208 - DDA3937_RS22940 0.82 -0.4 85,208 - DDA3937_RS22940 0.82 -0.5 85,208 - DDA3937_RS22940 0.82 -0.4 85,208 - DDA3937_RS22940 0.82 -2.1 85,208 - DDA3937_RS22940 0.82 +0.7 85,217 - DDA3937_RS22940 0.85 +0.2 85,341 + DDA3937_RS00365 0.14 +0.2 85,341 + DDA3937_RS00365 0.14 -0.2 85,341 + DDA3937_RS00365 0.14 -0.1 85,341 + DDA3937_RS00365 0.14 -0.3 85,341 + DDA3937_RS00365 0.14 +0.2 85,341 + DDA3937_RS00365 0.14 -1.8 85,341 + DDA3937_RS00365 0.14 -0.7 85,341 + DDA3937_RS00365 0.14 -1.1 85,341 + DDA3937_RS00365 0.14 +0.7 85,341 + DDA3937_RS00365 0.14 -0.9 85,342 - DDA3937_RS00365 0.14 +0.5 85,342 - DDA3937_RS00365 0.14 -1.7 85,342 - DDA3937_RS00365 0.14 -0.3 85,386 + DDA3937_RS00365 0.19 -0.0 85,422 + DDA3937_RS00365 0.24 -0.3 85,423 - DDA3937_RS00365 0.24 -0.4 85,423 - DDA3937_RS00365 0.24 -0.3 85,423 - DDA3937_RS00365 0.24 -0.7 85,506 + DDA3937_RS00365 0.34 +0.4 85,570 - DDA3937_RS00365 0.42 +0.7 85,570 - +0.7 85,570 - DDA3937_RS00365 0.42 -0.2 85,602 + DDA3937_RS00365 0.46 -0.2 85,602 + DDA3937_RS00365 0.46 -2.4 85,603 - DDA3937_RS00365 0.46 +0.4 85,605 - DDA3937_RS00365 0.46 +0.3 85,605 - DDA3937_RS00365 0.46 +0.5 85,762 - DDA3937_RS00365 0.65 -0.3 85,788 + DDA3937_RS00365 0.68 -0.8 85,789 - DDA3937_RS00365 0.69 -0.2 85,943 + DDA3937_RS00365 0.87 +0.8 85,982 + -1.8 86,013 + -0.4 86,013 + +0.7 86,063 + +0.3 86,064 - +1.4 86,064 - +0.6 86,064 - +0.4 86,064 - -0.1 86,064 - -0.2 86,064 - -0.6 86,064 - +0.3 86,064 - +0.1 86,064 - -0.2 86,064 - -0.6 86,064 - -0.7 86,064 - -1.4 86,064 - +0.1 86,064 - -0.6 86,064 - +0.2 86,064 - -0.6 86,064 - +0.3 86,064 - -0.6 86,064 - +0.1 86,064 - +0.1 86,064 - +0.3 86,064 - +0.2 86,065 + +0.1 86,065 + +0.3 86,065 + -0.1 86,065 + -1.0 86,065 + -0.6 86,065 + -0.6 86,065 + -0.2 86,065 + +0.2 86,065 + +0.9 86,065 + -0.2 86,065 + +0.9 86,065 + +0.7 86,065 + -0.9 86,065 + +0.5 86,065 + +1.1 86,065 + -0.0 86,065 + -0.7 86,065 + -0.3 86,065 + -1.1 86,065 + +0.5 86,065 + +0.9 86,065 + -0.6 86,065 + -0.3 86,065 + +2.3 86,065 + -0.0 86,066 - -0.7 86,066 - -0.3 86,066 - +1.3 86,066 - +0.3 86,066 - -1.3 86,066 - -2.3 86,066 - -0.8 86,066 - -0.6 86,066 - +1.3 86,066 - -0.6 86,066 - -0.6 86,066 - +0.2 86,066 - +1.8 86,066 - -0.4 86,066 - +0.5 86,066 - -0.5 86,066 - -1.1 86,066 - +0.3 86,066 - -0.1 86,066 - -0.5 86,066 - -0.8 86,066 - -0.4 86,068 - +1.5 86,068 - +0.6 86,076 + -0.1 86,076 + -0.4 86,077 - -0.8 86,106 + -0.0 86,208 - +1.1
Or see this region's nucleotide sequence