Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03640

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03635 and DDA3937_RS03640 are separated by 10 nucleotidesDDA3937_RS03640 and DDA3937_RS03645 are separated by 82 nucleotides DDA3937_RS03635: DDA3937_RS03635 - aspartate aminotransferase family protein, at 801,709 to 803,079 _RS03635 DDA3937_RS03640: DDA3937_RS03640 - iron-containing alcohol dehydrogenase, at 803,090 to 804,244 _RS03640 DDA3937_RS03645: DDA3937_RS03645 - APC family permease, at 804,327 to 805,748 _RS03645 Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 802.285 kb on + strand, within DDA3937_RS03635at 802.285 kb on + strand, within DDA3937_RS03635at 802.285 kb on + strand, within DDA3937_RS03635at 802.285 kb on + strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.286 kb on - strand, within DDA3937_RS03635at 802.330 kb on + strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.331 kb on - strand, within DDA3937_RS03635at 802.508 kb on + strand, within DDA3937_RS03635at 802.508 kb on + strand, within DDA3937_RS03635at 802.509 kb on - strand, within DDA3937_RS03635at 802.570 kb on + strand, within DDA3937_RS03635at 802.571 kb on - strand, within DDA3937_RS03635at 802.591 kb on + strand, within DDA3937_RS03635at 802.592 kb on - strand, within DDA3937_RS03635at 802.592 kb on - strand, within DDA3937_RS03635at 802.625 kb on - strand, within DDA3937_RS03635at 802.625 kb on - strand, within DDA3937_RS03635at 802.625 kb on - strand, within DDA3937_RS03635at 802.638 kb on + strand, within DDA3937_RS03635at 802.638 kb on + strand, within DDA3937_RS03635at 802.639 kb on - strand, within DDA3937_RS03635at 802.642 kb on + strand, within DDA3937_RS03635at 802.764 kb on - strand, within DDA3937_RS03635at 802.764 kb on - strand, within DDA3937_RS03635at 802.825 kb on + strand, within DDA3937_RS03635at 802.870 kb on + strandat 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.871 kb on - strand, within DDA3937_RS03635at 802.873 kb on + strand, within DDA3937_RS03635at 802.873 kb on + strand, within DDA3937_RS03635at 802.873 kb on + strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.874 kb on - strand, within DDA3937_RS03635at 802.938 kb on + strand, within DDA3937_RS03635at 802.939 kb on - strand, within DDA3937_RS03635at 802.997 kb on - strandat 802.997 kb on - strandat 803.103 kb on - strandat 803.103 kb on - strandat 803.306 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.444 kb on + strand, within DDA3937_RS03640at 803.444 kb on + strand, within DDA3937_RS03640at 803.656 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.706 kb on - strandat 803.706 kb on - strand, within DDA3937_RS03640at 803.706 kb on - strand, within DDA3937_RS03640at 803.903 kb on + strand, within DDA3937_RS03640at 803.903 kb on + strand, within DDA3937_RS03640at 803.904 kb on - strand, within DDA3937_RS03640at 803.904 kb on - strand, within DDA3937_RS03640at 804.075 kb on + strand, within DDA3937_RS03640at 804.076 kb on - strand, within DDA3937_RS03640at 804.076 kb on - strand, within DDA3937_RS03640at 804.242 kb on + strandat 804.242 kb on + strandat 804.242 kb on + strandat 804.243 kb on - strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.253 kb on - strandat 804.253 kb on - strandat 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.516 kb on + strand, within DDA3937_RS03645at 804.516 kb on + strand, within DDA3937_RS03645at 804.516 kb on + strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.519 kb on - strand, within DDA3937_RS03645at 804.534 kb on + strandat 804.535 kb on - strand, within DDA3937_RS03645at 804.559 kb on - strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.627 kb on + strand, within DDA3937_RS03645at 804.627 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strandat 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.723 kb on + strand, within DDA3937_RS03645at 804.724 kb on - strand, within DDA3937_RS03645at 804.724 kb on - strand, within DDA3937_RS03645at 804.754 kb on - strand, within DDA3937_RS03645at 804.754 kb on - strand, within DDA3937_RS03645at 804.890 kb on + strand, within DDA3937_RS03645at 804.978 kb on + strand, within DDA3937_RS03645at 804.979 kb on - strand, within DDA3937_RS03645at 805.013 kb on - strand, within DDA3937_RS03645at 805.089 kb on + strand, within DDA3937_RS03645at 805.090 kb on - strand, within DDA3937_RS03645

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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802,285 + DDA3937_RS03635 0.42 +0.4
802,285 + DDA3937_RS03635 0.42 +0.6
802,285 + DDA3937_RS03635 0.42 +0.5
802,285 + DDA3937_RS03635 0.42 -2.2
802,286 - DDA3937_RS03635 0.42 -0.2
802,286 - DDA3937_RS03635 0.42 -0.2
802,286 - DDA3937_RS03635 0.42 -0.4
802,286 - DDA3937_RS03635 0.42 +2.1
802,286 - DDA3937_RS03635 0.42 +0.5
802,330 + DDA3937_RS03635 0.45 +1.5
802,331 - DDA3937_RS03635 0.45 +0.4
802,331 - DDA3937_RS03635 0.45 +0.2
802,331 - DDA3937_RS03635 0.45 +0.7
802,331 - DDA3937_RS03635 0.45 -0.4
802,508 + DDA3937_RS03635 0.58 -0.2
802,508 + DDA3937_RS03635 0.58 -0.6
802,509 - DDA3937_RS03635 0.58 -0.0
802,570 + DDA3937_RS03635 0.63 +0.2
802,571 - DDA3937_RS03635 0.63 -0.4
802,591 + DDA3937_RS03635 0.64 +0.4
802,592 - DDA3937_RS03635 0.64 +0.5
802,592 - DDA3937_RS03635 0.64 -1.0
802,625 - DDA3937_RS03635 0.67 +0.1
802,625 - DDA3937_RS03635 0.67 -0.8
802,625 - DDA3937_RS03635 0.67 -0.4
802,638 + DDA3937_RS03635 0.68 -0.1
802,638 + DDA3937_RS03635 0.68 -0.2
802,639 - DDA3937_RS03635 0.68 -1.7
802,642 + DDA3937_RS03635 0.68 -2.3
802,764 - DDA3937_RS03635 0.77 -1.7
802,764 - DDA3937_RS03635 0.77 -0.7
802,825 + DDA3937_RS03635 0.81 -0.3
802,870 + -0.1
802,871 - DDA3937_RS03635 0.85 -0.2
802,871 - DDA3937_RS03635 0.85 -0.4
802,871 - DDA3937_RS03635 0.85 -0.0
802,871 - DDA3937_RS03635 0.85 -0.3
802,871 - DDA3937_RS03635 0.85 +0.7
802,873 + DDA3937_RS03635 0.85 -1.6
802,873 + DDA3937_RS03635 0.85 -0.5
802,873 + DDA3937_RS03635 0.85 -0.5
802,874 - DDA3937_RS03635 0.85 +0.2
802,874 - DDA3937_RS03635 0.85 -0.5
802,874 - DDA3937_RS03635 0.85 -0.3
802,874 - DDA3937_RS03635 0.85 +0.1
802,938 + DDA3937_RS03635 0.90 -0.3
802,939 - DDA3937_RS03635 0.90 -0.3
802,997 - +0.4
802,997 - -1.3
803,103 - +0.5
803,103 - -0.4
803,306 - DDA3937_RS03640 0.19 +1.3
803,426 - DDA3937_RS03640 0.29 -0.4
803,426 - DDA3937_RS03640 0.29 +0.8
803,426 - DDA3937_RS03640 0.29 +0.6
803,444 + DDA3937_RS03640 0.31 -0.3
803,444 + DDA3937_RS03640 0.31 +0.6
803,656 + DDA3937_RS03640 0.49 -0.2
803,705 + DDA3937_RS03640 0.53 +1.2
803,705 + DDA3937_RS03640 0.53 +1.1
803,705 + DDA3937_RS03640 0.53 -0.5
803,706 - +2.5
803,706 - DDA3937_RS03640 0.53 +0.3
803,706 - DDA3937_RS03640 0.53 +0.1
803,903 + DDA3937_RS03640 0.70 +0.2
803,903 + DDA3937_RS03640 0.70 -0.0
803,904 - DDA3937_RS03640 0.70 +0.4
803,904 - DDA3937_RS03640 0.70 -1.1
804,075 + DDA3937_RS03640 0.85 +0.1
804,076 - DDA3937_RS03640 0.85 +0.7
804,076 - DDA3937_RS03640 0.85 -0.2
804,242 + -0.5
804,242 + -3.3
804,242 + +0.1
804,243 - +1.0
804,250 + -0.9
804,250 + -1.1
804,250 + -0.2
804,250 + +0.3
804,250 + +1.2
804,250 + -0.6
804,250 + +0.9
804,250 + -0.4
804,251 - -0.5
804,251 - -0.2
804,251 - -1.5
804,251 - -0.1
804,251 - -0.4
804,251 - +0.5
804,253 - +0.0
804,253 - -0.3
804,474 + DDA3937_RS03645 0.10 +1.5
804,474 + DDA3937_RS03645 0.10 +0.4
804,474 + DDA3937_RS03645 0.10 -0.5
804,474 + DDA3937_RS03645 0.10 -0.9
804,474 + DDA3937_RS03645 0.10 +0.1
804,474 + DDA3937_RS03645 0.10 +0.9
804,474 + DDA3937_RS03645 0.10 +0.5
804,474 + DDA3937_RS03645 0.10 -2.3
804,474 + DDA3937_RS03645 0.10 +0.9
804,474 + DDA3937_RS03645 0.10 +1.5
804,474 + DDA3937_RS03645 0.10 -0.5
804,475 - DDA3937_RS03645 0.10 +0.2
804,475 - DDA3937_RS03645 0.10 -0.9
804,475 - DDA3937_RS03645 0.10 -0.6
804,475 - DDA3937_RS03645 0.10 -0.1
804,475 - DDA3937_RS03645 0.10 +0.2
804,475 - DDA3937_RS03645 0.10 +0.5
804,475 - DDA3937_RS03645 0.10 -0.1
804,475 - DDA3937_RS03645 0.10 +0.5
804,475 - DDA3937_RS03645 0.10 -0.3
804,475 - DDA3937_RS03645 0.10 -0.2
804,475 - DDA3937_RS03645 0.10 +0.0
804,475 - DDA3937_RS03645 0.10 -0.8
804,475 - DDA3937_RS03645 0.10 -0.6
804,475 - DDA3937_RS03645 0.10 +0.5
804,475 - DDA3937_RS03645 0.10 -1.5
804,516 + DDA3937_RS03645 0.13 +0.4
804,516 + DDA3937_RS03645 0.13 +0.5
804,516 + DDA3937_RS03645 0.13 -0.2
804,517 - DDA3937_RS03645 0.13 -0.3
804,517 - DDA3937_RS03645 0.13 -0.2
804,517 - DDA3937_RS03645 0.13 +0.3
804,517 - DDA3937_RS03645 0.13 -0.3
804,519 - DDA3937_RS03645 0.14 +1.1
804,534 + +0.5
804,535 - DDA3937_RS03645 0.15 +0.3
804,559 - DDA3937_RS03645 0.16 -1.9
804,564 + DDA3937_RS03645 0.17 -0.1
804,564 + DDA3937_RS03645 0.17 +0.6
804,564 + DDA3937_RS03645 0.17 -0.7
804,564 + DDA3937_RS03645 0.17 -0.4
804,565 - DDA3937_RS03645 0.17 -0.4
804,565 - DDA3937_RS03645 0.17 -0.1
804,565 - DDA3937_RS03645 0.17 +0.0
804,565 - DDA3937_RS03645 0.17 +0.7
804,565 - DDA3937_RS03645 0.17 +0.1
804,627 + DDA3937_RS03645 0.21 -0.2
804,627 + DDA3937_RS03645 0.21 -0.1
804,681 + DDA3937_RS03645 0.25 -0.7
804,681 + DDA3937_RS03645 0.25 +1.7
804,681 + DDA3937_RS03645 0.25 -0.2
804,681 + DDA3937_RS03645 0.25 -0.4
804,681 + DDA3937_RS03645 0.25 -0.3
804,681 + DDA3937_RS03645 0.25 +0.1
804,681 + DDA3937_RS03645 0.25 -0.9
804,681 + DDA3937_RS03645 0.25 +0.9
804,681 + DDA3937_RS03645 0.25 +0.1
804,681 + DDA3937_RS03645 0.25 +0.3
804,681 + DDA3937_RS03645 0.25 -0.3
804,682 - DDA3937_RS03645 0.25 +0.3
804,682 - -0.1
804,682 - DDA3937_RS03645 0.25 -0.1
804,682 - DDA3937_RS03645 0.25 -0.8
804,682 - DDA3937_RS03645 0.25 +0.1
804,682 - DDA3937_RS03645 0.25 -0.1
804,682 - DDA3937_RS03645 0.25 -1.1
804,723 + DDA3937_RS03645 0.28 -1.7
804,724 - DDA3937_RS03645 0.28 -0.1
804,724 - DDA3937_RS03645 0.28 +1.1
804,754 - DDA3937_RS03645 0.30 -1.9
804,754 - DDA3937_RS03645 0.30 +1.5
804,890 + DDA3937_RS03645 0.40 -0.9
804,978 + DDA3937_RS03645 0.46 -0.0
804,979 - DDA3937_RS03645 0.46 -0.9
805,013 - DDA3937_RS03645 0.48 -0.0
805,089 + DDA3937_RS03645 0.54 -0.5
805,090 - DDA3937_RS03645 0.54 +1.1

Or see this region's nucleotide sequence