Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16600

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,779,719	+		DDA3937_RS16595	0.70	-2.4
3,779,851	+		DDA3937_RS16595	0.76	+0.5
3,779,852	-				-0.1
3,779,852	-		DDA3937_RS16595	0.76	+0.8
3,779,980	-		DDA3937_RS16595	0.81	+0.5
3,780,300	+				-0.8
3,780,448	+				+0.0
3,780,448	+				+0.4
3,780,449	-				-1.5
3,780,449	-				-0.3
3,780,506	-				+0.1
3,780,506	-				-2.0
3,780,671	+		DDA3937_RS16600	0.14	-0.6
3,780,672	-		DDA3937_RS16600	0.14	+1.1
3,780,672	-		DDA3937_RS16600	0.14	-0.8
3,780,698	-		DDA3937_RS16600	0.16	-0.7
3,780,742	+		DDA3937_RS16600	0.20	-0.3
3,780,743	-		DDA3937_RS16600	0.20	-0.3
3,780,743	-		DDA3937_RS16600	0.20	+0.7
3,780,743	-		DDA3937_RS16600	0.20	-0.7
3,780,812	+		DDA3937_RS16600	0.26	-1.0
3,780,813	-		DDA3937_RS16600	0.26	+0.3
3,780,880	-		DDA3937_RS16600	0.31	+0.1
3,780,898	+		DDA3937_RS16600	0.33	+0.2
3,780,899	-		DDA3937_RS16600	0.33	-0.7
3,781,160	+		DDA3937_RS16600	0.55	-0.5
3,781,162	+		DDA3937_RS16600	0.55	-0.2
3,781,162	+		DDA3937_RS16600	0.55	-1.2
3,781,162	+				+0.3
3,781,162	+		DDA3937_RS16600	0.55	-0.1
3,781,163	-		DDA3937_RS16600	0.55	-1.1
3,781,163	-		DDA3937_RS16600	0.55	+0.1
3,781,163	-		DDA3937_RS16600	0.55	-2.2
3,781,214	+		DDA3937_RS16600	0.59	-0.3
3,781,215	-		DDA3937_RS16600	0.59	-0.4
3,781,256	-		DDA3937_RS16600	0.63	+0.9
3,781,291	+		DDA3937_RS16600	0.65	-1.2
3,781,291	+		DDA3937_RS16600	0.65	-0.4
3,781,291	+		DDA3937_RS16600	0.65	-0.8
3,781,291	+		DDA3937_RS16600	0.65	-0.4
3,781,424	+		DDA3937_RS16600	0.76	-1.2
3,781,438	+		DDA3937_RS16600	0.78	-0.4
3,781,439	-		DDA3937_RS16600	0.78	-0.7
3,781,439	-		DDA3937_RS16600	0.78	+0.3
3,781,522	+		DDA3937_RS16600	0.85	-1.0
3,781,522	+		DDA3937_RS16600	0.85	-0.5
3,781,663	+				+0.8
3,781,664	-				-2.0
3,781,697	-				+0.0
3,781,697	-				-0.1
3,781,720	+				+0.2
3,781,720	+				-0.4
3,781,721	-				+0.1
3,781,721	-				-2.0
3,781,724	+				+0.5
3,781,724	+				+0.2
3,781,724	+				+0.0
3,781,724	+				-0.8
3,781,724	+				-0.8
3,781,724	+				-0.3
3,781,725	-				+0.2
3,781,725	-				+0.7
3,781,725	-				+0.7
3,781,725	-				+0.7
3,781,725	-				+1.3
3,781,725	-				+0.6
3,781,725	-				-0.1
3,781,725	-				-0.4
3,781,725	-				+0.0
3,781,725	-				-2.5
3,781,725	-				+0.6
3,781,728	+				+0.9
3,781,728	+				+0.4
3,781,728	+				+0.4
3,781,728	+				+0.9
3,781,728	+				-0.3
3,781,728	+				+0.4
3,781,728	+				+0.1
3,781,729	-				-3.1
3,781,729	-				-0.9
3,781,729	-				-0.6
3,781,729	-				-0.0
3,781,729	-				+1.1
3,781,729	-				-0.7
3,781,729	-				-1.5
3,781,729	-				-0.1
3,781,729	-				+1.7
3,781,729	-				-1.1
3,781,729	-				+0.3
3,781,760	+				+0.0
3,781,760	+				-0.2
3,781,761	-				-0.2
3,781,771	+				+2.0
3,781,772	-				-1.2
3,781,818	+				+0.3
3,781,826	+				-1.8
3,781,826	+				+0.3
3,781,827	-				-0.2
3,781,827	-				-0.6
3,781,827	-				+0.3
3,781,827	-				+0.1
3,781,874	+				-1.5
3,781,874	+				-0.5
3,781,874	+				-1.2
3,781,875	-				-0.6
3,781,875	-				-0.5
3,781,875	-				-0.8
3,781,875	-				+0.3
3,781,937	+				-0.0
3,781,937	+				-0.7
3,781,938	-				-0.7
3,781,970	+				-0.1
3,781,970	+				-0.6
3,782,018	-				+0.4
3,782,347	+		DDA3937_RS16605	0.36	+0.2
3,782,347	+		DDA3937_RS16605	0.36	-1.0
3,782,348	-		DDA3937_RS16605	0.36	+0.6
3,782,348	-		DDA3937_RS16605	0.36	-0.3
3,782,365	+		DDA3937_RS16605	0.37	+0.3
3,782,422	+		DDA3937_RS16605	0.43	+0.6
3,782,422	+		DDA3937_RS16605	0.43	-0.0
3,782,422	+		DDA3937_RS16605	0.43	-1.7
3,782,423	-		DDA3937_RS16605	0.43	+0.8
3,782,705	+		DDA3937_RS16605	0.70	-0.8
3,782,706	-		DDA3937_RS16605	0.70	+0.8
3,782,706	-		DDA3937_RS16605	0.70	-1.2