Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05950

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,338,934	+		DDA3937_RS05945	0.38	-0.1
1,339,069	+		DDA3937_RS05945	0.50	-0.5
1,339,070	-		DDA3937_RS05945	0.50	+0.0
1,339,070	-		DDA3937_RS05945	0.50	+0.1
1,339,070	-		DDA3937_RS05945	0.50	+0.1
1,339,070	-		DDA3937_RS05945	0.50	-0.3
1,339,455	+		DDA3937_RS05945	0.82	+3.1
1,339,455	+		DDA3937_RS05945	0.82	+0.7
1,339,455	+		DDA3937_RS05945	0.82	-1.4
1,339,455	+		DDA3937_RS05945	0.82	+1.6
1,339,456	-		DDA3937_RS05945	0.82	-0.7
1,339,551	-				-1.0
1,339,557	-				+0.4
1,339,629	+				-0.2
1,339,629	+				-1.8
1,339,668	+				-0.5
1,339,668	+				+0.7
1,339,669	-				-0.7
1,339,717	-				-0.0
1,339,732	+				-0.4
1,339,733	-				-1.3
1,339,733	-				+0.9
1,339,745	-				-0.4
1,339,817	+		DDA3937_RS05950	0.10	+0.0
1,339,818	-		DDA3937_RS05950	0.10	-0.7
1,339,818	-		DDA3937_RS05950	0.10	+0.8
1,339,989	-		DDA3937_RS05950	0.30	+0.7
1,340,112	+		DDA3937_RS05950	0.45	-0.4
1,340,113	-		DDA3937_RS05950	0.45	-1.2
1,340,178	+		DDA3937_RS05950	0.52	-0.1
1,340,235	+		DDA3937_RS05950	0.59	-1.0
1,340,338	+		DDA3937_RS05950	0.71	+0.4
1,340,338	+		DDA3937_RS05950	0.71	+0.4
1,340,338	+		DDA3937_RS05950	0.71	-0.7
1,340,339	-		DDA3937_RS05950	0.71	+0.8
1,340,339	-		DDA3937_RS05950	0.71	+0.1
1,340,414	+		DDA3937_RS05950	0.80	+1.0
1,340,497	+		DDA3937_RS05950	0.89	+0.5
1,340,497	+		DDA3937_RS05950	0.89	-0.1
1,340,497	+		DDA3937_RS05950	0.89	+0.0
1,340,498	-		DDA3937_RS05950	0.89	+0.9
1,340,583	+				-1.0
1,340,583	+				-0.3
1,340,583	+				-0.2
1,340,583	+				-1.6
1,340,584	-				+0.3
1,340,584	-				+0.5
1,340,584	-				+0.3
1,340,584	-				-0.2
1,340,618	-				+0.0
1,340,708	+				+0.4
1,340,708	+				-0.7
1,340,708	+				-0.4
1,340,717	-				-0.0
1,340,915	+		DDA3937_RS05955	0.34	-1.1
1,340,915	+		DDA3937_RS05955	0.34	+0.0
1,340,915	+		DDA3937_RS05955	0.34	-1.5
1,340,915	+		DDA3937_RS05955	0.34	-1.1
1,340,916	-		DDA3937_RS05955	0.34	+0.3
1,340,916	-				-0.1
1,340,916	-		DDA3937_RS05955	0.34	-0.4
1,340,916	-		DDA3937_RS05955	0.34	-1.1
1,340,976	+		DDA3937_RS05955	0.42	-0.1
1,340,977	-		DDA3937_RS05955	0.42	-3.3
1,340,977	-		DDA3937_RS05955	0.42	-0.2
1,341,044	-		DDA3937_RS05955	0.51	-0.4
1,341,103	+		DDA3937_RS05955	0.58	-0.6
1,341,168	+		DDA3937_RS05955	0.67	+0.3
1,341,168	+		DDA3937_RS05955	0.67	+0.1
1,341,202	-		DDA3937_RS05955	0.71	-0.7
1,341,434	-				+0.8
1,341,434	-				-1.2
1,341,438	-				+0.2
1,341,451	-				+0.3
1,341,451	-				+0.1
1,341,471	-				-1.0
1,341,474	+				-0.3
1,341,474	+				-0.6
1,341,474	+				-0.6
1,341,474	+				-0.2
1,341,474	+				-0.3
1,341,474	+				-1.5
1,341,474	+				-1.1
1,341,475	-				-2.3
1,341,478	-				-1.1
1,341,484	+				-1.2
1,341,492	+				+0.1
1,341,493	-				+0.4
1,341,493	-				-2.3
1,341,499	+				+2.7
1,341,508	-				+2.0
1,341,508	-				+0.6
1,341,513	+				+0.1
1,341,513	+				+1.5
1,341,513	+				+0.2
1,341,513	+				+0.1
1,341,513	+				+0.5
1,341,513	+				-1.2
1,341,513	+				+0.9
1,341,514	-				+0.4
1,341,514	-				-1.7
1,341,516	+				+0.7
1,341,516	+				+0.2
1,341,516	+				-0.0
1,341,517	-				-0.7
1,341,517	-				+2.1
1,341,517	-				+1.1