Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14480

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS14475 and DDA3937_RS23285 overlap by 17 nucleotidesDDA3937_RS23285 and DDA3937_RS14480 are separated by 24 nucleotidesDDA3937_RS14480 and DDA3937_RS14485 overlap by 14 nucleotidesDDA3937_RS14485 and DDA3937_RS14490 are separated by 202 nucleotides DDA3937_RS14475: DDA3937_RS14475 - 4-phosphoerythronate dehydrogenase PdxB, at 3,315,664 to 3,316,797 _RS14475 DDA3937_RS23285: DDA3937_RS23285 - hypothetical protein, at 3,316,781 to 3,316,999 _RS23285 DDA3937_RS14480: DDA3937_RS14480 - sensor histidine kinase, at 3,317,024 to 3,318,415 _RS14480 DDA3937_RS14485: DDA3937_RS14485 - transcriptional regulator TctD, at 3,318,402 to 3,319,076 _RS14485 DDA3937_RS14490: DDA3937_RS14490 - tripartite tricarboxylate transporter substrate binding protein, at 3,319,279 to 3,320,256 _RS14490 Position (kb) 3317 3318 3319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3316.036 kb on - strandat 3316.036 kb on - strand, within DDA3937_RS14475at 3316.275 kb on + strand, within DDA3937_RS14475at 3316.307 kb on - strand, within DDA3937_RS14475at 3316.307 kb on - strandat 3316.426 kb on + strand, within DDA3937_RS14475at 3316.505 kb on + strand, within DDA3937_RS14475at 3316.505 kb on + strand, within DDA3937_RS14475at 3316.505 kb on + strand, within DDA3937_RS14475at 3316.505 kb on + strand, within DDA3937_RS14475at 3316.505 kb on + strandat 3316.505 kb on + strandat 3316.506 kb on - strand, within DDA3937_RS14475at 3316.506 kb on - strand, within DDA3937_RS14475at 3316.506 kb on - strand, within DDA3937_RS14475at 3316.506 kb on - strandat 3316.506 kb on - strand, within DDA3937_RS14475at 3316.506 kb on - strand, within DDA3937_RS14475at 3316.767 kb on - strandat 3316.773 kb on + strandat 3316.773 kb on + strandat 3316.774 kb on - strandat 3316.786 kb on + strandat 3316.858 kb on + strand, within DDA3937_RS23285at 3317.015 kb on + strandat 3317.015 kb on + strandat 3317.015 kb on + strandat 3317.015 kb on + strandat 3317.015 kb on + strandat 3317.016 kb on - strandat 3317.016 kb on - strandat 3317.022 kb on + strandat 3317.023 kb on - strandat 3317.023 kb on - strandat 3317.102 kb on - strandat 3317.295 kb on + strand, within DDA3937_RS14480at 3317.315 kb on + strand, within DDA3937_RS14480at 3317.316 kb on - strand, within DDA3937_RS14480at 3317.316 kb on - strand, within DDA3937_RS14480at 3317.560 kb on + strand, within DDA3937_RS14480at 3317.716 kb on - strand, within DDA3937_RS14480at 3317.716 kb on - strand, within DDA3937_RS14480at 3317.825 kb on + strand, within DDA3937_RS14480at 3317.842 kb on + strand, within DDA3937_RS14480at 3317.859 kb on - strand, within DDA3937_RS14480at 3318.159 kb on + strand, within DDA3937_RS14480at 3318.160 kb on - strand, within DDA3937_RS14480at 3318.160 kb on - strand, within DDA3937_RS14480at 3318.163 kb on - strand, within DDA3937_RS14480at 3318.284 kb on - strandat 3318.292 kb on - strandat 3318.292 kb on - strandat 3318.324 kb on + strandat 3318.325 kb on - strandat 3318.376 kb on - strandat 3318.403 kb on + strandat 3318.431 kb on + strandat 3318.431 kb on + strandat 3318.431 kb on + strandat 3318.431 kb on + strandat 3318.431 kb on + strandat 3318.432 kb on - strandat 3318.432 kb on - strandat 3318.432 kb on - strandat 3318.432 kb on - strandat 3318.433 kb on + strandat 3318.492 kb on - strand, within DDA3937_RS14485at 3318.502 kb on + strand, within DDA3937_RS14485at 3318.502 kb on + strand, within DDA3937_RS14485at 3318.502 kb on + strand, within DDA3937_RS14485at 3318.503 kb on - strand, within DDA3937_RS14485at 3318.503 kb on - strand, within DDA3937_RS14485at 3318.503 kb on - strand, within DDA3937_RS14485at 3318.542 kb on + strand, within DDA3937_RS14485at 3318.556 kb on + strand, within DDA3937_RS14485at 3318.556 kb on + strand, within DDA3937_RS14485at 3318.556 kb on + strand, within DDA3937_RS14485at 3318.556 kb on + strand, within DDA3937_RS14485at 3318.562 kb on + strand, within DDA3937_RS14485at 3318.563 kb on - strand, within DDA3937_RS14485at 3318.563 kb on - strand, within DDA3937_RS14485at 3318.563 kb on - strandat 3318.603 kb on - strand, within DDA3937_RS14485at 3318.661 kb on + strand, within DDA3937_RS14485at 3318.708 kb on + strand, within DDA3937_RS14485at 3318.708 kb on + strand, within DDA3937_RS14485at 3318.709 kb on - strand, within DDA3937_RS14485at 3318.709 kb on - strand, within DDA3937_RS14485at 3318.709 kb on - strand, within DDA3937_RS14485at 3318.779 kb on + strand, within DDA3937_RS14485at 3318.780 kb on - strandat 3318.785 kb on - strand, within DDA3937_RS14485at 3318.785 kb on - strand, within DDA3937_RS14485at 3318.803 kb on + strand, within DDA3937_RS14485at 3318.804 kb on - strand, within DDA3937_RS14485at 3318.876 kb on - strand, within DDA3937_RS14485at 3318.908 kb on + strand, within DDA3937_RS14485at 3318.943 kb on + strand, within DDA3937_RS14485at 3318.943 kb on + strand, within DDA3937_RS14485at 3318.943 kb on + strand, within DDA3937_RS14485at 3318.943 kb on + strand, within DDA3937_RS14485at 3318.944 kb on - strand, within DDA3937_RS14485at 3318.944 kb on - strand, within DDA3937_RS14485at 3318.944 kb on - strand, within DDA3937_RS14485at 3318.944 kb on - strand, within DDA3937_RS14485at 3318.944 kb on - strand, within DDA3937_RS14485at 3319.065 kb on + strandat 3319.206 kb on + strandat 3319.207 kb on - strandat 3319.207 kb on - strandat 3319.218 kb on + strandat 3319.218 kb on + strandat 3319.218 kb on + strandat 3319.219 kb on - strandat 3319.219 kb on - strandat 3319.219 kb on - strandat 3319.226 kb on + strandat 3319.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,316,036 - -0.8
3,316,036 - DDA3937_RS14475 0.33 -1.4
3,316,275 + DDA3937_RS14475 0.54 +0.2
3,316,307 - DDA3937_RS14475 0.57 +0.2
3,316,307 - -0.8
3,316,426 + DDA3937_RS14475 0.67 +0.2
3,316,505 + DDA3937_RS14475 0.74 -1.4
3,316,505 + DDA3937_RS14475 0.74 +1.2
3,316,505 + DDA3937_RS14475 0.74 -1.4
3,316,505 + DDA3937_RS14475 0.74 +2.2
3,316,505 + +0.2
3,316,505 + -0.8
3,316,506 - DDA3937_RS14475 0.74 -1.8
3,316,506 - DDA3937_RS14475 0.74 +0.2
3,316,506 - DDA3937_RS14475 0.74 -1.8
3,316,506 - -1.8
3,316,506 - DDA3937_RS14475 0.74 -0.8
3,316,506 - DDA3937_RS14475 0.74 -2.7
3,316,767 - -1.4
3,316,773 + -2.8
3,316,773 + -1.4
3,316,774 - -0.5
3,316,786 + +0.7
3,316,858 + DDA3937_RS23285 0.35 +1.2
3,317,015 + +0.5
3,317,015 + -1.4
3,317,015 + -0.0
3,317,015 + -0.5
3,317,015 + +0.0
3,317,016 - +0.7
3,317,016 - +1.1
3,317,022 + -1.1
3,317,023 - +0.7
3,317,023 - -1.8
3,317,102 - +0.2
3,317,295 + DDA3937_RS14480 0.19 -1.8
3,317,315 + DDA3937_RS14480 0.21 -0.2
3,317,316 - DDA3937_RS14480 0.21 -1.1
3,317,316 - DDA3937_RS14480 0.21 -0.5
3,317,560 + DDA3937_RS14480 0.39 -0.5
3,317,716 - DDA3937_RS14480 0.50 +0.2
3,317,716 - DDA3937_RS14480 0.50 -3.2
3,317,825 + DDA3937_RS14480 0.58 -0.4
3,317,842 + DDA3937_RS14480 0.59 -0.5
3,317,859 - DDA3937_RS14480 0.60 -2.8
3,318,159 + DDA3937_RS14480 0.82 +0.7
3,318,160 - DDA3937_RS14480 0.82 -1.4
3,318,160 - DDA3937_RS14480 0.82 -0.3
3,318,163 - DDA3937_RS14480 0.82 -0.8
3,318,284 - -0.5
3,318,292 - -0.4
3,318,292 - -0.3
3,318,324 + -0.0
3,318,325 - -0.3
3,318,376 - -0.1
3,318,403 + -2.4
3,318,431 + -0.8
3,318,431 + +0.2
3,318,431 + -0.6
3,318,431 + -0.5
3,318,431 + -0.7
3,318,432 - -0.6
3,318,432 - -0.3
3,318,432 - -1.4
3,318,432 - +1.1
3,318,433 + +0.1
3,318,492 - DDA3937_RS14485 0.13 +1.3
3,318,502 + DDA3937_RS14485 0.15 -0.3
3,318,502 + DDA3937_RS14485 0.15 -1.1
3,318,502 + DDA3937_RS14485 0.15 -1.1
3,318,503 - DDA3937_RS14485 0.15 -1.3
3,318,503 - DDA3937_RS14485 0.15 -0.1
3,318,503 - DDA3937_RS14485 0.15 -0.4
3,318,542 + DDA3937_RS14485 0.21 +1.2
3,318,556 + DDA3937_RS14485 0.23 -0.4
3,318,556 + DDA3937_RS14485 0.23 +0.4
3,318,556 + DDA3937_RS14485 0.23 -0.8
3,318,556 + DDA3937_RS14485 0.23 -0.1
3,318,562 + DDA3937_RS14485 0.24 +1.2
3,318,563 - DDA3937_RS14485 0.24 -0.0
3,318,563 - DDA3937_RS14485 0.24 -1.0
3,318,563 - +1.2
3,318,603 - DDA3937_RS14485 0.30 -0.3
3,318,661 + DDA3937_RS14485 0.38 +0.7
3,318,708 + DDA3937_RS14485 0.45 -0.4
3,318,708 + DDA3937_RS14485 0.45 -1.1
3,318,709 - DDA3937_RS14485 0.45 +0.5
3,318,709 - DDA3937_RS14485 0.45 -0.4
3,318,709 - DDA3937_RS14485 0.45 +2.4
3,318,779 + DDA3937_RS14485 0.56 +0.2
3,318,780 - +0.2
3,318,785 - DDA3937_RS14485 0.57 -0.2
3,318,785 - DDA3937_RS14485 0.57 -0.8
3,318,803 + DDA3937_RS14485 0.59 +0.2
3,318,804 - DDA3937_RS14485 0.60 -0.4
3,318,876 - DDA3937_RS14485 0.70 -0.0
3,318,908 + DDA3937_RS14485 0.75 +0.1
3,318,943 + DDA3937_RS14485 0.80 -0.8
3,318,943 + DDA3937_RS14485 0.80 +0.9
3,318,943 + DDA3937_RS14485 0.80 +0.3
3,318,943 + DDA3937_RS14485 0.80 +0.0
3,318,944 - DDA3937_RS14485 0.80 -0.6
3,318,944 - DDA3937_RS14485 0.80 -0.7
3,318,944 - DDA3937_RS14485 0.80 -0.3
3,318,944 - DDA3937_RS14485 0.80 +0.5
3,318,944 - DDA3937_RS14485 0.80 -0.2
3,319,065 + -1.5
3,319,206 + +0.5
3,319,207 - +1.2
3,319,207 - -0.2
3,319,218 + +0.4
3,319,218 + -0.7
3,319,218 + +0.9
3,319,219 - -0.7
3,319,219 - +0.9
3,319,219 - -0.4
3,319,226 + -0.8
3,319,227 - -1.2

Or see this region's nucleotide sequence