Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16705

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,799,745	+		DDA3937_RS16700	0.42	-0.1
3,799,745	+		DDA3937_RS16700	0.42	+0.6
3,799,745	+		DDA3937_RS16700	0.42	+0.5
3,799,745	+		DDA3937_RS16700	0.42	+0.5
3,799,745	+		DDA3937_RS16700	0.42	-0.8
3,799,745	+		DDA3937_RS16700	0.42	+0.9
3,799,745	+		DDA3937_RS16700	0.42	+0.4
3,799,745	+		DDA3937_RS16700	0.42	-0.5
3,799,746	-				-0.4
3,799,746	-		DDA3937_RS16700	0.42	-0.5
3,799,746	-		DDA3937_RS16700	0.42	-0.2
3,799,747	+		DDA3937_RS16700	0.42	+0.4
3,799,748	-		DDA3937_RS16700	0.42	-0.7
3,799,944	-		DDA3937_RS16700	0.69	-0.2
3,800,000	+		DDA3937_RS16700	0.76	+0.6
3,800,000	+		DDA3937_RS16700	0.76	+2.3
3,800,000	+		DDA3937_RS16700	0.76	-0.7
3,800,000	+		DDA3937_RS16700	0.76	-0.8
3,800,001	-		DDA3937_RS16700	0.76	+0.1
3,800,001	-		DDA3937_RS16700	0.76	+0.0
3,800,001	-		DDA3937_RS16700	0.76	-0.1
3,800,001	-		DDA3937_RS16700	0.76	-0.1
3,800,163	+				-0.8
3,800,163	+				+0.5
3,800,163	+				-0.4
3,800,163	+				+0.9
3,800,163	+				+0.6
3,800,164	-				-0.3
3,800,164	-				-0.2
3,800,164	-				-2.5
3,800,164	-				-1.0
3,800,164	-				+0.0
3,800,164	-				-1.4
3,800,167	+				-0.2
3,800,297	+				+0.3
3,800,297	+				+0.1
3,800,297	+				+0.6
3,800,371	+				-1.2
3,800,432	-				+2.3
3,800,432	-				+0.4
3,800,432	-				-0.7
3,800,462	+				-0.7
3,800,462	+				+1.0
3,800,462	+				+0.3
3,800,462	+				+0.6
3,800,462	+				-2.0
3,800,462	+				-0.4
3,800,463	-				-0.3
3,800,463	-				-0.3
3,800,463	-				-0.1
3,800,463	-				-0.1
3,800,463	-				-0.3
3,800,463	-				-0.3
3,800,463	-				+0.1
3,800,463	-				+0.3
3,800,463	-				+0.3
3,800,463	-				+0.0
3,800,480	-		DDA3937_RS16705	0.10	-1.8
3,800,609	+		DDA3937_RS16705	0.19	-0.5
3,800,614	+		DDA3937_RS16705	0.19	-0.2
3,800,615	-		DDA3937_RS16705	0.19	-0.7
3,800,713	+		DDA3937_RS16705	0.26	-0.0
3,800,713	+		DDA3937_RS16705	0.26	+0.7
3,800,713	+		DDA3937_RS16705	0.26	-1.1
3,800,713	+		DDA3937_RS16705	0.26	+0.1
3,800,713	+		DDA3937_RS16705	0.26	-0.1
3,800,713	+		DDA3937_RS16705	0.26	-0.8
3,800,714	-		DDA3937_RS16705	0.26	-0.8
3,800,714	-		DDA3937_RS16705	0.26	+0.3
3,800,714	-		DDA3937_RS16705	0.26	-0.6
3,800,714	-		DDA3937_RS16705	0.26	-1.5
3,800,886	+		DDA3937_RS16705	0.38	-1.0
3,800,886	+		DDA3937_RS16705	0.38	-0.1
3,800,886	+		DDA3937_RS16705	0.38	-0.0
3,800,887	-				+0.8
3,800,887	-		DDA3937_RS16705	0.38	-0.5
3,800,911	+		DDA3937_RS16705	0.39	-1.0
3,800,945	+		DDA3937_RS16705	0.41	+0.0
3,800,945	+		DDA3937_RS16705	0.41	-1.1
3,800,946	-		DDA3937_RS16705	0.42	-1.0
3,800,946	-				-0.7
3,800,946	-		DDA3937_RS16705	0.42	-0.6
3,800,946	-		DDA3937_RS16705	0.42	-1.2
3,800,967	+		DDA3937_RS16705	0.43	+0.2
3,801,052	+		DDA3937_RS16705	0.49	-0.0
3,801,052	+		DDA3937_RS16705	0.49	-1.1
3,801,052	+		DDA3937_RS16705	0.49	-0.5
3,801,099	+		DDA3937_RS16705	0.52	-0.4
3,801,100	-		DDA3937_RS16705	0.52	-2.7
3,801,321	+		DDA3937_RS16705	0.67	+0.7
3,801,321	+		DDA3937_RS16705	0.67	+0.3
3,801,321	+		DDA3937_RS16705	0.67	-0.8
3,801,322	-		DDA3937_RS16705	0.67	-1.5
3,801,524	-		DDA3937_RS16705	0.80	-0.0
3,801,587	-		DDA3937_RS16705	0.85	-0.8
3,801,656	+		DDA3937_RS16705	0.89	-0.1
3,801,656	+		DDA3937_RS16705	0.89	-1.2
3,801,657	-		DDA3937_RS16705	0.89	-0.9
3,801,657	-		DDA3937_RS16705	0.89	+1.3
3,801,659	+		DDA3937_RS16705	0.90	-1.0
3,801,659	+		DDA3937_RS16705	0.90	-0.2
3,801,659	+		DDA3937_RS16705	0.90	+0.9
3,801,659	+		DDA3937_RS16705	0.90	-1.1
3,801,660	-		DDA3937_RS16705	0.90	-0.5
3,801,660	-		DDA3937_RS16705	0.90	+0.5
3,801,660	-		DDA3937_RS16705	0.90	+0.5
3,801,660	-		DDA3937_RS16705	0.90	+0.8
3,801,660	-		DDA3937_RS16705	0.90	-0.3
3,801,733	+				+0.3
3,801,739	+				-0.1
3,801,811	+				-0.5
3,801,855	+				-1.8
3,801,855	+				-0.6
3,801,855	+				-1.8
3,801,856	-				+0.2
3,801,856	-				-1.7
3,801,856	-				-0.4
3,801,859	+				+0.8
3,801,860	-				-1.0
3,801,860	-				+0.6
3,801,860	-				-0.0
3,801,860	-				+0.3
3,802,001	-				-0.4
3,802,068	-				+0.8
3,802,068	-				+0.5
3,802,068	-				-0.2
3,802,068	-				-0.4
3,802,068	-				+1.7
3,802,069	+				-0.7
3,802,069	+				-0.8
3,802,087	+				+0.2
3,802,088	-				-0.1
3,802,088	-				+1.0
3,802,088	-				+0.2
3,802,106	+				-1.6
3,802,106	+				+1.0
3,802,106	+				+0.2
3,802,106	+				-0.1
3,802,106	+				+0.3
3,802,107	-				+0.4
3,802,107	-				+1.5
3,802,107	-				-0.5
3,802,108	+				-0.8
3,802,224	-				-0.7
3,802,376	-		DDA3937_RS16710	0.18	-1.0
3,802,379	+		DDA3937_RS16710	0.18	-1.1
3,802,379	+		DDA3937_RS16710	0.18	+2.3
3,802,380	-		DDA3937_RS16710	0.18	+0.0
3,802,380	-		DDA3937_RS16710	0.18	-0.3
3,802,380	-		DDA3937_RS16710	0.18	-1.1
3,802,380	-		DDA3937_RS16710	0.18	-2.8
3,802,519	+		DDA3937_RS16710	0.26	+1.0
3,802,529	+		DDA3937_RS16710	0.26	-0.3
3,802,530	-		DDA3937_RS16710	0.26	+0.5
3,802,530	-		DDA3937_RS16710	0.26	+0.9
3,802,530	-		DDA3937_RS16710	0.26	-0.5