Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05910

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,329,454	+		DDA3937_RS05905	0.84	-0.2
1,329,524	+				-0.3
1,329,524	+				-0.1
1,329,524	+				+0.3
1,329,525	-				-0.9
1,329,525	-				-0.4
1,329,528	+				-0.5
1,329,528	+				+0.1
1,329,529	-				+1.5
1,329,569	+		DDA3937_RS23065	0.21	+0.6
1,329,570	-		DDA3937_RS23065	0.22	-0.0
1,329,629	-		DDA3937_RS23065	0.44	+0.1
1,329,632	-		DDA3937_RS23065	0.46	+2.1
1,329,632	-		DDA3937_RS23065	0.46	-0.2
1,329,684	+		DDA3937_RS23065	0.66	-0.4
1,329,685	-		DDA3937_RS23065	0.66	-0.4
1,329,685	-		DDA3937_RS23065	0.66	+0.1
1,329,759	+				-1.3
1,329,760	-				+1.3
1,329,766	-				-1.7
1,329,838	+				-0.7
1,329,839	-				-0.4
1,329,839	-				-0.7
1,329,842	+				+0.9
1,329,843	-				-1.3
1,329,851	+				-0.7
1,329,852	-				+0.2
1,329,856	+				-0.5
1,329,857	-				-0.3
1,329,859	-				+0.3
1,329,922	-				+0.9
1,329,937	+				+0.3
1,329,937	+				-0.4
1,329,938	-				-1.1
1,330,032	-				-0.7
1,330,164	+				-1.1
1,330,165	-				-0.1
1,330,165	-				+0.1
1,330,167	-				+0.7
1,330,167	-				-2.3
1,330,269	-				+0.0
1,330,279	+				-1.1
1,330,288	+				+0.3
1,330,299	-				-0.6
1,330,302	+				-0.9
1,330,303	-				-1.1
1,330,303	-				-2.1
1,330,311	-				-0.3
1,330,311	-				+0.3
1,330,328	-				+0.3
1,330,334	-				-0.4
1,330,341	+				+0.9
1,330,343	+				+0.1
1,330,343	+				+0.5
1,330,344	-				-0.4
1,330,362	-				-0.1
1,330,586	+		DDA3937_RS05910	0.16	-0.4
1,330,586	+		DDA3937_RS05910	0.16	+0.1
1,330,586	+		DDA3937_RS05910	0.16	+0.6
1,330,586	+		DDA3937_RS05910	0.16	+0.7
1,330,586	+		DDA3937_RS05910	0.16	+0.3
1,330,586	+		DDA3937_RS05910	0.16	-0.4
1,330,587	-		DDA3937_RS05910	0.16	-1.5
1,330,587	-		DDA3937_RS05910	0.16	-0.2
1,330,587	-		DDA3937_RS05910	0.16	+0.5
1,330,587	-		DDA3937_RS05910	0.16	-0.6
1,330,652	+		DDA3937_RS05910	0.21	+0.1
1,330,653	-		DDA3937_RS05910	0.21	+0.1
1,330,653	-		DDA3937_RS05910	0.21	+0.1
1,330,701	+		DDA3937_RS05910	0.25	-0.0
1,330,785	+		DDA3937_RS05910	0.31	+0.5
1,330,786	-		DDA3937_RS05910	0.31	-0.0
1,330,791	+		DDA3937_RS05910	0.31	-0.3
1,330,792	-		DDA3937_RS05910	0.32	+0.1
1,330,792	-		DDA3937_RS05910	0.32	+0.5
1,330,879	-		DDA3937_RS05910	0.38	-0.1
1,330,880	+		DDA3937_RS05910	0.38	-0.3
1,330,880	+		DDA3937_RS05910	0.38	+0.4
1,330,881	-		DDA3937_RS05910	0.38	-0.1
1,330,881	-		DDA3937_RS05910	0.38	+0.3
1,330,881	-		DDA3937_RS05910	0.38	-0.3
1,331,056	+				+0.3
1,331,237	+		DDA3937_RS05910	0.65	+0.7
1,331,237	+		DDA3937_RS05910	0.65	+1.3
1,331,256	+		DDA3937_RS05910	0.66	-2.3
1,331,256	+		DDA3937_RS05910	0.66	-1.3
1,331,257	-		DDA3937_RS05910	0.66	+1.1
1,331,257	-		DDA3937_RS05910	0.66	-0.5
1,331,257	-		DDA3937_RS05910	0.66	+0.3
1,331,274	+		DDA3937_RS05910	0.68	+0.6
1,331,343	+		DDA3937_RS05910	0.73	-0.2
1,331,343	+		DDA3937_RS05910	0.73	+0.2
1,331,343	+		DDA3937_RS05910	0.73	-1.0
1,331,344	-		DDA3937_RS05910	0.73	+0.3
1,331,504	-		DDA3937_RS05910	0.85	+0.6
1,331,521	+		DDA3937_RS05910	0.86	+0.9
1,331,521	+		DDA3937_RS05910	0.86	-1.1
1,331,522	-		DDA3937_RS05910	0.86	-0.1
1,331,596	+				-1.1
1,331,596	+				-0.5
1,331,596	+				-1.7
1,331,596	+				+0.9
1,331,695	-				+0.3
1,331,729	+				-0.4
1,331,729	+				-0.4
1,331,729	+				-2.1
1,331,729	+				+0.3
1,331,761	-				+0.6
1,331,764	+				-0.4
1,331,765	-				+0.4
1,331,813	+				+0.2
1,331,813	+				+0.1
1,331,814	-				+1.1
1,331,814	-				+0.7
1,331,839	+				-0.5
1,331,876	+				-0.5
1,331,876	+				-1.1
1,331,876	+				-1.0
1,331,876	+				+0.1
1,331,877	-				-0.7
1,331,877	-				+0.0
1,331,883	-				+0.0
1,331,883	-				+0.1
1,331,883	-				-0.2
1,332,029	-		DDA3937_RS05915	0.14	-1.1
1,332,071	+				-0.3
1,332,107	-		DDA3937_RS05915	0.18	-0.1
1,332,203	+		DDA3937_RS05915	0.24	-0.1
1,332,204	-		DDA3937_RS05915	0.24	-0.2
1,332,204	-		DDA3937_RS05915	0.24	-0.3
1,332,204	-		DDA3937_RS05915	0.24	+0.4
1,332,208	+		DDA3937_RS05915	0.24	-1.6
1,332,209	-		DDA3937_RS05915	0.24	+0.8
1,332,227	+		DDA3937_RS05915	0.25	-0.2
1,332,228	-		DDA3937_RS05915	0.25	-1.0
1,332,228	-		DDA3937_RS05915	0.25	-0.3
1,332,228	-		DDA3937_RS05915	0.25	-0.2
1,332,325	-		DDA3937_RS05915	0.31	-0.4
1,332,325	-		DDA3937_RS05915	0.31	-1.1
1,332,325	-		DDA3937_RS05915	0.31	+0.2