Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS15810 and DDA3937_RS15815 are separated by 44 nucleotides DDA3937_RS15815 and DDA3937_RS15820 are separated by 57 nucleotides DDA3937_RS15820 and DDA3937_RS15825 are separated by 7 nucleotides DDA3937_RS15825 and DDA3937_RS15830 are separated by 316 nucleotides DDA3937_RS15830 and DDA3937_RS15835 are separated by 48 nucleotides
DDA3937_RS15810: DDA3937_RS15810 - tRNA-Val, at 3,619,679 to 3,619,754
_RS15810
DDA3937_RS15815: DDA3937_RS15815 - tRNA-Val, at 3,619,799 to 3,619,874
_RS15815
DDA3937_RS15820: DDA3937_RS15820 - tRNA-Val, at 3,619,932 to 3,620,007
_RS15820
DDA3937_RS15825: DDA3937_RS15825 - tRNA-Lys, at 3,620,015 to 3,620,090
_RS15825
DDA3937_RS15830: DDA3937_RS15830 - DoxX family protein, at 3,620,407 to 3,620,841
_RS15830
DDA3937_RS15835: DDA3937_RS15835 - sulfate ABC transporter ATP-binding protein, at 3,620,890 to 3,621,882
_RS15835
Position (kb)
3620
3621 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3619.488 kb on - strand at 3619.488 kb on - strand at 3619.536 kb on + strand at 3619.536 kb on + strand at 3619.537 kb on - strand at 3619.577 kb on + strand at 3619.578 kb on - strand at 3619.578 kb on - strand at 3619.578 kb on - strand at 3619.581 kb on + strand at 3619.582 kb on - strand at 3619.782 kb on + strand at 3619.782 kb on + strand at 3619.782 kb on + strand at 3619.832 kb on + strand, within DDA3937_RS15815 at 3619.832 kb on + strand, within DDA3937_RS15815 at 3619.881 kb on + strand at 3619.909 kb on + strand at 3619.909 kb on + strand at 3619.923 kb on + strand at 3619.923 kb on + strand at 3619.923 kb on + strand at 3619.923 kb on + strand at 3620.093 kb on + strand at 3620.128 kb on + strand at 3620.128 kb on + strand at 3620.151 kb on + strand at 3620.183 kb on + strand at 3620.190 kb on + strand at 3620.190 kb on + strand at 3620.190 kb on + strand at 3620.191 kb on - strand at 3620.191 kb on - strand at 3620.191 kb on - strand at 3620.191 kb on - strand at 3620.191 kb on - strand at 3620.245 kb on + strand at 3620.245 kb on + strand at 3620.246 kb on - strand at 3620.253 kb on + strand at 3620.254 kb on - strand at 3620.254 kb on - strand at 3620.263 kb on + strand at 3620.263 kb on + strand at 3620.264 kb on - strand at 3620.317 kb on + strand at 3620.368 kb on + strand at 3620.380 kb on - strand at 3620.386 kb on + strand at 3620.386 kb on + strand at 3620.386 kb on + strand at 3620.393 kb on - strand at 3620.393 kb on - strand at 3620.393 kb on - strand at 3620.394 kb on + strand at 3620.394 kb on + strand at 3620.394 kb on + strand at 3620.395 kb on - strand at 3620.411 kb on + strand at 3620.411 kb on + strand at 3620.411 kb on + strand at 3620.412 kb on - strand at 3620.412 kb on - strand at 3620.412 kb on - strand at 3620.415 kb on + strand at 3620.415 kb on + strand at 3620.416 kb on - strand at 3620.581 kb on - strand, within DDA3937_RS15830 at 3620.596 kb on + strand, within DDA3937_RS15830 at 3620.596 kb on + strand, within DDA3937_RS15830 at 3620.596 kb on + strand, within DDA3937_RS15830 at 3620.596 kb on + strand, within DDA3937_RS15830 at 3620.596 kb on + strand, within DDA3937_RS15830 at 3620.597 kb on - strand, within DDA3937_RS15830 at 3620.597 kb on - strand, within DDA3937_RS15830 at 3620.597 kb on - strand, within DDA3937_RS15830 at 3620.597 kb on - strand, within DDA3937_RS15830 at 3620.597 kb on - strand, within DDA3937_RS15830 at 3620.597 kb on - strand, within DDA3937_RS15830 at 3620.629 kb on - strand, within DDA3937_RS15830 at 3620.642 kb on + strand, within DDA3937_RS15830 at 3620.643 kb on - strand, within DDA3937_RS15830 at 3620.649 kb on + strand, within DDA3937_RS15830 at 3620.663 kb on + strand, within DDA3937_RS15830 at 3620.664 kb on - strand, within DDA3937_RS15830 at 3620.673 kb on + strand, within DDA3937_RS15830 at 3620.673 kb on + strand, within DDA3937_RS15830 at 3620.673 kb on + strand, within DDA3937_RS15830 at 3620.674 kb on - strand, within DDA3937_RS15830 at 3620.714 kb on + strand, within DDA3937_RS15830 at 3620.715 kb on - strand, within DDA3937_RS15830 at 3620.764 kb on + strand, within DDA3937_RS15830 at 3620.764 kb on + strand, within DDA3937_RS15830 at 3620.764 kb on + strand, within DDA3937_RS15830 at 3620.765 kb on - strand, within DDA3937_RS15830 at 3620.765 kb on - strand, within DDA3937_RS15830 at 3620.765 kb on - strand, within DDA3937_RS15830 at 3620.765 kb on - strand, within DDA3937_RS15830 at 3620.809 kb on + strand at 3620.840 kb on - strand at 3620.840 kb on - strand at 3620.850 kb on + strand at 3620.911 kb on - strand at 3620.911 kb on - strand at 3620.912 kb on + strand at 3620.912 kb on + strand at 3621.129 kb on + strand, within DDA3937_RS15835 at 3621.130 kb on - strand, within DDA3937_RS15835 at 3621.130 kb on - strand, within DDA3937_RS15835 at 3621.130 kb on - strand, within DDA3937_RS15835 at 3621.130 kb on - strand, within DDA3937_RS15835 at 3621.130 kb on - strand, within DDA3937_RS15835 at 3621.130 kb on - strand, within DDA3937_RS15835 at 3621.181 kb on - strand, within DDA3937_RS15835 at 3621.182 kb on + strand, within DDA3937_RS15835 at 3621.183 kb on - strand, within DDA3937_RS15835 at 3621.183 kb on - strand, within DDA3937_RS15835 at 3621.183 kb on - strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.209 kb on + strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.210 kb on - strand, within DDA3937_RS15835 at 3621.259 kb on + strand, within DDA3937_RS15835 at 3621.260 kb on - strand, within DDA3937_RS15835 at 3621.325 kb on - strand, within DDA3937_RS15835 at 3621.431 kb on - strand, within DDA3937_RS15835 at 3621.431 kb on - strand, within DDA3937_RS15835 at 3621.574 kb on - strand, within DDA3937_RS15835 at 3621.574 kb on - strand, within DDA3937_RS15835 at 3621.618 kb on + strand, within DDA3937_RS15835 at 3621.619 kb on - strand, within DDA3937_RS15835 at 3621.635 kb on + strand, within DDA3937_RS15835 at 3621.635 kb on + strand, within DDA3937_RS15835 at 3621.636 kb on - strand, within DDA3937_RS15835 at 3621.709 kb on - strand, within DDA3937_RS15835
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,619,488 - -0.3 3,619,488 - -1.6 3,619,536 + +0.1 3,619,536 + -0.9 3,619,537 - -0.3 3,619,577 + -0.2 3,619,578 - -0.1 3,619,578 - +0.5 3,619,578 - -2.7 3,619,581 + -0.1 3,619,582 - +0.3 3,619,782 + -0.9 3,619,782 + -1.0 3,619,782 + +0.3 3,619,832 + DDA3937_RS15815 0.43 -0.3 3,619,832 + DDA3937_RS15815 0.43 -0.1 3,619,881 + +0.7 3,619,909 + +0.3 3,619,909 + +0.9 3,619,923 + -0.7 3,619,923 + -0.5 3,619,923 + -0.7 3,619,923 + +0.3 3,620,093 + -0.3 3,620,128 + +0.9 3,620,128 + +0.3 3,620,151 + -0.0 3,620,183 + +0.9 3,620,190 + -0.1 3,620,190 + -0.9 3,620,190 + +0.7 3,620,191 - -0.4 3,620,191 - -1.3 3,620,191 - +0.3 3,620,191 - -0.3 3,620,191 - -0.6 3,620,245 + +1.0 3,620,245 + -0.1 3,620,246 - +0.8 3,620,253 + -0.3 3,620,254 - +1.9 3,620,254 - +0.1 3,620,263 + +0.0 3,620,263 + +0.4 3,620,264 - -0.5 3,620,317 + -0.9 3,620,368 + -0.6 3,620,380 - -0.9 3,620,386 + -0.3 3,620,386 + -1.3 3,620,386 + -0.5 3,620,393 - -0.6 3,620,393 - -0.3 3,620,393 - -0.7 3,620,394 + -0.5 3,620,394 + -1.8 3,620,394 + -0.9 3,620,395 - -0.4 3,620,411 + +0.1 3,620,411 + -0.1 3,620,411 + -1.7 3,620,412 - +0.6 3,620,412 - -0.6 3,620,412 - -0.7 3,620,415 + -0.2 3,620,415 + +1.1 3,620,416 - -0.6 3,620,581 - DDA3937_RS15830 0.40 +0.0 3,620,596 + DDA3937_RS15830 0.43 -1.1 3,620,596 + DDA3937_RS15830 0.43 +0.2 3,620,596 + DDA3937_RS15830 0.43 +0.5 3,620,596 + DDA3937_RS15830 0.43 -0.9 3,620,596 + DDA3937_RS15830 0.43 -0.0 3,620,597 - DDA3937_RS15830 0.44 +0.2 3,620,597 - DDA3937_RS15830 0.44 -0.2 3,620,597 - DDA3937_RS15830 0.44 +0.3 3,620,597 - DDA3937_RS15830 0.44 -0.1 3,620,597 - DDA3937_RS15830 0.44 -0.4 3,620,597 - DDA3937_RS15830 0.44 +0.6 3,620,629 - DDA3937_RS15830 0.51 -0.1 3,620,642 + DDA3937_RS15830 0.54 -0.8 3,620,643 - DDA3937_RS15830 0.54 -0.4 3,620,649 + DDA3937_RS15830 0.56 +0.3 3,620,663 + DDA3937_RS15830 0.59 -0.4 3,620,664 - DDA3937_RS15830 0.59 -1.2 3,620,673 + DDA3937_RS15830 0.61 +0.1 3,620,673 + DDA3937_RS15830 0.61 +0.3 3,620,673 + DDA3937_RS15830 0.61 +0.1 3,620,674 - DDA3937_RS15830 0.61 +0.0 3,620,714 + DDA3937_RS15830 0.71 +0.0 3,620,715 - DDA3937_RS15830 0.71 +0.1 3,620,764 + DDA3937_RS15830 0.82 +0.4 3,620,764 + DDA3937_RS15830 0.82 -0.2 3,620,764 + DDA3937_RS15830 0.82 -0.6 3,620,765 - DDA3937_RS15830 0.82 +0.7 3,620,765 - DDA3937_RS15830 0.82 +0.2 3,620,765 - DDA3937_RS15830 0.82 -0.5 3,620,765 - DDA3937_RS15830 0.82 -0.0 3,620,809 + +0.5 3,620,840 - -0.1 3,620,840 - -0.3 3,620,850 + +0.2 3,620,911 - +0.5 3,620,911 - +0.3 3,620,912 + -1.4 3,620,912 + -0.9 3,621,129 + DDA3937_RS15835 0.24 -1.3 3,621,130 - DDA3937_RS15835 0.24 -0.0 3,621,130 - DDA3937_RS15835 0.24 +0.6 3,621,130 - DDA3937_RS15835 0.24 -0.5 3,621,130 - DDA3937_RS15835 0.24 -0.4 3,621,130 - DDA3937_RS15835 0.24 +1.4 3,621,130 - DDA3937_RS15835 0.24 +0.0 3,621,181 - DDA3937_RS15835 0.29 -0.5 3,621,182 + DDA3937_RS15835 0.29 -0.6 3,621,183 - DDA3937_RS15835 0.30 +0.4 3,621,183 - DDA3937_RS15835 0.30 +0.5 3,621,183 - DDA3937_RS15835 0.30 -0.7 3,621,209 + DDA3937_RS15835 0.32 -0.5 3,621,209 + DDA3937_RS15835 0.32 -0.1 3,621,209 + DDA3937_RS15835 0.32 -0.7 3,621,209 + DDA3937_RS15835 0.32 -0.4 3,621,209 + DDA3937_RS15835 0.32 -1.9 3,621,209 + DDA3937_RS15835 0.32 -1.5 3,621,209 + DDA3937_RS15835 0.32 +0.1 3,621,209 + DDA3937_RS15835 0.32 -0.1 3,621,209 + DDA3937_RS15835 0.32 +0.3 3,621,210 - DDA3937_RS15835 0.32 +1.3 3,621,210 - DDA3937_RS15835 0.32 +0.5 3,621,210 - DDA3937_RS15835 0.32 +0.4 3,621,210 - DDA3937_RS15835 0.32 +0.5 3,621,210 - DDA3937_RS15835 0.32 -1.3 3,621,210 - DDA3937_RS15835 0.32 +0.2 3,621,210 - DDA3937_RS15835 0.32 -0.3 3,621,210 - DDA3937_RS15835 0.32 +0.9 3,621,210 - DDA3937_RS15835 0.32 -0.3 3,621,210 - DDA3937_RS15835 0.32 +0.2 3,621,259 + DDA3937_RS15835 0.37 +0.9 3,621,260 - DDA3937_RS15835 0.37 +0.3 3,621,325 - DDA3937_RS15835 0.44 -0.0 3,621,431 - DDA3937_RS15835 0.54 +1.0 3,621,431 - DDA3937_RS15835 0.54 +0.6 3,621,574 - DDA3937_RS15835 0.69 +0.2 3,621,574 - DDA3937_RS15835 0.69 +0.3 3,621,618 + DDA3937_RS15835 0.73 +0.4 3,621,619 - DDA3937_RS15835 0.73 +0.7 3,621,635 + DDA3937_RS15835 0.75 +0.3 3,621,635 + DDA3937_RS15835 0.75 -0.7 3,621,636 - DDA3937_RS15835 0.75 +0.6 3,621,709 - DDA3937_RS15835 0.82 -1.3
Or see this region's nucleotide sequence