Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13440

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,065,080	-		DDA3937_RS13435	0.59	-1.5
3,065,080	-		DDA3937_RS13435	0.59	-1.3
3,065,081	+		DDA3937_RS13435	0.59	-2.5
3,065,082	-		DDA3937_RS13435	0.60	-1.7
3,065,082	-		DDA3937_RS13435	0.60	-2.1
3,065,082	-		DDA3937_RS13435	0.60	-2.5
3,065,133	+		DDA3937_RS13435	0.62	-0.3
3,065,133	+		DDA3937_RS13435	0.62	-2.2
3,065,133	+				-0.5
3,065,134	-		DDA3937_RS13435	0.62	-1.9
3,065,134	-		DDA3937_RS13435	0.62	-3.6
3,065,134	-		DDA3937_RS13435	0.62	-1.2
3,065,134	-		DDA3937_RS13435	0.62	-2.6
3,065,138	+		DDA3937_RS13435	0.62	+0.5
3,065,138	+		DDA3937_RS13435	0.62	-0.9
3,065,138	+		DDA3937_RS13435	0.62	-0.9
3,065,139	-		DDA3937_RS13435	0.63	-1.2
3,065,186	+		DDA3937_RS13435	0.65	-2.3
3,065,186	+		DDA3937_RS13435	0.65	-1.5
3,065,187	-		DDA3937_RS13435	0.65	-1.1
3,065,229	+		DDA3937_RS13435	0.67	-0.7
3,065,230	-		DDA3937_RS13435	0.67	-1.5
3,065,230	-		DDA3937_RS13435	0.67	-0.6
3,065,230	-		DDA3937_RS13435	0.67	-0.5
3,065,230	-		DDA3937_RS13435	0.67	-1.0
3,065,230	-		DDA3937_RS13435	0.67	-1.9
3,065,230	-		DDA3937_RS13435	0.67	+0.1
3,065,325	+		DDA3937_RS13435	0.72	-1.2
3,065,345	+		DDA3937_RS13435	0.73	-1.1
3,065,345	+		DDA3937_RS13435	0.73	-0.1
3,065,345	+		DDA3937_RS13435	0.73	-2.7
3,065,345	+		DDA3937_RS13435	0.73	-1.7
3,065,345	+		DDA3937_RS13435	0.73	-0.1
3,065,345	+		DDA3937_RS13435	0.73	+0.1
3,065,346	-		DDA3937_RS13435	0.73	-0.7
3,065,346	-		DDA3937_RS13435	0.73	-1.8
3,065,346	-		DDA3937_RS13435	0.73	-1.9
3,065,346	-				+0.1
3,065,346	-		DDA3937_RS13435	0.73	-2.7
3,065,346	-		DDA3937_RS13435	0.73	-1.5
3,065,349	+		DDA3937_RS13435	0.73	-1.5
3,065,349	+		DDA3937_RS13435	0.73	-1.0
3,065,349	+		DDA3937_RS13435	0.73	-1.3
3,065,349	+				-0.9
3,065,350	-		DDA3937_RS13435	0.73	-0.7
3,065,350	-		DDA3937_RS13435	0.73	-1.9
3,065,350	-		DDA3937_RS13435	0.73	-0.0
3,065,350	-		DDA3937_RS13435	0.73	-1.6
3,065,350	-		DDA3937_RS13435	0.73	-1.5
3,065,352	+		DDA3937_RS13435	0.74	-1.8
3,065,473	+				-0.3
3,065,473	+		DDA3937_RS13435	0.80	-0.5
3,065,473	+				-1.5
3,065,473	+		DDA3937_RS13435	0.80	+0.9
3,065,474	-		DDA3937_RS13435	0.80	-0.5
3,065,571	+		DDA3937_RS13435	0.85	-0.2
3,065,571	+		DDA3937_RS13435	0.85	-1.5
3,065,571	+		DDA3937_RS13435	0.85	-2.5
3,065,571	+		DDA3937_RS13435	0.85	-1.5
3,065,571	+		DDA3937_RS13435	0.85	-1.7
3,065,571	+		DDA3937_RS13435	0.85	-1.5
3,065,572	-		DDA3937_RS13435	0.85	-1.5
3,065,575	+		DDA3937_RS13435	0.85	-0.4
3,065,576	-		DDA3937_RS13435	0.85	-1.5
3,065,576	-		DDA3937_RS13435	0.85	-1.9
3,065,576	-		DDA3937_RS13435	0.85	-1.2
3,065,576	-		DDA3937_RS13435	0.85	-2.5
3,065,576	-		DDA3937_RS13435	0.85	-1.5
3,065,576	-		DDA3937_RS13435	0.85	-1.9
3,065,576	-		DDA3937_RS13435	0.85	-0.8
3,065,576	-		DDA3937_RS13435	0.85	-1.1
3,065,594	+		DDA3937_RS13435	0.86	-2.3
3,065,595	-		DDA3937_RS13435	0.86	-2.7
3,065,595	-		DDA3937_RS13435	0.86	-1.8
3,065,595	-		DDA3937_RS13435	0.86	-1.7
3,065,597	+		DDA3937_RS13435	0.86	-1.2
3,065,598	-		DDA3937_RS13435	0.86	-1.9
3,065,598	-		DDA3937_RS13435	0.86	-1.7
3,065,598	-		DDA3937_RS13435	0.86	-2.3
3,065,643	+		DDA3937_RS13435	0.89	-0.4
3,065,643	+		DDA3937_RS13435	0.89	-1.5
3,065,644	-		DDA3937_RS13435	0.89	-0.4
3,065,649	+		DDA3937_RS13435	0.89	+0.0
3,065,649	+		DDA3937_RS13435	0.89	-0.5
3,065,650	-		DDA3937_RS13435	0.89	-0.5
3,065,650	-		DDA3937_RS13435	0.89	-2.4
3,065,660	+		DDA3937_RS13435	0.90	-0.9
3,065,660	+		DDA3937_RS13435	0.90	-2.0
3,065,660	+		DDA3937_RS13435	0.90	-3.2
3,065,661	-		DDA3937_RS13435	0.90	-1.9
3,065,703	-				-0.5
3,065,716	-				-0.5
3,065,757	+				+0.9
3,065,758	-				-1.4
3,065,759	+				-1.2
3,065,791	-				-2.2
3,065,803	+				-2.5
3,065,804	-				-0.7
3,065,804	-				-1.0
3,065,804	-				-2.5
3,065,824	+				-0.5
3,065,874	-				+0.1
3,065,874	-				-0.8
3,065,874	-				-0.2
3,065,874	-				-2.0
3,065,879	+				-0.2
3,065,879	+				+0.4
3,065,879	+				-1.1
3,065,880	-				-0.9
3,065,880	-				-0.5
3,065,901	+				-0.6
3,065,901	+				-2.7
3,065,902	-				-0.5
3,065,902	-				-0.8
3,065,902	-				-1.9
3,065,905	+				-2.2
3,065,905	+				+0.1
3,065,905	+				-0.9
3,065,906	-				+0.7
3,065,906	-				-0.0
3,065,906	-				+0.6
3,065,936	+				-0.9
3,065,941	+				-0.5
3,065,942	-				+1.3
3,065,948	+				-2.5
3,065,948	+				-1.9
3,065,948	+				-2.4
3,065,948	+				-1.0
3,065,948	+				-1.5
3,065,948	+				-0.2
3,065,948	+				-2.9
3,065,948	+				-1.5
3,065,948	+				-1.2
3,065,948	+				-1.1
3,065,948	+				-1.9
3,065,949	-				-0.5
3,065,949	-				-0.2
3,065,949	-				-1.2
3,065,949	-				+0.3
3,065,949	-				+0.1
3,065,949	-				-0.7
3,065,949	-				+0.1
3,065,949	-				+0.2
3,065,949	-				-0.4
3,065,949	-				+0.1
3,065,950	+				-0.2
3,065,950	+				-0.5
3,065,950	+				-0.7
3,065,950	+				-2.1
3,065,950	+				-1.1
3,065,950	+				-1.9
3,065,950	+				-0.5
3,065,951	-				-0.7
3,065,951	-				-0.8
3,065,951	-				-0.9
3,065,951	-				-1.2
3,065,951	-				-0.3
3,065,951	-				-1.5
3,065,951	-				-0.3
3,065,951	-				+0.8
3,065,951	-				-0.3
3,065,951	-				-1.4
3,065,951	-				-0.1
3,065,951	-				+0.6
3,065,951	-				-1.9
3,065,951	-				-1.4
3,065,951	-				-0.5
3,065,951	-				-1.7
3,065,951	-				+0.1
3,065,951	-				-0.0
3,065,955	-				-0.6
3,065,987	+				+0.1
3,066,012	+				-0.6
3,066,012	+				-0.5
3,066,012	+				+1.1
3,066,013	-				-0.6
3,066,013	-				-0.9
3,066,013	-				-0.6
3,066,013	-				-1.0
3,066,013	-				-0.2
3,066,014	+				-0.0
3,066,014	+				-0.7
3,066,015	-				+0.7
3,066,064	+				-0.4
3,066,064	+				-0.9
3,066,081	-		DDA3937_RS13440	0.10	+0.1
3,066,099	-		DDA3937_RS13440	0.12	-1.5
3,066,099	-		DDA3937_RS13440	0.12	+0.1
3,066,212	+		DDA3937_RS13440	0.24	-0.1
3,066,213	-		DDA3937_RS13440	0.24	-2.3
3,066,222	-		DDA3937_RS13440	0.25	+0.1
3,066,222	-		DDA3937_RS13440	0.25	-1.0
3,066,224	-		DDA3937_RS13440	0.25	-0.3
3,066,224	-		DDA3937_RS13440	0.25	-0.6
3,066,250	-		DDA3937_RS13440	0.28	-0.1
3,066,266	+		DDA3937_RS13440	0.29	-0.7
3,066,267	-		DDA3937_RS13440	0.30	-0.5
3,066,267	-		DDA3937_RS13440	0.30	-0.8
3,066,267	-		DDA3937_RS13440	0.30	-0.6
3,066,267	-		DDA3937_RS13440	0.30	-0.9
3,066,267	-		DDA3937_RS13440	0.30	-1.1
3,066,277	-		DDA3937_RS13440	0.31	-1.2
3,066,306	+		DDA3937_RS13440	0.34	-0.9
3,066,306	+		DDA3937_RS13440	0.34	-0.4
3,066,307	-		DDA3937_RS13440	0.34	-1.6
3,066,358	-		DDA3937_RS13440	0.39	-0.5
3,066,405	+		DDA3937_RS13440	0.44	-0.9
3,066,406	-		DDA3937_RS13440	0.44	-0.3
3,066,519	+		DDA3937_RS13440	0.56	+0.1
3,066,519	+		DDA3937_RS13440	0.56	-2.1
3,066,519	+		DDA3937_RS13440	0.56	-1.0
3,066,520	-		DDA3937_RS13440	0.56	-1.0
3,066,520	-		DDA3937_RS13440	0.56	-2.3
3,066,520	-		DDA3937_RS13440	0.56	-1.0
3,066,520	-		DDA3937_RS13440	0.56	-0.6
3,066,520	-		DDA3937_RS13440	0.56	-0.9
3,066,551	-		DDA3937_RS13440	0.59	-2.4
3,066,551	-		DDA3937_RS13440	0.59	-1.5
3,066,574	+		DDA3937_RS13440	0.62	-0.6
3,066,574	+		DDA3937_RS13440	0.62	-0.7
3,066,575	-		DDA3937_RS13440	0.62	+0.3
3,066,713	+		DDA3937_RS13440	0.76	-0.2
3,066,713	+		DDA3937_RS13440	0.76	+0.4
3,066,713	+		DDA3937_RS13440	0.76	-1.5
3,066,713	+		DDA3937_RS13440	0.76	-0.5
3,066,713	+		DDA3937_RS13440	0.76	-1.5
3,066,714	-		DDA3937_RS13440	0.77	-0.6
3,066,714	-		DDA3937_RS13440	0.77	-2.3
3,066,714	-		DDA3937_RS13440	0.77	+0.0
3,066,714	-		DDA3937_RS13440	0.77	-0.5
3,066,714	-		DDA3937_RS13440	0.77	-0.8
3,066,714	-		DDA3937_RS13440	0.77	-2.0
3,066,714	-		DDA3937_RS13440	0.77	-0.3
3,066,714	-		DDA3937_RS13440	0.77	-2.0
3,066,753	+		DDA3937_RS13440	0.81	-0.3
3,066,753	+		DDA3937_RS13440	0.81	+0.5
3,066,754	-		DDA3937_RS13440	0.81	-1.0
3,066,865	+				-1.2
3,066,865	+				-0.3
3,066,865	+				-1.1
3,066,865	+				+1.1
3,066,866	-				-0.2
3,066,866	-				+0.1
3,066,866	-				-0.7
3,066,866	-				-0.0
3,066,866	-				-0.9
3,066,866	-				-1.9
3,066,902	+				+0.0
3,066,902	+				-0.9
3,066,903	-				-0.2
3,066,903	-				+0.5
3,066,903	-				-0.6
3,066,903	-				-0.2
3,066,915	+				-0.6
3,066,915	+				-0.7
3,066,941	+				+0.5
3,067,013	+				-1.6
3,067,049	+		DDA3937_RS13445	0.10	+0.4
3,067,068	+		DDA3937_RS13445	0.12	-0.7
3,067,126	-		DDA3937_RS13445	0.17	-0.4
3,067,164	-		DDA3937_RS13445	0.21	-0.6
3,067,269	-		DDA3937_RS13445	0.30	-0.4
3,067,274	+		DDA3937_RS13445	0.30	-0.9
3,067,311	-		DDA3937_RS13445	0.34	-0.1
3,067,311	-		DDA3937_RS13445	0.34	-0.9
3,067,376	+		DDA3937_RS13445	0.40	-0.2
3,067,467	+		DDA3937_RS13445	0.48	-0.7
3,067,484	+		DDA3937_RS13445	0.49	-0.7
3,067,484	+		DDA3937_RS13445	0.49	-0.3
3,067,484	+		DDA3937_RS13445	0.49	-1.8
3,067,502	+		DDA3937_RS13445	0.51	-0.8
3,067,502	+		DDA3937_RS13445	0.51	-1.1
3,067,542	-		DDA3937_RS13445	0.55	+0.5
3,067,564	-		DDA3937_RS13445	0.57	-0.7
3,067,564	-		DDA3937_RS13445	0.57	-2.2
3,067,634	-		DDA3937_RS13445	0.63	-0.3
3,067,634	-		DDA3937_RS13445	0.63	+0.0
3,067,634	-		DDA3937_RS13445	0.63	-2.2
3,067,634	-		DDA3937_RS13445	0.63	-0.5
3,067,716	+		DDA3937_RS13445	0.70	-2.3
3,067,716	+		DDA3937_RS13445	0.70	-2.5
3,067,717	-				-1.9
3,067,717	-		DDA3937_RS13445	0.70	-0.7
3,067,717	-		DDA3937_RS13445	0.70	-1.4
3,067,717	-		DDA3937_RS13445	0.70	-1.3
3,067,845	-		DDA3937_RS13445	0.82	-0.6
3,067,906	-		DDA3937_RS13445	0.87	-0.2
3,067,918	+		DDA3937_RS13445	0.88	-0.4
3,067,935	-				-0.7