Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS23075 and DDA3937_RS06770 are separated by 127 nucleotides DDA3937_RS06770 and DDA3937_RS06775 overlap by 4 nucleotides
DDA3937_RS23075: DDA3937_RS23075 - hypothetical protein, at 1,513,861 to 1,515,339
_RS23075
DDA3937_RS06770: DDA3937_RS06770 - oligosaccharide flippase family protein, at 1,515,467 to 1,516,738
_RS06770
DDA3937_RS06775: DDA3937_RS06775 - glycosyltransferase family 2 protein, at 1,516,735 to 1,517,733
_RS06775
Position (kb)
1515
1516
1517 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1514.561 kb on - strand, within DDA3937_RS23075 at 1514.627 kb on + strand, within DDA3937_RS23075 at 1514.789 kb on - strand, within DDA3937_RS23075 at 1514.906 kb on - strand, within DDA3937_RS23075 at 1515.067 kb on - strand, within DDA3937_RS23075 at 1515.276 kb on + strand at 1515.337 kb on + strand at 1515.360 kb on + strand at 1515.446 kb on + strand at 1515.459 kb on + strand at 1515.600 kb on - strand, within DDA3937_RS06770 at 1515.630 kb on + strand, within DDA3937_RS06770 at 1515.747 kb on + strand, within DDA3937_RS06770 at 1516.182 kb on - strand, within DDA3937_RS06770 at 1516.237 kb on + strand, within DDA3937_RS06770 at 1516.689 kb on + strand at 1516.698 kb on + strand at 1516.758 kb on + strand at 1516.759 kb on - strand at 1517.095 kb on + strand, within DDA3937_RS06775 at 1517.319 kb on + strand, within DDA3937_RS06775 at 1517.554 kb on + strand, within DDA3937_RS06775
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,514,561 - DDA3937_RS23075 0.47 -0.3 1,514,627 + DDA3937_RS23075 0.52 +1.7 1,514,789 - DDA3937_RS23075 0.63 +0.2 1,514,906 - DDA3937_RS23075 0.71 -0.8 1,515,067 - DDA3937_RS23075 0.82 +0.4 1,515,276 + +1.8 1,515,337 + -1.2 1,515,360 + +0.7 1,515,446 + -0.2 1,515,459 + +0.4 1,515,600 - DDA3937_RS06770 0.10 +0.1 1,515,630 + DDA3937_RS06770 0.13 -2.2 1,515,747 + DDA3937_RS06770 0.22 -0.5 1,516,182 - DDA3937_RS06770 0.56 -0.4 1,516,237 + DDA3937_RS06770 0.61 -2.2 1,516,689 + -0.2 1,516,698 + -0.2 1,516,758 + +0.7 1,516,759 - -0.4 1,517,095 + DDA3937_RS06775 0.36 -0.3 1,517,319 + DDA3937_RS06775 0.58 -1.3 1,517,554 + DDA3937_RS06775 0.82 +0.5
Or see this region's nucleotide sequence