Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19680

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,478,417	+		DDA3937_RS19675	0.12	+0.2
4,478,418	-		DDA3937_RS19675	0.13	+0.8
4,478,434	+		DDA3937_RS19675	0.15	+0.2
4,478,435	-		DDA3937_RS19675	0.15	+0.7
4,478,510	+		DDA3937_RS19675	0.24	+0.1
4,478,510	+		DDA3937_RS19675	0.24	+0.3
4,478,510	+		DDA3937_RS19675	0.24	-0.1
4,478,510	+		DDA3937_RS19675	0.24	-0.9
4,478,511	-		DDA3937_RS19675	0.24	-0.0
4,478,526	-		DDA3937_RS19675	0.26	-0.5
4,478,552	+		DDA3937_RS19675	0.29	-1.4
4,478,552	+		DDA3937_RS19675	0.29	+0.1
4,478,603	-		DDA3937_RS19675	0.35	+0.5
4,478,660	+		DDA3937_RS19675	0.42	-0.2
4,478,814	-		DDA3937_RS19675	0.61	+0.1
4,478,882	+		DDA3937_RS19675	0.69	-0.4
4,479,027	+		DDA3937_RS19675	0.86	-0.4
4,479,081	+				-0.5
4,479,081	+				+1.1
4,479,081	+				+0.5
4,479,081	+				-0.3
4,479,081	+				+0.1
4,479,081	+				-1.7
4,479,081	+				-0.1
4,479,081	+				+0.4
4,479,081	+				+0.1
4,479,081	+				-0.1
4,479,081	+				-0.1
4,479,081	+				+0.2
4,479,082	-				-0.4
4,479,082	-				+0.5
4,479,082	-				-0.2
4,479,082	-				+1.1
4,479,082	-				+0.4
4,479,083	+				+0.4
4,479,083	+				+0.2
4,479,083	+				-0.0
4,479,084	-				-0.4
4,479,084	-				-0.3
4,479,171	+				-0.4
4,479,171	+				+1.6
4,479,171	+				+0.3
4,479,171	+				-0.9
4,479,172	-				-0.9
4,479,172	-				+0.7
4,479,194	+				+0.0
4,479,194	+				-0.7
4,479,226	+				-1.3
4,479,237	-				-1.1
4,479,331	-				+0.4
4,479,353	+				+1.1
4,479,354	-				+0.1
4,479,390	+				-0.2
4,479,390	+				+0.6
4,479,390	+				-0.1
4,479,390	+				-0.4
4,479,391	-				-0.2
4,479,391	-				-0.0
4,479,410	+				+0.9
4,479,411	-				-0.3
4,479,416	+				+0.2
4,479,416	+				-0.2
4,479,416	+				-0.1
4,479,417	-				+0.6
4,479,417	-				+0.2
4,479,453	+				-0.1
4,479,465	+				-0.5
4,479,466	-				+0.3
4,479,466	-				-0.9
4,479,487	-				-0.0
4,479,523	+				-0.1
4,479,523	+				-0.1
4,479,523	+				-1.1
4,479,523	+				-0.3
4,479,524	-				+0.5
4,479,674	-		DDA3937_RS19680	0.21	-0.9
4,479,702	-		DDA3937_RS19680	0.24	-2.2
4,479,749	+		DDA3937_RS19680	0.27	-1.4
4,479,750	-		DDA3937_RS19680	0.27	-1.1
4,479,750	-		DDA3937_RS19680	0.27	-0.7
4,479,750	-		DDA3937_RS19680	0.27	+0.6
4,479,956	+		DDA3937_RS19680	0.44	-0.4
4,479,961	+		DDA3937_RS19680	0.45	-0.5
4,479,962	-		DDA3937_RS19680	0.45	-0.7
4,479,962	-		DDA3937_RS19680	0.45	-1.2
4,479,962	-		DDA3937_RS19680	0.45	+0.2
4,479,962	-		DDA3937_RS19680	0.45	+0.5
4,479,963	+		DDA3937_RS19680	0.45	-1.6
4,479,998	+		DDA3937_RS19680	0.48	+0.8
4,479,999	-		DDA3937_RS19680	0.48	+0.1
4,479,999	-		DDA3937_RS19680	0.48	-0.7
4,480,002	+		DDA3937_RS19680	0.48	-1.0
4,480,002	+				-0.4
4,480,002	+		DDA3937_RS19680	0.48	+1.2
4,480,003	-		DDA3937_RS19680	0.48	-1.3
4,480,003	-		DDA3937_RS19680	0.48	-0.4
4,480,003	-		DDA3937_RS19680	0.48	-0.3
4,480,042	-		DDA3937_RS19680	0.52	-1.4
4,480,089	-		DDA3937_RS19680	0.55	-0.0
4,480,114	+		DDA3937_RS19680	0.58	+0.6
4,480,115	-		DDA3937_RS19680	0.58	-0.4
4,480,136	+		DDA3937_RS19680	0.59	-0.4
4,480,193	+		DDA3937_RS19680	0.64	+0.0
4,480,194	-		DDA3937_RS19680	0.64	-0.9
4,480,213	-		DDA3937_RS19680	0.66	+1.6
4,480,213	-		DDA3937_RS19680	0.66	-0.7
4,480,229	-		DDA3937_RS19680	0.67	-0.1
4,480,229	-		DDA3937_RS19680	0.67	-0.2
4,480,242	+		DDA3937_RS19680	0.68	-1.8
4,480,242	+		DDA3937_RS19680	0.68	-0.1
4,480,243	-		DDA3937_RS19680	0.68	-0.4
4,480,243	-		DDA3937_RS19680	0.68	+0.6
4,480,243	-		DDA3937_RS19680	0.68	+1.2
4,480,250	+		DDA3937_RS19680	0.69	-0.1
4,480,251	-		DDA3937_RS19680	0.69	-0.7
4,480,452	-		DDA3937_RS19680	0.85	-0.3
4,480,533	+				-0.9
4,480,534	-				-0.7
4,480,583	+				+0.2
4,480,642	+				-1.7
4,480,642	+				+0.4
4,480,642	+				-1.2
4,480,642	+				-0.4
4,480,643	-				+0.6
4,480,643	-				+0.8
4,480,643	-				-1.7
4,480,685	-				-0.3
4,480,685	-				-0.4
4,480,685	-				+0.3
4,480,704	-				+0.7
4,480,783	-		DDA3937_RS19685	0.10	+0.6
4,480,903	+		DDA3937_RS19685	0.23	-0.7
4,480,904	-		DDA3937_RS19685	0.24	-0.6
4,481,104	-		DDA3937_RS19685	0.45	-0.7
4,481,315	+		DDA3937_RS19685	0.68	+1.2
4,481,349	+		DDA3937_RS19685	0.72	-0.9
4,481,349	+		DDA3937_RS19685	0.72	-1.0
4,481,349	+		DDA3937_RS19685	0.72	-0.2
4,481,349	+		DDA3937_RS19685	0.72	-0.5
4,481,349	+		DDA3937_RS19685	0.72	-0.2
4,481,350	-		DDA3937_RS19685	0.72	-0.2
4,481,350	-		DDA3937_RS19685	0.72	+0.9
4,481,350	-		DDA3937_RS19685	0.72	+0.3
4,481,350	-		DDA3937_RS19685	0.72	-0.1
4,481,362	-		DDA3937_RS19685	0.73	-0.1
4,481,467	-		DDA3937_RS19685	0.84	-0.2
4,481,467	-		DDA3937_RS19685	0.84	+1.2
4,481,499	-		DDA3937_RS19685	0.88	-0.1
4,481,499	-		DDA3937_RS19685	0.88	-0.4
4,481,524	+				-2.1
4,481,524	+				-2.3
4,481,524	+				+0.4
4,481,524	+				+0.3
4,481,524	+				-0.8
4,481,525	-				-0.2
4,481,586	+				-1.0