Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03690 and DDA3937_RS03695 are separated by 158 nucleotides DDA3937_RS03695 and DDA3937_RS03700 are separated by 152 nucleotides DDA3937_RS03700 and DDA3937_RS03705 are separated by 138 nucleotides
DDA3937_RS03690: DDA3937_RS03690 - AAA family ATPase, at 816,783 to 817,532
_RS03690
DDA3937_RS03695: DDA3937_RS03695 - hypothetical protein, at 817,691 to 818,161
_RS03695
DDA3937_RS03700: DDA3937_RS03700 - inositol 2-dehydrogenase, at 818,314 to 819,300
_RS03700
DDA3937_RS03705: DDA3937_RS03705 - substrate-binding domain-containing protein, at 819,439 to 820,377
_RS03705
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.428 kb on - strand, within DDA3937_RS03690 at 817.445 kb on + strand, within DDA3937_RS03690 at 817.505 kb on + strand at 817.515 kb on - strand at 817.515 kb on - strand at 817.599 kb on + strand at 817.660 kb on + strand at 817.660 kb on + strand at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 818.026 kb on + strand, within DDA3937_RS03695 at 818.051 kb on + strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.069 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.246 kb on + strand at 818.247 kb on - strand at 818.272 kb on + strand at 818.273 kb on - strand at 818.273 kb on - strand at 818.309 kb on + strand at 818.310 kb on - strand at 818.320 kb on - strand at 818.399 kb on - strand at 818.445 kb on + strand, within DDA3937_RS03700 at 818.449 kb on + strand, within DDA3937_RS03700 at 818.450 kb on - strand, within DDA3937_RS03700 at 818.499 kb on - strand, within DDA3937_RS03700 at 818.754 kb on + strand, within DDA3937_RS03700 at 818.755 kb on - strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.789 kb on - strand, within DDA3937_RS03700 at 819.066 kb on + strand, within DDA3937_RS03700 at 819.157 kb on + strand, within DDA3937_RS03700 at 819.202 kb on - strand at 819.244 kb on + strand at 819.245 kb on - strand at 819.304 kb on - strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.344 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.352 kb on - strand at 819.352 kb on - strand at 819.355 kb on + strand at 819.355 kb on + strand at 819.356 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.385 kb on + strand at 819.385 kb on + strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.389 kb on + strand at 819.389 kb on + strand at 819.389 kb on + strand at 819.390 kb on - strand at 819.390 kb on - strand at 819.390 kb on - strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.414 kb on + strand at 819.414 kb on + strand at 819.414 kb on + strand at 819.415 kb on - strand at 819.415 kb on - strand at 819.415 kb on - strand at 819.424 kb on + strand at 819.425 kb on - strand at 819.425 kb on - strand at 819.528 kb on + strand at 819.528 kb on + strand at 819.529 kb on - strand at 819.534 kb on + strand, within DDA3937_RS03705 at 819.535 kb on - strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.974 kb on - strand, within DDA3937_RS03705 at 820.057 kb on - strand, within DDA3937_RS03705 at 820.275 kb on + strand, within DDA3937_RS03705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 817,428 - DDA3937_RS03690 0.86 +0.0 817,445 + DDA3937_RS03690 0.88 -0.8 817,505 + -0.1 817,515 - -0.5 817,515 - +1.1 817,599 + +0.2 817,660 + +0.3 817,660 + +0.3 817,769 + DDA3937_RS03695 0.17 -0.0 817,769 + DDA3937_RS03695 0.17 -0.5 817,769 + DDA3937_RS03695 0.17 +0.1 818,026 + DDA3937_RS03695 0.71 +0.1 818,051 + DDA3937_RS03695 0.76 -3.4 818,052 - DDA3937_RS03695 0.77 -0.3 818,052 - DDA3937_RS03695 0.77 +0.4 818,052 - DDA3937_RS03695 0.77 -0.1 818,052 - DDA3937_RS03695 0.77 +0.5 818,069 + DDA3937_RS03695 0.80 -0.6 818,086 + DDA3937_RS03695 0.84 -0.4 818,086 + DDA3937_RS03695 0.84 +0.8 818,161 + -0.1 818,161 + +0.6 818,161 + -2.3 818,161 + -0.5 818,162 - -0.5 818,162 - +0.5 818,162 - +0.1 818,162 - +0.6 818,162 - -0.3 818,162 - -0.3 818,162 - +0.8 818,246 + -0.6 818,247 - +2.6 818,272 + +0.3 818,273 - +0.2 818,273 - -1.1 818,309 + +0.5 818,310 - +0.1 818,320 - -0.1 818,399 - -1.6 818,445 + DDA3937_RS03700 0.13 -1.3 818,449 + DDA3937_RS03700 0.14 -1.1 818,450 - DDA3937_RS03700 0.14 -2.3 818,499 - DDA3937_RS03700 0.19 -1.1 818,754 + DDA3937_RS03700 0.45 -0.5 818,755 - DDA3937_RS03700 0.45 -1.1 818,788 + DDA3937_RS03700 0.48 -0.5 818,788 + DDA3937_RS03700 0.48 -0.7 818,789 - DDA3937_RS03700 0.48 -1.9 819,066 + DDA3937_RS03700 0.76 -1.1 819,157 + DDA3937_RS03700 0.85 -0.0 819,202 - -0.9 819,244 + -0.2 819,245 - -0.5 819,304 - -0.2 819,338 + -1.1 819,338 + +0.6 819,338 + -0.9 819,338 + -0.1 819,339 - -1.1 819,339 - -0.2 819,339 - -1.0 819,339 - +0.5 819,344 + +0.5 819,351 + -0.1 819,351 + +0.1 819,351 + +0.5 819,351 + -0.3 819,351 + -1.9 819,352 - -0.8 819,352 - +0.7 819,355 + +0.0 819,355 + -0.0 819,356 - +0.3 819,369 - -0.2 819,369 - -0.1 819,369 - +0.2 819,369 - -0.5 819,369 - +0.3 819,369 - -0.2 819,385 + +1.1 819,385 + -0.5 819,386 - -0.8 819,386 - -0.4 819,386 - +0.5 819,386 - -0.2 819,389 + +0.1 819,389 + +0.1 819,389 + +0.5 819,390 - +0.0 819,390 - -0.0 819,390 - +1.0 819,410 + -1.3 819,410 + -2.1 819,410 + +0.1 819,410 + +0.1 819,410 + -1.5 819,410 + +0.5 819,410 + +0.5 819,411 - -0.5 819,411 - -0.5 819,411 - -0.1 819,411 - +1.0 819,411 - +1.7 819,411 - +0.1 819,411 - -0.5 819,411 - -1.1 819,411 - +0.3 819,414 + +1.3 819,414 + -0.1 819,414 + +0.7 819,415 - -2.7 819,415 - -0.8 819,415 - -0.1 819,424 + -1.1 819,425 - +0.1 819,425 - +0.4 819,528 + -0.1 819,528 + +0.2 819,529 - -0.3 819,534 + DDA3937_RS03705 0.10 -0.4 819,535 - DDA3937_RS03705 0.10 -0.5 819,823 + DDA3937_RS03705 0.41 -0.3 819,823 + DDA3937_RS03705 0.41 -1.2 819,823 + DDA3937_RS03705 0.41 -0.2 819,823 + DDA3937_RS03705 0.41 -0.6 819,824 - DDA3937_RS03705 0.41 -0.3 819,824 - DDA3937_RS03705 0.41 -0.2 819,824 - DDA3937_RS03705 0.41 +1.0 819,824 - DDA3937_RS03705 0.41 +1.2 819,824 - DDA3937_RS03705 0.41 -0.4 819,824 - DDA3937_RS03705 0.41 -1.1 819,824 - DDA3937_RS03705 0.41 -0.3 819,973 + DDA3937_RS03705 0.57 +0.4 819,973 + DDA3937_RS03705 0.57 +0.3 819,974 - DDA3937_RS03705 0.57 +0.2 820,057 - DDA3937_RS03705 0.66 +0.1 820,275 + DDA3937_RS03705 0.89 -0.9
Or see this region's nucleotide sequence