Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04490 and DDA3937_RS04495 are separated by 162 nucleotides DDA3937_RS04495 and DDA3937_RS04500 are separated by 222 nucleotides
DDA3937_RS04490: DDA3937_RS04490 - cysteine synthase A, at 991,743 to 992,711
_RS04490
DDA3937_RS04495: DDA3937_RS04495 - sulfate transporter CysZ, at 992,874 to 993,644
_RS04495
DDA3937_RS04500: DDA3937_RS04500 - cell division protein ZipA, at 993,867 to 994,793
_RS04500
Position (kb) 992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 992.149 kb on + strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.299 kb on + strand, within DDA3937_RS04490 at 992.453 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.499 kb on - strand, within DDA3937_RS04490 at 992.699 kb on - strand at 992.705 kb on + strand at 992.705 kb on + strand at 992.711 kb on + strand at 992.722 kb on + strand at 992.725 kb on + strand at 992.725 kb on + strand at 992.726 kb on - strand at 992.726 kb on - strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.761 kb on - strand at 992.804 kb on + strand at 992.834 kb on - strand at 992.841 kb on + strand at 992.841 kb on + strand at 992.842 kb on - strand at 992.842 kb on - strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.967 kb on - strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.186 kb on + strand, within DDA3937_RS04495 at 993.193 kb on - strand, within DDA3937_RS04495 at 993.201 kb on + strand, within DDA3937_RS04495 at 993.202 kb on - strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.206 kb on - strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.524 kb on + strand, within DDA3937_RS04495 at 993.525 kb on - strand, within DDA3937_RS04495 at 993.598 kb on + strand at 993.598 kb on + strand at 993.598 kb on + strand at 993.599 kb on - strand at 993.637 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.667 kb on - strand at 993.667 kb on - strand at 993.685 kb on + strand at 993.708 kb on + strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.760 kb on - strand at 993.760 kb on - strand at 993.762 kb on + strand at 993.763 kb on - strand at 993.767 kb on + strand at 993.772 kb on + strand at 993.795 kb on + strand at 993.813 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.825 kb on + strand at 993.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 992,149 + DDA3937_RS04490 0.42 +0.7 992,150 - DDA3937_RS04490 0.42 +0.2 992,150 - DDA3937_RS04490 0.42 -0.6 992,150 - DDA3937_RS04490 0.42 +1.0 992,150 - DDA3937_RS04490 0.42 -0.2 992,299 + DDA3937_RS04490 0.57 -0.3 992,453 + DDA3937_RS04490 0.73 +0.8 992,476 + DDA3937_RS04490 0.76 -0.6 992,476 + DDA3937_RS04490 0.76 +0.4 992,477 - DDA3937_RS04490 0.76 +0.6 992,477 - DDA3937_RS04490 0.76 +0.0 992,499 - DDA3937_RS04490 0.78 +1.3 992,699 - +1.2 992,705 + -0.6 992,705 + +1.2 992,711 + +1.1 992,722 + -2.8 992,725 + -0.3 992,725 + +0.8 992,726 - +0.7 992,726 - +0.4 992,760 + +1.4 992,760 + +1.0 992,760 + +1.2 992,761 - -0.6 992,804 + +0.4 992,834 - -0.7 992,841 + -2.8 992,841 + +1.0 992,842 - +0.6 992,842 - -1.2 992,843 + +0.5 992,843 + -0.1 992,843 + +0.5 992,844 - +0.1 992,844 - +1.0 992,844 - -0.7 992,850 + +0.8 992,850 + +0.4 992,850 + +0.3 992,850 + -0.8 992,850 + +0.8 992,850 + -0.3 992,850 + +0.5 992,966 + DDA3937_RS04495 0.12 +0.4 992,966 + DDA3937_RS04495 0.12 -0.6 992,966 + DDA3937_RS04495 0.12 -0.8 992,967 - DDA3937_RS04495 0.12 +1.8 993,012 + DDA3937_RS04495 0.18 -0.8 993,012 + DDA3937_RS04495 0.18 -1.2 993,013 - DDA3937_RS04495 0.18 +0.1 993,013 - DDA3937_RS04495 0.18 -0.4 993,186 + DDA3937_RS04495 0.40 +0.5 993,193 - DDA3937_RS04495 0.41 -0.4 993,201 + DDA3937_RS04495 0.42 -1.9 993,202 - DDA3937_RS04495 0.43 -0.7 993,205 + DDA3937_RS04495 0.43 -0.2 993,205 + DDA3937_RS04495 0.43 -1.9 993,205 + DDA3937_RS04495 0.43 -0.1 993,206 - DDA3937_RS04495 0.43 +1.4 993,421 + DDA3937_RS04495 0.71 -0.7 993,421 + DDA3937_RS04495 0.71 +0.8 993,524 + DDA3937_RS04495 0.84 -1.1 993,525 - DDA3937_RS04495 0.84 -1.0 993,598 + -1.0 993,598 + +0.4 993,598 + -1.3 993,599 - +0.7 993,637 + +0.9 993,661 + -2.2 993,661 + -1.9 993,661 + -0.4 993,661 + -0.2 993,662 - +1.0 993,662 - +0.4 993,662 - -1.2 993,667 - +0.8 993,667 - +0.8 993,685 + +0.6 993,708 + +0.2 993,709 - +1.1 993,709 - -1.3 993,709 - +0.4 993,760 - -0.2 993,760 - -1.6 993,762 + -0.2 993,763 - -0.3 993,767 + -1.7 993,772 + -1.7 993,795 + -0.7 993,813 + +0.1 993,819 + -2.4 993,819 + +0.1 993,819 + -3.6 993,819 + -1.9 993,819 + -2.7 993,819 + +0.4 993,819 + -1.9 993,819 + -0.9 993,825 + -2.4 993,845 + -2.9
Or see this region's nucleotide sequence