Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09770 and DDA3937_RS09775 are separated by 99 nucleotides DDA3937_RS09775 and DDA3937_RS09780 are separated by 32 nucleotides DDA3937_RS09780 and DDA3937_RS09785 overlap by 1 nucleotides
DDA3937_RS09770: DDA3937_RS09770 - fumarylacetoacetate hydrolase family protein, at 2,206,825 to 2,207,709
_RS09770
DDA3937_RS09775: DDA3937_RS09775 - [citrate (pro-3S)-lyase] ligase, at 2,207,809 to 2,208,852
_RS09775
DDA3937_RS09780: DDA3937_RS09780 - citrate lyase acyl carrier protein, at 2,208,885 to 2,209,175
_RS09780
DDA3937_RS09785: DDA3937_RS09785 - citrate (pro-3S)-lyase subunit beta, at 2,209,175 to 2,210,065
_RS09785
Position (kb)
2207
2208
2209 Strain fitness (log2 ratio)
-1
0
1
2 at 2207.177 kb on - strand, within DDA3937_RS09770 at 2207.503 kb on - strand, within DDA3937_RS09770 at 2207.714 kb on + strand at 2207.757 kb on + strand at 2207.757 kb on + strand at 2207.757 kb on + strand at 2207.761 kb on - strand at 2207.761 kb on - strand at 2207.761 kb on - strand at 2207.950 kb on - strand, within DDA3937_RS09775 at 2207.988 kb on + strand, within DDA3937_RS09775 at 2209.661 kb on + strand, within DDA3937_RS09785 at 2209.661 kb on + strand at 2209.709 kb on + strand, within DDA3937_RS09785 at 2209.709 kb on + strand at 2209.710 kb on - strand, within DDA3937_RS09785 at 2209.710 kb on - strand, within DDA3937_RS09785 at 2209.773 kb on - strand, within DDA3937_RS09785
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,207,177 - DDA3937_RS09770 0.40 -1.0 2,207,503 - DDA3937_RS09770 0.77 +0.4 2,207,714 + -0.0 2,207,757 + -0.1 2,207,757 + +0.5 2,207,757 + +0.2 2,207,761 - +1.4 2,207,761 - -0.2 2,207,761 - +0.0 2,207,950 - DDA3937_RS09775 0.14 -0.7 2,207,988 + DDA3937_RS09775 0.17 -0.4 2,209,661 + DDA3937_RS09785 0.55 -0.3 2,209,661 + +2.1 2,209,709 + DDA3937_RS09785 0.60 +0.3 2,209,709 + +1.2 2,209,710 - DDA3937_RS09785 0.60 +1.5 2,209,710 - DDA3937_RS09785 0.60 +0.4 2,209,773 - DDA3937_RS09785 0.67 +0.1
Or see this region's nucleotide sequence