Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03760 and DDA3937_RS03765 are separated by 246 nucleotides DDA3937_RS03765 and DDA3937_RS21865 are separated by 52 nucleotides DDA3937_RS21865 and DDA3937_RS03775 are separated by 568 nucleotides
DDA3937_RS03760: DDA3937_RS03760 - o-succinylbenzoate synthase, at 833,154 to 834,266
_RS03760
DDA3937_RS03765: DDA3937_RS03765 - nucleoside recognition family protein, at 834,513 to 835,445
_RS03765
DDA3937_RS21865: DDA3937_RS21865 - zinc-ribbon domain-containing protein, at 835,498 to 835,770
_RS21865
DDA3937_RS03775: DDA3937_RS03775 - transporter substrate-binding domain-containing protein, at 836,339 to 837,121
_RS03775
Position (kb) 834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 833.557 kb on + strand, within DDA3937_RS03760 at 833.558 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.670 kb on + strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand at 833.705 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.775 kb on + strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.836 kb on + strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.936 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.048 kb on - strand, within DDA3937_RS03760 at 834.225 kb on + strand at 834.226 kb on - strand at 834.226 kb on - strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.241 kb on - strand at 834.241 kb on - strand at 834.264 kb on + strand at 834.265 kb on - strand at 834.305 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.322 kb on - strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.692 kb on + strand, within DDA3937_RS03765 at 834.693 kb on - strand, within DDA3937_RS03765 at 834.792 kb on - strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.839 kb on - strand at 834.839 kb on - strand, within DDA3937_RS03765 at 834.839 kb on - strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.889 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.028 kb on + strand, within DDA3937_RS03765 at 835.088 kb on + strand, within DDA3937_RS03765 at 835.172 kb on + strand at 835.173 kb on - strand, within DDA3937_RS03765 at 835.173 kb on - strand, within DDA3937_RS03765 at 835.230 kb on + strand, within DDA3937_RS03765 at 835.310 kb on - strand, within DDA3937_RS03765 at 835.496 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.547 kb on - strand, within DDA3937_RS21865 at 835.764 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.770 kb on + strand at 835.771 kb on - strand at 835.771 kb on - strand at 835.771 kb on - strand at 835.774 kb on + strand at 835.774 kb on + strand at 835.774 kb on + strand at 835.774 kb on + strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.775 kb on - strand at 835.823 kb on - strand at 835.862 kb on - strand at 835.862 kb on - strand at 835.862 kb on - strand at 835.865 kb on + strand at 835.865 kb on + strand at 835.866 kb on - strand at 835.866 kb on - strand at 835.870 kb on + strand at 835.871 kb on - strand at 835.883 kb on + strand at 835.883 kb on + strand at 835.884 kb on - strand at 835.884 kb on - strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.886 kb on + strand at 835.887 kb on - strand at 835.887 kb on - strand at 835.887 kb on - strand at 835.888 kb on + strand at 835.888 kb on + strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.901 kb on + strand at 835.902 kb on - strand at 835.919 kb on + strand at 835.919 kb on + strand at 835.919 kb on + strand at 835.919 kb on + strand at 835.920 kb on - strand at 835.920 kb on - strand at 835.920 kb on - strand at 835.922 kb on + strand at 835.923 kb on - strand at 836.040 kb on - strand at 836.040 kb on - strand at 836.105 kb on + strand at 836.106 kb on - strand at 836.167 kb on + strand at 836.167 kb on + strand at 836.301 kb on - strand at 836.305 kb on + strand at 836.305 kb on + strand at 836.305 kb on + strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.306 kb on - strand at 836.354 kb on + strand at 836.374 kb on - strand at 836.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 833,557 + DDA3937_RS03760 0.36 +0.2 833,558 - DDA3937_RS03760 0.36 -0.9 833,643 - DDA3937_RS03760 0.44 -0.3 833,643 - DDA3937_RS03760 0.44 -0.4 833,670 + DDA3937_RS03760 0.46 -0.3 833,671 - DDA3937_RS03760 0.46 -0.0 833,671 - DDA3937_RS03760 0.46 -1.0 833,671 - DDA3937_RS03760 0.46 +0.6 833,672 + DDA3937_RS03760 0.47 -1.7 833,672 + DDA3937_RS03760 0.47 +0.6 833,673 - DDA3937_RS03760 0.47 -0.4 833,673 - DDA3937_RS03760 0.47 +0.5 833,673 - -0.5 833,705 + DDA3937_RS03760 0.50 +0.1 833,747 + DDA3937_RS03760 0.53 -0.3 833,747 + DDA3937_RS03760 0.53 -0.8 833,775 + DDA3937_RS03760 0.56 +0.3 833,776 - DDA3937_RS03760 0.56 +1.1 833,776 - DDA3937_RS03760 0.56 +0.3 833,836 + DDA3937_RS03760 0.61 +0.9 833,837 - DDA3937_RS03760 0.61 +0.5 833,837 - DDA3937_RS03760 0.61 +0.5 833,936 + DDA3937_RS03760 0.70 +2.5 834,047 + DDA3937_RS03760 0.80 +0.0 834,047 + DDA3937_RS03760 0.80 +1.3 834,048 - DDA3937_RS03760 0.80 +0.3 834,225 + -0.1 834,226 - +0.5 834,226 - -0.5 834,240 + -0.9 834,240 + +0.9 834,240 + +0.5 834,240 + -0.9 834,241 - +0.5 834,241 - +3.6 834,264 + -0.5 834,265 - +1.3 834,305 + -0.6 834,317 + +0.4 834,317 + +1.5 834,317 + -0.0 834,318 - -0.8 834,318 - +0.1 834,318 - -1.8 834,321 + -0.4 834,321 + -0.4 834,321 + +0.2 834,321 + +0.2 834,321 + +0.4 834,321 + +0.8 834,322 - -0.6 834,338 + -0.5 834,338 + -0.8 834,338 + +0.0 834,338 + +2.5 834,339 - -1.6 834,339 - +0.2 834,339 - +0.9 834,339 - +0.2 834,479 + -0.3 834,479 + +1.1 834,479 + -0.3 834,479 + -0.8 834,480 - +2.5 834,480 - +0.9 834,480 - +0.1 834,480 - +0.5 834,480 - -0.3 834,480 - -0.4 834,510 + +0.1 834,510 + -1.1 834,510 + -0.4 834,510 + -0.1 834,510 + -0.9 834,510 + +0.2 834,511 - -0.2 834,511 - -0.1 834,511 - -2.7 834,511 - +0.1 834,511 - +0.7 834,511 - +0.6 834,511 - +0.3 834,511 - -0.1 834,570 + -0.6 834,570 + -0.9 834,570 + -2.4 834,570 + -0.4 834,571 - +0.0 834,571 - -0.8 834,571 - -2.1 834,571 - +1.1 834,572 + -1.9 834,572 + -1.2 834,572 + +0.2 834,573 - -0.1 834,573 - -0.5 834,573 - -0.4 834,573 - -0.1 834,573 - +1.8 834,573 - -1.5 834,573 - -0.3 834,692 + DDA3937_RS03765 0.19 -1.5 834,693 - DDA3937_RS03765 0.19 -0.5 834,792 - DDA3937_RS03765 0.30 +0.5 834,838 + DDA3937_RS03765 0.35 +0.3 834,838 + DDA3937_RS03765 0.35 -0.6 834,838 + DDA3937_RS03765 0.35 -1.1 834,838 + +0.5 834,838 + DDA3937_RS03765 0.35 +0.7 834,838 + DDA3937_RS03765 0.35 +0.5 834,838 + DDA3937_RS03765 0.35 -0.0 834,839 - +0.5 834,839 - DDA3937_RS03765 0.35 -1.5 834,839 - DDA3937_RS03765 0.35 +0.1 834,886 + DDA3937_RS03765 0.40 +0.7 834,886 + DDA3937_RS03765 0.40 -0.3 834,886 + DDA3937_RS03765 0.40 +0.3 834,887 - DDA3937_RS03765 0.40 -0.5 834,887 - DDA3937_RS03765 0.40 -0.1 834,889 + DDA3937_RS03765 0.40 -0.4 834,927 + DDA3937_RS03765 0.44 +0.0 834,927 + DDA3937_RS03765 0.44 -0.2 834,927 + DDA3937_RS03765 0.44 +0.8 834,927 + DDA3937_RS03765 0.44 -0.1 834,927 + DDA3937_RS03765 0.44 +0.5 834,927 + DDA3937_RS03765 0.44 +0.5 834,928 - DDA3937_RS03765 0.44 +1.3 834,928 - DDA3937_RS03765 0.44 +0.0 834,928 - DDA3937_RS03765 0.44 -1.3 834,928 - DDA3937_RS03765 0.44 +1.3 834,928 - DDA3937_RS03765 0.44 +0.5 834,928 - DDA3937_RS03765 0.44 +0.7 834,928 - DDA3937_RS03765 0.44 +0.5 835,025 + DDA3937_RS03765 0.55 +2.2 835,025 + DDA3937_RS03765 0.55 -2.5 835,026 - DDA3937_RS03765 0.55 -0.1 835,026 - DDA3937_RS03765 0.55 -0.3 835,028 + DDA3937_RS03765 0.55 +0.6 835,088 + DDA3937_RS03765 0.62 -1.1 835,172 + +0.5 835,173 - DDA3937_RS03765 0.71 -0.5 835,173 - DDA3937_RS03765 0.71 -0.4 835,230 + DDA3937_RS03765 0.77 -0.3 835,310 - DDA3937_RS03765 0.85 +0.2 835,496 + +0.0 835,496 + +0.1 835,496 + -0.3 835,547 - DDA3937_RS21865 0.18 -0.1 835,764 + -0.7 835,770 + -0.5 835,770 + +0.8 835,770 + -0.4 835,770 + +0.2 835,770 + +0.0 835,771 - +0.9 835,771 - +0.8 835,771 - -0.4 835,774 + -0.9 835,774 + +0.3 835,774 + +0.2 835,774 + -0.0 835,775 - +0.1 835,775 - -0.1 835,775 - +0.3 835,775 - -0.1 835,775 - -0.1 835,775 - +0.9 835,775 - -0.4 835,823 - +0.2 835,862 - -0.0 835,862 - +0.4 835,862 - +0.4 835,865 + +0.6 835,865 + -0.5 835,866 - -0.5 835,866 - -0.1 835,870 + -1.0 835,871 - -1.0 835,883 + +0.2 835,883 + +0.4 835,884 - -0.0 835,884 - +0.1 835,886 + +0.7 835,886 + -1.1 835,886 + +0.3 835,886 + +0.4 835,886 + -1.0 835,887 - +0.4 835,887 - +0.5 835,887 - -1.3 835,888 + +0.6 835,888 + -0.9 835,889 - -0.9 835,889 - +0.2 835,889 - -0.1 835,889 - -1.2 835,901 + -0.4 835,902 - +0.3 835,919 + +0.1 835,919 + -0.4 835,919 + -1.3 835,919 + -0.4 835,920 - +0.6 835,920 - -1.9 835,920 - +0.4 835,922 + -0.5 835,923 - -0.9 836,040 - +1.2 836,040 - -0.1 836,105 + -0.3 836,106 - +0.1 836,167 + -0.4 836,167 + -0.4 836,301 - -0.2 836,305 + -1.1 836,305 + +0.1 836,305 + -0.8 836,306 - -1.4 836,306 - -0.7 836,306 - -0.3 836,306 - -0.5 836,306 - -0.4 836,354 + -0.4 836,374 - +1.3 836,412 - +1.5
Or see this region's nucleotide sequence