Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04980

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,114,593	-		DDA3937_RS04970	0.23	+0.2
1,114,646	-		DDA3937_RS04970	0.32	+1.2
1,114,753	-		DDA3937_RS04970	0.50	-0.0
1,114,816	-		DDA3937_RS04970	0.60	-0.3
1,115,018	+				+0.0
1,115,019	-				-0.6
1,115,040	+				+0.2
1,115,040	+				-1.5
1,115,040	+				+0.6
1,115,040	+				+0.2
1,115,040	+				-0.9
1,115,041	-				-0.2
1,115,041	-				+0.4
1,115,041	-				+1.0
1,115,041	-				-1.3
1,115,041	-				-0.2
1,115,041	-				+0.4
1,115,041	-				-1.4
1,115,070	-				+0.0
1,115,070	-				+1.4
1,115,070	-				-0.6
1,115,079	-				+1.0
1,115,108	+				+0.9
1,115,108	+				+0.7
1,115,108	+				-0.0
1,115,279	+		DDA3937_RS04975	0.48	-0.4
1,115,295	+		DDA3937_RS04975	0.52	-0.2
1,115,295	+		DDA3937_RS04975	0.52	-0.4
1,115,295	+		DDA3937_RS04975	0.52	+0.3
1,115,296	-		DDA3937_RS04975	0.53	-0.8
1,115,349	+		DDA3937_RS04975	0.66	+0.2
1,115,371	+		DDA3937_RS04975	0.71	-0.5
1,115,372	-		DDA3937_RS04975	0.71	-0.2
1,115,388	-		DDA3937_RS04975	0.75	-1.9
1,115,582	+		DDA3937_RS04980	0.32	-0.0
1,115,582	+		DDA3937_RS04980	0.32	+0.6
1,115,583	-		DDA3937_RS04980	0.32	+1.1
1,115,592	+		DDA3937_RS04980	0.34	+0.3
1,115,592	+		DDA3937_RS04980	0.34	-0.3
1,115,592	+		DDA3937_RS04980	0.34	+0.4
1,115,593	-		DDA3937_RS04980	0.35	-0.8
1,115,838	+				-0.8
1,115,838	+				-1.6
1,115,866	-				-0.0
1,115,875	+				-0.1
1,115,875	+				+0.4
1,115,875	+				+0.8
1,115,875	+				+0.4
1,115,876	-				+0.1
1,115,876	-				-0.4
1,115,876	-				+0.7
1,115,911	+				-0.4
1,115,912	-				+0.1
1,116,050	-				-0.1
1,116,060	+				+0.8
1,116,060	+				+0.4
1,116,060	+				+0.5
1,116,060	+				-1.5
1,116,060	+				+1.3
1,116,061	-				-0.6
1,116,282	-		DDA3937_RS04985	0.13	-0.3
1,116,402	+		DDA3937_RS04985	0.17	-0.3
1,116,402	+		DDA3937_RS04985	0.17	-0.1
1,116,402	+		DDA3937_RS04985	0.17	-0.5
1,116,402	+		DDA3937_RS04985	0.17	-0.1
1,116,403	-		DDA3937_RS04985	0.17	-0.8
1,116,403	-		DDA3937_RS04985	0.17	+0.3
1,116,406	+		DDA3937_RS04985	0.17	-0.2
1,116,406	+		DDA3937_RS04985	0.17	-0.6
1,116,406	+		DDA3937_RS04985	0.17	-0.5
1,116,406	+		DDA3937_RS04985	0.17	-0.7
1,116,406	+		DDA3937_RS04985	0.17	+1.0
1,116,406	+		DDA3937_RS04985	0.17	-0.6
1,116,406	+		DDA3937_RS04985	0.17	-0.8
1,116,406	+		DDA3937_RS04985	0.17	-1.7
1,116,406	+		DDA3937_RS04985	0.17	-0.0
1,116,407	-		DDA3937_RS04985	0.18	-1.1
1,116,407	-		DDA3937_RS04985	0.18	-0.2
1,116,407	-		DDA3937_RS04985	0.18	+0.2
1,116,407	-		DDA3937_RS04985	0.18	-0.6
1,116,461	-		DDA3937_RS04985	0.19	+1.7
1,116,529	+		DDA3937_RS04985	0.22	-0.0
1,116,530	-		DDA3937_RS04985	0.22	+0.0
1,116,566	+		DDA3937_RS04985	0.23	-0.3
1,116,566	+		DDA3937_RS04985	0.23	-1.8
1,116,567	-		DDA3937_RS04985	0.23	+0.4
1,116,567	-		DDA3937_RS04985	0.23	-0.3
1,116,567	-		DDA3937_RS04985	0.23	+0.6
1,116,567	-		DDA3937_RS04985	0.23	-1.1
1,116,599	+		DDA3937_RS04985	0.24	+0.9
1,116,699	+		DDA3937_RS04985	0.28	-1.2
1,116,734	+		DDA3937_RS04985	0.29	+0.5
1,116,734	+		DDA3937_RS04985	0.29	+0.0
1,116,734	+		DDA3937_RS04985	0.29	+0.9
1,116,735	-		DDA3937_RS04985	0.29	-0.5
1,116,735	-		DDA3937_RS04985	0.29	+0.0
1,116,735	-		DDA3937_RS04985	0.29	-0.0
1,116,771	-		DDA3937_RS04985	0.30	-1.6
1,116,785	-		DDA3937_RS04985	0.31	+0.4
1,116,785	-		DDA3937_RS04985	0.31	-0.1
1,116,821	+		DDA3937_RS04985	0.32	+0.0
1,116,821	+		DDA3937_RS04985	0.32	-1.3
1,116,821	+		DDA3937_RS04985	0.32	+1.1
1,116,821	+		DDA3937_RS04985	0.32	+0.4
1,116,821	+		DDA3937_RS04985	0.32	-0.8
1,116,821	+		DDA3937_RS04985	0.32	+0.2
1,116,821	+		DDA3937_RS04985	0.32	-0.6
1,116,821	+		DDA3937_RS04985	0.32	+0.2
1,116,821	+		DDA3937_RS04985	0.32	-0.8
1,116,821	+		DDA3937_RS04985	0.32	-0.2
1,116,821	+		DDA3937_RS04985	0.32	+0.4
1,116,822	-		DDA3937_RS04985	0.32	+0.1
1,116,822	-		DDA3937_RS04985	0.32	-2.5
1,116,822	-		DDA3937_RS04985	0.32	-0.4
1,116,822	-		DDA3937_RS04985	0.32	+0.7
1,116,822	-		DDA3937_RS04985	0.32	+0.1
1,116,822	-				-0.4
1,116,822	-		DDA3937_RS04985	0.32	-0.5
1,116,822	-		DDA3937_RS04985	0.32	+0.1
1,116,822	-		DDA3937_RS04985	0.32	-0.1
1,116,830	+		DDA3937_RS04985	0.32	-0.4
1,116,830	+		DDA3937_RS04985	0.32	-0.6
1,116,831	-		DDA3937_RS04985	0.32	+0.4
1,116,831	-		DDA3937_RS04985	0.32	+0.3