Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19985

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS19980 and DDA3937_RS19985 are separated by 52 nucleotidesDDA3937_RS19985 and DDA3937_RS19990 are separated by 101 nucleotidesDDA3937_RS19990 and DDA3937_RS19995 are separated by 143 nucleotidesDDA3937_RS19995 and DDA3937_RS20000 are separated by 34 nucleotidesDDA3937_RS20000 and DDA3937_RS20005 are separated by 20 nucleotidesDDA3937_RS20005 and DDA3937_RS20010 are separated by 82 nucleotides DDA3937_RS19980: DDA3937_RS19980 - MFS transporter, at 4,550,235 to 4,551,458 _RS19980 DDA3937_RS19985: DDA3937_RS19985 - hypothetical protein, at 4,551,511 to 4,552,965 _RS19985 DDA3937_RS19990: DDA3937_RS19990 - nuclear transport factor 2 family protein, at 4,553,067 to 4,553,402 _RS19990 DDA3937_RS19995: DDA3937_RS19995 - tRNA-Pro, at 4,553,546 to 4,553,622 _RS19995 DDA3937_RS20000: DDA3937_RS20000 - tRNA-Leu, at 4,553,657 to 4,553,742 _RS20000 DDA3937_RS20005: DDA3937_RS20005 - tRNA-His, at 4,553,763 to 4,553,838 _RS20005 DDA3937_RS20010: DDA3937_RS20010 - tRNA-Arg, at 4,553,921 to 4,553,997 _RS20010 Position (kb) 4551 4552 4553Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4550.523 kb on + strand, within DDA3937_RS19980at 4550.551 kb on + strand, within DDA3937_RS19980at 4550.575 kb on + strand, within DDA3937_RS19980at 4550.575 kb on + strand, within DDA3937_RS19980at 4550.683 kb on + strand, within DDA3937_RS19980at 4550.683 kb on + strand, within DDA3937_RS19980at 4550.683 kb on + strand, within DDA3937_RS19980at 4550.683 kb on + strand, within DDA3937_RS19980at 4550.692 kb on + strand, within DDA3937_RS19980at 4550.693 kb on - strand, within DDA3937_RS19980at 4550.770 kb on - strand, within DDA3937_RS19980at 4550.776 kb on - strand, within DDA3937_RS19980at 4550.904 kb on + strand, within DDA3937_RS19980at 4550.904 kb on + strand, within DDA3937_RS19980at 4550.904 kb on + strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strandat 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.905 kb on - strand, within DDA3937_RS19980at 4550.981 kb on + strand, within DDA3937_RS19980at 4550.982 kb on - strand, within DDA3937_RS19980at 4550.982 kb on - strandat 4550.982 kb on - strand, within DDA3937_RS19980at 4550.982 kb on - strand, within DDA3937_RS19980at 4551.093 kb on - strand, within DDA3937_RS19980at 4551.095 kb on + strand, within DDA3937_RS19980at 4551.095 kb on + strand, within DDA3937_RS19980at 4551.095 kb on + strand, within DDA3937_RS19980at 4551.096 kb on - strand, within DDA3937_RS19980at 4551.096 kb on - strand, within DDA3937_RS19980at 4551.096 kb on - strand, within DDA3937_RS19980at 4551.096 kb on - strand, within DDA3937_RS19980at 4551.096 kb on - strand, within DDA3937_RS19980at 4551.100 kb on + strand, within DDA3937_RS19980at 4551.101 kb on - strand, within DDA3937_RS19980at 4551.101 kb on - strand, within DDA3937_RS19980at 4551.127 kb on + strand, within DDA3937_RS19980at 4551.153 kb on + strand, within DDA3937_RS19980at 4551.163 kb on + strand, within DDA3937_RS19980at 4551.163 kb on + strandat 4551.163 kb on + strand, within DDA3937_RS19980at 4551.164 kb on - strand, within DDA3937_RS19980at 4551.164 kb on - strand, within DDA3937_RS19980at 4551.164 kb on - strand, within DDA3937_RS19980at 4551.164 kb on - strand, within DDA3937_RS19980at 4551.164 kb on - strand, within DDA3937_RS19980at 4551.188 kb on + strand, within DDA3937_RS19980at 4551.215 kb on + strand, within DDA3937_RS19980at 4551.216 kb on - strand, within DDA3937_RS19980at 4551.274 kb on + strand, within DDA3937_RS19980at 4551.274 kb on + strand, within DDA3937_RS19980at 4551.274 kb on + strand, within DDA3937_RS19980at 4551.279 kb on - strand, within DDA3937_RS19980at 4551.279 kb on - strand, within DDA3937_RS19980at 4551.291 kb on + strand, within DDA3937_RS19980at 4551.291 kb on + strand, within DDA3937_RS19980at 4551.291 kb on + strand, within DDA3937_RS19980at 4551.291 kb on + strand, within DDA3937_RS19980at 4551.291 kb on + strand, within DDA3937_RS19980at 4551.291 kb on + strand, within DDA3937_RS19980at 4551.291 kb on + strand, within DDA3937_RS19980at 4551.292 kb on - strand, within DDA3937_RS19980at 4551.292 kb on - strand, within DDA3937_RS19980at 4551.292 kb on - strand, within DDA3937_RS19980at 4551.292 kb on - strand, within DDA3937_RS19980at 4551.292 kb on - strand, within DDA3937_RS19980at 4551.292 kb on - strand, within DDA3937_RS19980at 4551.370 kb on + strandat 4551.370 kb on + strandat 4551.371 kb on - strandat 4551.371 kb on - strandat 4551.456 kb on + strandat 4551.457 kb on - strandat 4551.469 kb on + strandat 4551.493 kb on + strandat 4551.494 kb on - strandat 4551.667 kb on + strand, within DDA3937_RS19985at 4551.735 kb on + strand, within DDA3937_RS19985at 4551.735 kb on + strand, within DDA3937_RS19985at 4551.735 kb on + strand, within DDA3937_RS19985at 4551.736 kb on - strand, within DDA3937_RS19985at 4551.812 kb on - strand, within DDA3937_RS19985at 4551.812 kb on - strand, within DDA3937_RS19985at 4551.873 kb on + strand, within DDA3937_RS19985at 4551.873 kb on + strand, within DDA3937_RS19985at 4551.873 kb on + strand, within DDA3937_RS19985at 4551.874 kb on - strand, within DDA3937_RS19985at 4551.874 kb on - strand, within DDA3937_RS19985at 4551.874 kb on - strand, within DDA3937_RS19985at 4551.879 kb on + strand, within DDA3937_RS19985at 4551.879 kb on + strand, within DDA3937_RS19985at 4551.879 kb on + strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.880 kb on - strand, within DDA3937_RS19985at 4551.904 kb on + strand, within DDA3937_RS19985at 4551.905 kb on - strand, within DDA3937_RS19985at 4551.905 kb on - strand, within DDA3937_RS19985at 4551.905 kb on - strand, within DDA3937_RS19985at 4551.905 kb on - strand, within DDA3937_RS19985at 4551.905 kb on - strand, within DDA3937_RS19985at 4551.905 kb on - strand, within DDA3937_RS19985at 4551.952 kb on - strand, within DDA3937_RS19985at 4552.231 kb on + strand, within DDA3937_RS19985at 4552.346 kb on + strand, within DDA3937_RS19985at 4552.449 kb on + strand, within DDA3937_RS19985at 4552.450 kb on - strand, within DDA3937_RS19985at 4552.455 kb on + strand, within DDA3937_RS19985at 4552.455 kb on + strand, within DDA3937_RS19985at 4552.478 kb on - strand, within DDA3937_RS19985at 4552.478 kb on - strand, within DDA3937_RS19985at 4552.478 kb on - strand, within DDA3937_RS19985at 4552.497 kb on + strand, within DDA3937_RS19985at 4552.498 kb on - strand, within DDA3937_RS19985at 4552.586 kb on - strand, within DDA3937_RS19985at 4552.611 kb on + strand, within DDA3937_RS19985at 4552.612 kb on - strand, within DDA3937_RS19985at 4552.648 kb on + strand, within DDA3937_RS19985at 4552.648 kb on + strand, within DDA3937_RS19985at 4552.648 kb on + strand, within DDA3937_RS19985at 4552.648 kb on + strand, within DDA3937_RS19985at 4552.649 kb on - strand, within DDA3937_RS19985at 4552.649 kb on - strand, within DDA3937_RS19985at 4552.649 kb on - strand, within DDA3937_RS19985at 4552.649 kb on - strand, within DDA3937_RS19985at 4552.649 kb on - strand, within DDA3937_RS19985at 4552.759 kb on + strand, within DDA3937_RS19985at 4552.819 kb on + strand, within DDA3937_RS19985at 4552.963 kb on + strandat 4553.009 kb on + strandat 4553.010 kb on - strandat 4553.010 kb on - strandat 4553.077 kb on + strandat 4553.249 kb on - strand, within DDA3937_RS19990at 4553.249 kb on - strand, within DDA3937_RS19990at 4553.249 kb on - strand, within DDA3937_RS19990at 4553.249 kb on - strand, within DDA3937_RS19990at 4553.402 kb on + strandat 4553.402 kb on + strandat 4553.403 kb on - strandat 4553.454 kb on - strandat 4553.457 kb on - strandat 4553.536 kb on - strandat 4553.542 kb on - strandat 4553.542 kb on - strandat 4553.632 kb on - strandat 4553.632 kb on - strandat 4553.636 kb on - strandat 4553.636 kb on - strandat 4553.636 kb on - strandat 4553.636 kb on - strandat 4553.636 kb on - strandat 4553.636 kb on - strandat 4553.636 kb on - strandat 4553.641 kb on - strandat 4553.641 kb on - strandat 4553.641 kb on - strandat 4553.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,550,523 + DDA3937_RS19980 0.24 +0.2
4,550,551 + DDA3937_RS19980 0.26 -0.1
4,550,575 + DDA3937_RS19980 0.28 +1.5
4,550,575 + DDA3937_RS19980 0.28 -1.9
4,550,683 + DDA3937_RS19980 0.37 -0.1
4,550,683 + DDA3937_RS19980 0.37 +0.5
4,550,683 + DDA3937_RS19980 0.37 +1.0
4,550,683 + DDA3937_RS19980 0.37 -0.9
4,550,692 + DDA3937_RS19980 0.37 -0.0
4,550,693 - DDA3937_RS19980 0.37 -0.7
4,550,770 - DDA3937_RS19980 0.44 -0.8
4,550,776 - DDA3937_RS19980 0.44 -0.2
4,550,904 + DDA3937_RS19980 0.55 -0.2
4,550,904 + DDA3937_RS19980 0.55 -0.3
4,550,904 + DDA3937_RS19980 0.55 +0.4
4,550,905 - DDA3937_RS19980 0.55 -0.4
4,550,905 - DDA3937_RS19980 0.55 +0.3
4,550,905 - +1.4
4,550,905 - DDA3937_RS19980 0.55 -0.2
4,550,905 - DDA3937_RS19980 0.55 -0.2
4,550,905 - DDA3937_RS19980 0.55 -0.3
4,550,905 - DDA3937_RS19980 0.55 -1.3
4,550,905 - DDA3937_RS19980 0.55 +0.2
4,550,905 - DDA3937_RS19980 0.55 +0.3
4,550,905 - DDA3937_RS19980 0.55 -0.8
4,550,905 - DDA3937_RS19980 0.55 +0.0
4,550,981 + DDA3937_RS19980 0.61 -0.4
4,550,982 - DDA3937_RS19980 0.61 -0.2
4,550,982 - +0.1
4,550,982 - DDA3937_RS19980 0.61 +0.3
4,550,982 - DDA3937_RS19980 0.61 -0.3
4,551,093 - DDA3937_RS19980 0.70 -0.7
4,551,095 + DDA3937_RS19980 0.70 -1.0
4,551,095 + DDA3937_RS19980 0.70 +0.7
4,551,095 + DDA3937_RS19980 0.70 +0.7
4,551,096 - DDA3937_RS19980 0.70 -0.1
4,551,096 - DDA3937_RS19980 0.70 -1.7
4,551,096 - DDA3937_RS19980 0.70 -0.7
4,551,096 - DDA3937_RS19980 0.70 -0.7
4,551,096 - DDA3937_RS19980 0.70 -0.4
4,551,100 + DDA3937_RS19980 0.71 -0.3
4,551,101 - DDA3937_RS19980 0.71 -0.2
4,551,101 - DDA3937_RS19980 0.71 -0.2
4,551,127 + DDA3937_RS19980 0.73 -0.6
4,551,153 + DDA3937_RS19980 0.75 +0.3
4,551,163 + DDA3937_RS19980 0.76 -1.1
4,551,163 + +0.3
4,551,163 + DDA3937_RS19980 0.76 +1.4
4,551,164 - DDA3937_RS19980 0.76 -1.5
4,551,164 - DDA3937_RS19980 0.76 -1.0
4,551,164 - DDA3937_RS19980 0.76 +0.3
4,551,164 - DDA3937_RS19980 0.76 -0.0
4,551,164 - DDA3937_RS19980 0.76 -0.1
4,551,188 + DDA3937_RS19980 0.78 +0.1
4,551,215 + DDA3937_RS19980 0.80 -2.1
4,551,216 - DDA3937_RS19980 0.80 +0.9
4,551,274 + DDA3937_RS19980 0.85 -0.2
4,551,274 + DDA3937_RS19980 0.85 +0.4
4,551,274 + DDA3937_RS19980 0.85 +0.7
4,551,279 - DDA3937_RS19980 0.85 -0.3
4,551,279 - DDA3937_RS19980 0.85 -0.5
4,551,291 + DDA3937_RS19980 0.86 +0.8
4,551,291 + DDA3937_RS19980 0.86 -0.1
4,551,291 + DDA3937_RS19980 0.86 -2.1
4,551,291 + DDA3937_RS19980 0.86 +1.2
4,551,291 + DDA3937_RS19980 0.86 +0.0
4,551,291 + DDA3937_RS19980 0.86 -0.4
4,551,291 + DDA3937_RS19980 0.86 -0.2
4,551,292 - DDA3937_RS19980 0.86 -0.6
4,551,292 - DDA3937_RS19980 0.86 +0.2
4,551,292 - DDA3937_RS19980 0.86 +0.3
4,551,292 - DDA3937_RS19980 0.86 -0.3
4,551,292 - DDA3937_RS19980 0.86 -0.9
4,551,292 - DDA3937_RS19980 0.86 -0.6
4,551,370 + -0.1
4,551,370 + +0.4
4,551,371 - -0.2
4,551,371 - -0.1
4,551,456 + -1.0
4,551,457 - +0.2
4,551,469 + +0.1
4,551,493 + -0.7
4,551,494 - +1.1
4,551,667 + DDA3937_RS19985 0.11 -0.9
4,551,735 + DDA3937_RS19985 0.15 +0.5
4,551,735 + DDA3937_RS19985 0.15 +0.8
4,551,735 + DDA3937_RS19985 0.15 +2.7
4,551,736 - DDA3937_RS19985 0.15 +0.1
4,551,812 - DDA3937_RS19985 0.21 +0.9
4,551,812 - DDA3937_RS19985 0.21 +0.1
4,551,873 + DDA3937_RS19985 0.25 -0.3
4,551,873 + DDA3937_RS19985 0.25 +1.1
4,551,873 + DDA3937_RS19985 0.25 +0.4
4,551,874 - DDA3937_RS19985 0.25 -0.5
4,551,874 - DDA3937_RS19985 0.25 -0.6
4,551,874 - DDA3937_RS19985 0.25 -1.6
4,551,879 + DDA3937_RS19985 0.25 +0.4
4,551,879 + DDA3937_RS19985 0.25 +0.9
4,551,879 + DDA3937_RS19985 0.25 +0.6
4,551,880 - DDA3937_RS19985 0.25 -0.2
4,551,880 - DDA3937_RS19985 0.25 +0.4
4,551,880 - DDA3937_RS19985 0.25 +2.2
4,551,880 - DDA3937_RS19985 0.25 -1.3
4,551,880 - DDA3937_RS19985 0.25 +0.7
4,551,880 - DDA3937_RS19985 0.25 -0.1
4,551,880 - DDA3937_RS19985 0.25 -1.3
4,551,880 - DDA3937_RS19985 0.25 -0.1
4,551,904 + DDA3937_RS19985 0.27 +1.1
4,551,905 - DDA3937_RS19985 0.27 +0.3
4,551,905 - DDA3937_RS19985 0.27 -0.3
4,551,905 - DDA3937_RS19985 0.27 -1.1
4,551,905 - DDA3937_RS19985 0.27 -0.1
4,551,905 - DDA3937_RS19985 0.27 -1.0
4,551,905 - DDA3937_RS19985 0.27 +0.1
4,551,952 - DDA3937_RS19985 0.30 +0.7
4,552,231 + DDA3937_RS19985 0.49 -0.8
4,552,346 + DDA3937_RS19985 0.57 +0.3
4,552,449 + DDA3937_RS19985 0.64 +1.1
4,552,450 - DDA3937_RS19985 0.65 -1.8
4,552,455 + DDA3937_RS19985 0.65 -0.7
4,552,455 + DDA3937_RS19985 0.65 -0.2
4,552,478 - DDA3937_RS19985 0.66 -0.3
4,552,478 - DDA3937_RS19985 0.66 +0.7
4,552,478 - DDA3937_RS19985 0.66 -1.1
4,552,497 + DDA3937_RS19985 0.68 -0.6
4,552,498 - DDA3937_RS19985 0.68 -0.3
4,552,586 - DDA3937_RS19985 0.74 -0.4
4,552,611 + DDA3937_RS19985 0.76 +0.3
4,552,612 - DDA3937_RS19985 0.76 -0.5
4,552,648 + DDA3937_RS19985 0.78 +0.3
4,552,648 + DDA3937_RS19985 0.78 -0.4
4,552,648 + DDA3937_RS19985 0.78 +0.5
4,552,648 + DDA3937_RS19985 0.78 +0.1
4,552,649 - DDA3937_RS19985 0.78 +0.9
4,552,649 - DDA3937_RS19985 0.78 +3.1
4,552,649 - DDA3937_RS19985 0.78 -0.1
4,552,649 - DDA3937_RS19985 0.78 -2.1
4,552,649 - DDA3937_RS19985 0.78 -1.1
4,552,759 + DDA3937_RS19985 0.86 +0.7
4,552,819 + DDA3937_RS19985 0.90 -0.2
4,552,963 + +0.9
4,553,009 + +0.4
4,553,010 - -0.4
4,553,010 - -0.5
4,553,077 + +0.4
4,553,249 - DDA3937_RS19990 0.54 +0.1
4,553,249 - DDA3937_RS19990 0.54 -0.4
4,553,249 - DDA3937_RS19990 0.54 +0.7
4,553,249 - DDA3937_RS19990 0.54 -0.3
4,553,402 + -1.2
4,553,402 + -0.1
4,553,403 - -0.2
4,553,454 - -0.5
4,553,457 - -0.0
4,553,536 - -0.1
4,553,542 - -0.1
4,553,542 - +0.1
4,553,632 - -0.9
4,553,632 - +0.7
4,553,636 - +0.5
4,553,636 - -0.8
4,553,636 - -0.6
4,553,636 - -0.8
4,553,636 - -0.9
4,553,636 - +1.2
4,553,636 - -2.6
4,553,641 - +0.7
4,553,641 - -0.8
4,553,641 - +0.3
4,553,641 - -0.1

Or see this region's nucleotide sequence