Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS17875 and DDA3937_RS17880 are separated by 283 nucleotides DDA3937_RS17880 and DDA3937_RS17885 are separated by 101 nucleotides
DDA3937_RS17875: DDA3937_RS17875 - MCP four helix bundle domain-containing protein, at 4,074,625 to 4,076,283
_RS17875
DDA3937_RS17880: DDA3937_RS17880 - YacL family protein, at 4,076,567 to 4,076,929
_RS17880
DDA3937_RS17885: DDA3937_RS17885 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 4,077,031 to 4,079,628
_RS17885
Position (kb)
4076
4077 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4075.603 kb on + strand, within DDA3937_RS17875 at 4075.604 kb on - strand, within DDA3937_RS17875 at 4075.604 kb on - strand, within DDA3937_RS17875 at 4075.604 kb on - strand, within DDA3937_RS17875 at 4075.604 kb on - strand, within DDA3937_RS17875 at 4075.679 kb on - strand, within DDA3937_RS17875 at 4075.680 kb on + strand, within DDA3937_RS17875 at 4075.681 kb on - strand, within DDA3937_RS17875 at 4075.807 kb on + strand, within DDA3937_RS17875 at 4075.936 kb on + strand, within DDA3937_RS17875 at 4076.154 kb on + strand at 4076.169 kb on + strand at 4076.170 kb on - strand at 4076.172 kb on + strand at 4076.178 kb on + strand at 4076.222 kb on - strand at 4076.230 kb on - strand at 4076.402 kb on + strand at 4076.425 kb on - strand at 4076.426 kb on + strand at 4076.427 kb on - strand at 4076.467 kb on + strand at 4076.576 kb on - strand at 4076.648 kb on + strand, within DDA3937_RS17880 at 4076.653 kb on - strand, within DDA3937_RS17880 at 4076.655 kb on + strand, within DDA3937_RS17880 at 4076.742 kb on + strand, within DDA3937_RS17880 at 4076.742 kb on + strand, within DDA3937_RS17880 at 4076.833 kb on + strand, within DDA3937_RS17880 at 4076.834 kb on - strand, within DDA3937_RS17880 at 4076.859 kb on - strand, within DDA3937_RS17880 at 4076.922 kb on + strand at 4076.923 kb on - strand at 4076.974 kb on - strand at 4077.022 kb on + strand at 4077.022 kb on + strand at 4077.022 kb on + strand at 4077.022 kb on + strand at 4077.022 kb on + strand at 4077.023 kb on - strand at 4077.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,075,603 + DDA3937_RS17875 0.59 +0.5 4,075,604 - DDA3937_RS17875 0.59 -3.2 4,075,604 - DDA3937_RS17875 0.59 -0.1 4,075,604 - DDA3937_RS17875 0.59 +1.0 4,075,604 - DDA3937_RS17875 0.59 -0.2 4,075,679 - DDA3937_RS17875 0.64 +1.6 4,075,680 + DDA3937_RS17875 0.64 -0.1 4,075,681 - DDA3937_RS17875 0.64 -0.7 4,075,807 + DDA3937_RS17875 0.71 +0.2 4,075,936 + DDA3937_RS17875 0.79 +0.1 4,076,154 + +0.1 4,076,169 + +0.2 4,076,170 - -0.3 4,076,172 + -0.3 4,076,178 + -1.1 4,076,222 - +0.5 4,076,230 - +0.1 4,076,402 + +0.0 4,076,425 - -0.7 4,076,426 + +0.1 4,076,427 - -0.1 4,076,467 + -0.5 4,076,576 - -0.3 4,076,648 + DDA3937_RS17880 0.22 -1.7 4,076,653 - DDA3937_RS17880 0.24 -0.9 4,076,655 + DDA3937_RS17880 0.24 +0.3 4,076,742 + DDA3937_RS17880 0.48 -0.9 4,076,742 + DDA3937_RS17880 0.48 -0.5 4,076,833 + DDA3937_RS17880 0.73 -0.5 4,076,834 - DDA3937_RS17880 0.74 -0.3 4,076,859 - DDA3937_RS17880 0.80 -0.2 4,076,922 + -0.3 4,076,923 - -1.0 4,076,974 - -1.1 4,077,022 + +0.1 4,077,022 + +2.3 4,077,022 + -0.8 4,077,022 + -1.5 4,077,022 + +0.0 4,077,023 - +0.5 4,077,074 + -1.1
Or see this region's nucleotide sequence