Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19415 and DDA3937_RS19420 are separated by 65 nucleotides DDA3937_RS19420 and DDA3937_RS19425 are separated by 119 nucleotides DDA3937_RS19425 and DDA3937_RS19430 overlap by 4 nucleotides DDA3937_RS19430 and DDA3937_RS19435 are separated by 126 nucleotides
DDA3937_RS19415: DDA3937_RS19415 - ABC transporter ATP-binding protein, at 4,414,242 to 4,416,161
_RS19415
DDA3937_RS19420: DDA3937_RS19420 - LysE family translocator, at 4,416,227 to 4,416,832
_RS19420
DDA3937_RS19425: DDA3937_RS19425 - hydrolase, at 4,416,952 to 4,417,950
_RS19425
DDA3937_RS19430: DDA3937_RS19430 - YheU family protein, at 4,417,947 to 4,418,183
_RS19430
DDA3937_RS19435: DDA3937_RS19435 - phosphoribulokinase, at 4,418,310 to 4,419,179
_RS19435
Position (kb) 4416
4417
4418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4416.015 kb on + strand at 4416.015 kb on + strand at 4416.016 kb on - strand at 4416.016 kb on - strand at 4416.364 kb on + strand, within DDA3937_RS19420 at 4416.408 kb on + strand, within DDA3937_RS19420 at 4416.409 kb on - strand, within DDA3937_RS19420 at 4416.427 kb on + strand, within DDA3937_RS19420 at 4416.428 kb on - strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.498 kb on + strand, within DDA3937_RS19420 at 4416.499 kb on - strand, within DDA3937_RS19420 at 4416.499 kb on - strand, within DDA3937_RS19420 at 4416.547 kb on - strand, within DDA3937_RS19420 at 4416.585 kb on + strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.586 kb on - strand, within DDA3937_RS19420 at 4416.599 kb on + strand, within DDA3937_RS19420 at 4416.600 kb on - strand, within DDA3937_RS19420 at 4416.600 kb on - strand, within DDA3937_RS19420 at 4416.627 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.673 kb on + strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.674 kb on - strand, within DDA3937_RS19420 at 4416.694 kb on + strand, within DDA3937_RS19420 at 4416.694 kb on + strand, within DDA3937_RS19420 at 4416.695 kb on - strand, within DDA3937_RS19420 at 4416.749 kb on - strand at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.752 kb on + strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.753 kb on - strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.757 kb on + strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.758 kb on - strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.760 kb on + strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.761 kb on - strand, within DDA3937_RS19420 at 4416.763 kb on + strand, within DDA3937_RS19420 at 4416.779 kb on - strand at 4416.870 kb on + strand at 4416.870 kb on + strand at 4416.870 kb on + strand at 4416.870 kb on + strand at 4416.871 kb on - strand at 4416.871 kb on - strand at 4416.871 kb on - strand at 4416.951 kb on + strand at 4417.196 kb on - strand, within DDA3937_RS19425 at 4417.525 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.625 kb on + strand, within DDA3937_RS19425 at 4417.626 kb on - strand, within DDA3937_RS19425 at 4417.667 kb on + strand, within DDA3937_RS19425 at 4417.668 kb on - strand, within DDA3937_RS19425 at 4417.668 kb on - strand at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.694 kb on - strand, within DDA3937_RS19425 at 4417.800 kb on + strand, within DDA3937_RS19425 at 4417.801 kb on - strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.803 kb on - strand, within DDA3937_RS19425 at 4417.828 kb on + strand, within DDA3937_RS19425 at 4417.828 kb on + strand, within DDA3937_RS19425 at 4417.829 kb on - strand, within DDA3937_RS19425 at 4417.908 kb on + strand at 4417.908 kb on + strand at 4417.909 kb on - strand at 4417.909 kb on - strand at 4417.923 kb on + strand at 4417.930 kb on + strand at 4417.931 kb on - strand at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.071 kb on + strand, within DDA3937_RS19430 at 4418.071 kb on + strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.172 kb on + strand at 4418.202 kb on + strand at 4418.223 kb on + strand at 4418.224 kb on - strand at 4418.224 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.234 kb on + strand at 4418.241 kb on + strand at 4418.241 kb on + strand at 4418.248 kb on + strand at 4418.248 kb on + strand at 4418.248 kb on + strand at 4418.249 kb on - strand at 4418.249 kb on - strand at 4418.249 kb on - strand at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.439 kb on + strand at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.440 kb on - strand, within DDA3937_RS19435 at 4418.440 kb on - strand, within DDA3937_RS19435 at 4418.440 kb on - strand at 4418.449 kb on - strand, within DDA3937_RS19435 at 4418.450 kb on + strand, within DDA3937_RS19435 at 4418.553 kb on - strand, within DDA3937_RS19435 at 4418.553 kb on - strand, within DDA3937_RS19435 at 4418.553 kb on - strand at 4418.566 kb on - strand, within DDA3937_RS19435 at 4418.610 kb on + strand, within DDA3937_RS19435 at 4418.610 kb on + strand, within DDA3937_RS19435 at 4418.611 kb on - strand, within DDA3937_RS19435 at 4418.611 kb on - strand, within DDA3937_RS19435 at 4418.629 kb on - strand, within DDA3937_RS19435 at 4418.695 kb on - strand, within DDA3937_RS19435 at 4418.695 kb on - strand, within DDA3937_RS19435 at 4418.877 kb on + strand, within DDA3937_RS19435 at 4418.877 kb on + strand, within DDA3937_RS19435 at 4418.878 kb on - strand at 4418.878 kb on - strand, within DDA3937_RS19435 at 4418.878 kb on - strand, within DDA3937_RS19435
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,416,015 + +1.6 4,416,015 + -0.7 4,416,016 - -0.7 4,416,016 - -2.0 4,416,364 + DDA3937_RS19420 0.23 +0.5 4,416,408 + DDA3937_RS19420 0.30 +0.2 4,416,409 - DDA3937_RS19420 0.30 +1.4 4,416,427 + DDA3937_RS19420 0.33 -0.1 4,416,428 - DDA3937_RS19420 0.33 -0.5 4,416,498 + DDA3937_RS19420 0.45 -0.4 4,416,498 + DDA3937_RS19420 0.45 -0.3 4,416,498 + DDA3937_RS19420 0.45 +0.1 4,416,498 + DDA3937_RS19420 0.45 -0.1 4,416,498 + DDA3937_RS19420 0.45 -0.3 4,416,499 - DDA3937_RS19420 0.45 +0.2 4,416,499 - DDA3937_RS19420 0.45 +1.1 4,416,547 - DDA3937_RS19420 0.53 +0.7 4,416,585 + DDA3937_RS19420 0.59 +0.3 4,416,586 - DDA3937_RS19420 0.59 -0.2 4,416,586 - DDA3937_RS19420 0.59 +0.3 4,416,586 - DDA3937_RS19420 0.59 +0.1 4,416,586 - DDA3937_RS19420 0.59 -0.4 4,416,599 + DDA3937_RS19420 0.61 +0.1 4,416,600 - DDA3937_RS19420 0.62 -0.2 4,416,600 - DDA3937_RS19420 0.62 +0.0 4,416,627 + DDA3937_RS19420 0.66 -0.3 4,416,673 + DDA3937_RS19420 0.74 -1.0 4,416,673 + DDA3937_RS19420 0.74 -0.9 4,416,673 + DDA3937_RS19420 0.74 +0.6 4,416,673 + DDA3937_RS19420 0.74 +0.5 4,416,673 + DDA3937_RS19420 0.74 -1.5 4,416,673 + DDA3937_RS19420 0.74 +0.5 4,416,673 + DDA3937_RS19420 0.74 -0.2 4,416,673 + DDA3937_RS19420 0.74 +2.2 4,416,674 - DDA3937_RS19420 0.74 -0.3 4,416,674 - DDA3937_RS19420 0.74 -0.6 4,416,674 - DDA3937_RS19420 0.74 -0.0 4,416,674 - DDA3937_RS19420 0.74 +2.3 4,416,694 + DDA3937_RS19420 0.77 +0.6 4,416,694 + DDA3937_RS19420 0.77 +0.5 4,416,695 - DDA3937_RS19420 0.77 +0.1 4,416,749 - +0.6 4,416,752 + DDA3937_RS19420 0.87 -0.4 4,416,752 + DDA3937_RS19420 0.87 -0.2 4,416,752 + DDA3937_RS19420 0.87 -0.8 4,416,752 + DDA3937_RS19420 0.87 +0.6 4,416,752 + DDA3937_RS19420 0.87 -0.4 4,416,752 + DDA3937_RS19420 0.87 +0.1 4,416,752 + DDA3937_RS19420 0.87 -0.8 4,416,752 + DDA3937_RS19420 0.87 +0.3 4,416,752 + DDA3937_RS19420 0.87 +0.1 4,416,752 + DDA3937_RS19420 0.87 -1.4 4,416,752 + DDA3937_RS19420 0.87 +0.7 4,416,752 + DDA3937_RS19420 0.87 -0.6 4,416,753 - DDA3937_RS19420 0.87 -1.0 4,416,753 - DDA3937_RS19420 0.87 -0.6 4,416,753 - DDA3937_RS19420 0.87 -0.6 4,416,753 - DDA3937_RS19420 0.87 -0.6 4,416,753 - DDA3937_RS19420 0.87 +0.2 4,416,753 - DDA3937_RS19420 0.87 +0.5 4,416,753 - DDA3937_RS19420 0.87 +0.6 4,416,753 - DDA3937_RS19420 0.87 -1.0 4,416,753 - DDA3937_RS19420 0.87 -0.3 4,416,757 + DDA3937_RS19420 0.87 +0.2 4,416,757 + DDA3937_RS19420 0.87 +0.5 4,416,757 + DDA3937_RS19420 0.87 +0.8 4,416,757 + DDA3937_RS19420 0.87 -0.1 4,416,758 - DDA3937_RS19420 0.88 -0.3 4,416,758 - DDA3937_RS19420 0.88 -0.6 4,416,758 - DDA3937_RS19420 0.88 -0.4 4,416,758 - DDA3937_RS19420 0.88 -0.2 4,416,758 - DDA3937_RS19420 0.88 -0.3 4,416,758 - DDA3937_RS19420 0.88 -0.1 4,416,758 - DDA3937_RS19420 0.88 -0.3 4,416,760 + DDA3937_RS19420 0.88 +0.4 4,416,760 + DDA3937_RS19420 0.88 -1.7 4,416,760 + DDA3937_RS19420 0.88 +0.8 4,416,760 + DDA3937_RS19420 0.88 +1.0 4,416,760 + DDA3937_RS19420 0.88 +0.3 4,416,760 + DDA3937_RS19420 0.88 +1.1 4,416,760 + DDA3937_RS19420 0.88 -0.3 4,416,760 + DDA3937_RS19420 0.88 +2.0 4,416,760 + DDA3937_RS19420 0.88 +1.0 4,416,760 + DDA3937_RS19420 0.88 +0.2 4,416,761 - DDA3937_RS19420 0.88 -0.6 4,416,761 - DDA3937_RS19420 0.88 -0.9 4,416,761 - DDA3937_RS19420 0.88 +0.1 4,416,761 - DDA3937_RS19420 0.88 +1.2 4,416,763 + DDA3937_RS19420 0.88 +0.4 4,416,779 - -0.4 4,416,870 + +0.0 4,416,870 + -0.0 4,416,870 + +0.1 4,416,870 + +1.6 4,416,871 - -0.3 4,416,871 - -0.1 4,416,871 - -1.6 4,416,951 + +0.6 4,417,196 - DDA3937_RS19425 0.24 +1.5 4,417,525 + DDA3937_RS19425 0.57 -0.1 4,417,534 + DDA3937_RS19425 0.58 -0.2 4,417,534 + DDA3937_RS19425 0.58 +0.8 4,417,534 + DDA3937_RS19425 0.58 +0.1 4,417,534 + DDA3937_RS19425 0.58 +0.0 4,417,535 - DDA3937_RS19425 0.58 +0.8 4,417,535 - DDA3937_RS19425 0.58 -0.6 4,417,535 - DDA3937_RS19425 0.58 -0.5 4,417,625 + DDA3937_RS19425 0.67 +0.7 4,417,626 - DDA3937_RS19425 0.67 +0.1 4,417,667 + DDA3937_RS19425 0.72 +0.4 4,417,668 - DDA3937_RS19425 0.72 -1.0 4,417,668 - -1.0 4,417,693 + DDA3937_RS19425 0.74 +0.1 4,417,693 + DDA3937_RS19425 0.74 +0.5 4,417,693 + DDA3937_RS19425 0.74 +0.2 4,417,694 - DDA3937_RS19425 0.74 -0.5 4,417,800 + DDA3937_RS19425 0.85 +1.8 4,417,801 - DDA3937_RS19425 0.85 -2.0 4,417,802 + DDA3937_RS19425 0.85 +0.1 4,417,802 + DDA3937_RS19425 0.85 +0.0 4,417,802 + DDA3937_RS19425 0.85 -1.4 4,417,802 + DDA3937_RS19425 0.85 -0.4 4,417,802 + DDA3937_RS19425 0.85 -0.6 4,417,803 - DDA3937_RS19425 0.85 -0.9 4,417,828 + DDA3937_RS19425 0.88 +0.6 4,417,828 + DDA3937_RS19425 0.88 +0.1 4,417,829 - DDA3937_RS19425 0.88 -0.2 4,417,908 + +0.7 4,417,908 + -0.6 4,417,909 - +0.0 4,417,909 - +0.0 4,417,923 + +1.2 4,417,930 + -0.5 4,417,931 - +0.6 4,418,069 + DDA3937_RS19430 0.51 -0.1 4,418,069 + DDA3937_RS19430 0.51 +1.9 4,418,069 + DDA3937_RS19430 0.51 -0.1 4,418,070 - DDA3937_RS19430 0.52 -0.4 4,418,070 - DDA3937_RS19430 0.52 -0.0 4,418,070 - DDA3937_RS19430 0.52 -0.7 4,418,071 + DDA3937_RS19430 0.52 +0.2 4,418,071 + DDA3937_RS19430 0.52 -0.7 4,418,072 - DDA3937_RS19430 0.53 -0.1 4,418,072 - DDA3937_RS19430 0.53 +0.9 4,418,072 - DDA3937_RS19430 0.53 -0.4 4,418,072 - DDA3937_RS19430 0.53 -0.5 4,418,072 - DDA3937_RS19430 0.53 -0.8 4,418,072 - DDA3937_RS19430 0.53 -1.0 4,418,072 - DDA3937_RS19430 0.53 +1.2 4,418,072 - DDA3937_RS19430 0.53 +0.0 4,418,072 - DDA3937_RS19430 0.53 -0.8 4,418,072 - DDA3937_RS19430 0.53 -0.4 4,418,135 + DDA3937_RS19430 0.79 +0.4 4,418,135 + DDA3937_RS19430 0.79 -0.6 4,418,135 + DDA3937_RS19430 0.79 +0.9 4,418,135 + DDA3937_RS19430 0.79 -0.7 4,418,135 + DDA3937_RS19430 0.79 -0.7 4,418,136 - DDA3937_RS19430 0.80 +0.2 4,418,136 - DDA3937_RS19430 0.80 +0.7 4,418,136 - DDA3937_RS19430 0.80 -0.1 4,418,172 + +0.3 4,418,202 + +0.2 4,418,223 + +0.4 4,418,224 - -0.2 4,418,224 - +1.3 4,418,226 - -2.4 4,418,226 - -0.5 4,418,226 - +0.0 4,418,226 - +0.3 4,418,226 - +1.2 4,418,234 + -0.2 4,418,241 + +0.3 4,418,241 + -0.3 4,418,248 + +2.3 4,418,248 + +0.9 4,418,248 + +0.3 4,418,249 - -1.2 4,418,249 - -0.5 4,418,249 - +0.8 4,418,439 + DDA3937_RS19435 0.15 -0.8 4,418,439 + DDA3937_RS19435 0.15 -1.9 4,418,439 + -1.7 4,418,439 + DDA3937_RS19435 0.15 -1.4 4,418,440 - DDA3937_RS19435 0.15 -0.7 4,418,440 - DDA3937_RS19435 0.15 +0.0 4,418,440 - +1.8 4,418,449 - DDA3937_RS19435 0.16 -0.7 4,418,450 + DDA3937_RS19435 0.16 +0.6 4,418,553 - DDA3937_RS19435 0.28 -2.4 4,418,553 - DDA3937_RS19435 0.28 -0.8 4,418,553 - +0.6 4,418,566 - DDA3937_RS19435 0.29 +0.6 4,418,610 + DDA3937_RS19435 0.34 -2.0 4,418,610 + DDA3937_RS19435 0.34 -0.4 4,418,611 - DDA3937_RS19435 0.35 -1.1 4,418,611 - DDA3937_RS19435 0.35 -0.3 4,418,629 - DDA3937_RS19435 0.37 -1.6 4,418,695 - DDA3937_RS19435 0.44 +0.4 4,418,695 - DDA3937_RS19435 0.44 -1.0 4,418,877 + DDA3937_RS19435 0.65 -1.0 4,418,877 + DDA3937_RS19435 0.65 -2.2 4,418,878 - -0.4 4,418,878 - DDA3937_RS19435 0.65 -0.1 4,418,878 - DDA3937_RS19435 0.65 -2.0
Or see this region's nucleotide sequence