Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10145

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,287,066	+		DDA3937_RS10140	0.25	+0.9
2,287,106	+				+2.5
2,287,229	+		DDA3937_RS10140	0.50	+1.1
2,287,230	-		DDA3937_RS10140	0.50	-1.1
2,287,230	-		DDA3937_RS10140	0.50	+0.1
2,287,284	+		DDA3937_RS10140	0.59	-0.5
2,287,284	+		DDA3937_RS10140	0.59	+0.9
2,287,284	+				+2.5
2,287,285	-		DDA3937_RS10140	0.59	-1.2
2,287,285	-		DDA3937_RS10140	0.59	+0.1
2,287,322	+		DDA3937_RS10140	0.65	+0.2
2,287,323	-		DDA3937_RS10140	0.65	-2.2
2,287,419	+		DDA3937_RS10140	0.80	-2.1
2,287,420	-		DDA3937_RS10140	0.80	-0.1
2,287,420	-		DDA3937_RS10140	0.80	+0.8
2,287,420	-		DDA3937_RS10140	0.80	-0.9
2,287,558	-				+0.4
2,287,558	-				-0.4
2,287,558	-				-0.1
2,287,562	+				+0.4
2,287,562	+				-0.2
2,287,562	+				+1.0
2,287,562	+				+1.8
2,287,563	-				-0.1
2,287,563	-				+0.3
2,287,637	+				-1.2
2,287,638	-				+0.4
2,287,705	-				+0.3
2,287,760	+				-1.1
2,287,812	+				-0.2
2,287,826	+				+0.9
2,287,826	+				-0.4
2,287,827	-				+0.3
2,287,906	+				-2.1
2,287,994	-		DDA3937_RS10145	0.19	-0.6
2,288,138	+		DDA3937_RS10145	0.31	-0.1
2,288,139	-		DDA3937_RS10145	0.32	+0.6
2,288,139	-				+2.8
2,288,148	+		DDA3937_RS10145	0.32	-0.1
2,288,352	+		DDA3937_RS10145	0.50	+0.6
2,288,408	-		DDA3937_RS10145	0.54	+0.3
2,288,489	+		DDA3937_RS10145	0.61	+0.6
2,288,490	-		DDA3937_RS10145	0.61	+0.8
2,288,490	-		DDA3937_RS10145	0.61	+0.7
2,288,678	+		DDA3937_RS10145	0.77	+0.5
2,288,678	+		DDA3937_RS10145	0.77	+1.1
2,288,678	+		DDA3937_RS10145	0.77	-0.8
2,288,678	+		DDA3937_RS10145	0.77	+0.2
2,288,679	-		DDA3937_RS10145	0.77	+0.3
2,288,679	-		DDA3937_RS10145	0.77	-0.2
2,288,679	-		DDA3937_RS10145	0.77	-0.8
2,288,679	-		DDA3937_RS10145	0.77	-1.1
2,288,691	-		DDA3937_RS10145	0.78	-0.7
2,288,691	-		DDA3937_RS10145	0.78	-0.1
2,288,714	-		DDA3937_RS10145	0.80	-0.9
2,288,765	+		DDA3937_RS10145	0.85	-0.2
2,288,765	+		DDA3937_RS10145	0.85	+0.1
2,288,765	+		DDA3937_RS10145	0.85	+0.7
2,288,766	-		DDA3937_RS10145	0.85	-1.4
2,288,766	-		DDA3937_RS10145	0.85	-0.6
2,288,766	-		DDA3937_RS10145	0.85	+0.0
2,288,766	-		DDA3937_RS10145	0.85	+1.1
2,288,940	+				-0.5
2,288,941	-				+0.8
2,288,946	-				-0.4
2,288,979	+				-0.7
2,288,980	-				+0.1
2,289,049	-				+0.9
2,289,291	+				+0.4
2,289,292	-				+0.5
2,289,292	-				-0.1
2,289,295	+				-0.1
2,289,295	+				-1.4
2,289,295	+				+0.7
2,289,296	-				+0.4
2,289,296	-				+1.5
2,289,296	-				-0.1
2,289,298	+				-0.1
2,289,299	-				-0.6
2,289,412	+				+0.8
2,289,412	+				-1.6
2,289,412	+				+0.4
2,289,413	-				+0.2
2,289,413	-				-0.3
2,289,460	+				+1.3
2,289,460	+		DDA3937_RS10150	0.11	+0.4
2,289,460	+		DDA3937_RS10150	0.11	+1.1
2,289,460	+		DDA3937_RS10150	0.11	-0.2
2,289,461	-		DDA3937_RS10150	0.11	+0.4
2,289,511	+		DDA3937_RS10150	0.14	-0.8
2,289,512	-		DDA3937_RS10150	0.14	-0.2
2,289,520	+		DDA3937_RS10150	0.14	-0.1
2,289,521	-		DDA3937_RS10150	0.14	-0.2
2,289,521	-		DDA3937_RS10150	0.14	-0.5
2,289,521	-		DDA3937_RS10150	0.14	-1.4
2,289,521	-		DDA3937_RS10150	0.14	-0.4
2,289,566	+		DDA3937_RS10150	0.17	+0.1
2,289,567	-		DDA3937_RS10150	0.17	+0.6
2,289,608	-		DDA3937_RS10150	0.19	-0.3
2,289,685	+		DDA3937_RS10150	0.22	+0.4
2,289,685	+		DDA3937_RS10150	0.22	-2.5
2,289,686	-		DDA3937_RS10150	0.22	+1.3
2,289,686	-		DDA3937_RS10150	0.22	+0.8
2,289,787	+		DDA3937_RS10150	0.27	+1.9
2,289,787	+		DDA3937_RS10150	0.27	-2.6
2,289,787	+		DDA3937_RS10150	0.27	+0.6
2,289,788	-		DDA3937_RS10150	0.27	-0.5
2,289,788	-		DDA3937_RS10150	0.27	+1.5
2,289,788	-		DDA3937_RS10150	0.27	+0.8
2,289,788	-		DDA3937_RS10150	0.27	-0.6
2,289,790	+		DDA3937_RS10150	0.27	+0.1
2,289,790	+		DDA3937_RS10150	0.27	+1.4
2,289,790	+		DDA3937_RS10150	0.27	-0.0
2,289,790	+		DDA3937_RS10150	0.27	-1.4
2,289,790	+		DDA3937_RS10150	0.27	+0.9
2,289,790	+		DDA3937_RS10150	0.27	+0.4
2,289,790	+		DDA3937_RS10150	0.27	-0.6
2,289,790	+		DDA3937_RS10150	0.27	+0.3
2,289,790	+		DDA3937_RS10150	0.27	-0.1
2,289,791	-		DDA3937_RS10150	0.28	+0.7
2,289,791	-		DDA3937_RS10150	0.28	+1.3
2,289,791	-		DDA3937_RS10150	0.28	+0.5
2,289,791	-		DDA3937_RS10150	0.28	+0.7
2,289,791	-		DDA3937_RS10150	0.28	-0.3
2,289,791	-		DDA3937_RS10150	0.28	-1.1
2,289,799	-		DDA3937_RS10150	0.28	-1.2
2,289,832	+		DDA3937_RS10150	0.30	-1.5
2,289,877	+		DDA3937_RS10150	0.32	+0.9
2,289,878	-		DDA3937_RS10150	0.32	-0.3
2,289,901	+		DDA3937_RS10150	0.33	-0.1
2,289,901	+		DDA3937_RS10150	0.33	+1.1
2,289,901	+		DDA3937_RS10150	0.33	+0.1
2,289,901	+		DDA3937_RS10150	0.33	-0.7
2,289,902	-		DDA3937_RS10150	0.33	-0.2
2,289,907	-		DDA3937_RS10150	0.33	-0.1
2,289,907	-		DDA3937_RS10150	0.33	-0.5
2,289,934	+		DDA3937_RS10150	0.35	-1.1
2,289,934	+		DDA3937_RS10150	0.35	-0.2
2,289,934	+		DDA3937_RS10150	0.35	+0.4
2,289,936	+		DDA3937_RS10150	0.35	-0.5
2,289,936	+		DDA3937_RS10150	0.35	-0.1
2,289,937	-		DDA3937_RS10150	0.35	-0.1