Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03370 and DDA3937_RS03375 are separated by 387 nucleotides DDA3937_RS03375 and DDA3937_RS03380 overlap by 1 nucleotides
DDA3937_RS03370: DDA3937_RS03370 - RelA/SpoT domain-containing protein, at 735,117 to 736,229
_RS03370
DDA3937_RS03375: DDA3937_RS03375 - efflux RND transporter periplasmic adaptor subunit, at 736,617 to 737,744
_RS03375
DDA3937_RS03380: DDA3937_RS03380 - efflux RND transporter permease subunit, at 737,744 to 740,824
_RS03380
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 735.641 kb on + strand, within DDA3937_RS03370 at 735.753 kb on - strand, within DDA3937_RS03370 at 735.754 kb on + strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.856 kb on - strand, within DDA3937_RS03370 at 735.858 kb on + strand, within DDA3937_RS03370 at 735.859 kb on - strand, within DDA3937_RS03370 at 736.172 kb on + strand at 736.173 kb on - strand at 736.191 kb on + strand at 736.196 kb on + strand at 736.224 kb on - strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.245 kb on - strand at 736.245 kb on - strand at 736.249 kb on + strand at 736.249 kb on + strand at 736.268 kb on + strand at 736.268 kb on + strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.270 kb on + strand at 736.271 kb on - strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.277 kb on - strand at 736.278 kb on + strand at 736.278 kb on + strand at 736.279 kb on - strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.326 kb on + strand at 736.327 kb on - strand at 736.327 kb on - strand at 736.354 kb on + strand at 736.376 kb on - strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.405 kb on - strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.417 kb on - strand at 736.417 kb on - strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.444 kb on - strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.459 kb on - strand at 736.459 kb on - strand at 736.473 kb on + strand at 736.474 kb on - strand at 736.517 kb on + strand at 736.517 kb on + strand at 736.518 kb on - strand at 736.581 kb on + strand at 736.582 kb on - strand at 736.625 kb on - strand at 736.680 kb on + strand at 736.690 kb on - strand at 736.690 kb on - strand at 736.827 kb on - strand, within DDA3937_RS03375 at 736.868 kb on + strand, within DDA3937_RS03375 at 736.985 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand at 737.034 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.082 kb on + strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.096 kb on + strand, within DDA3937_RS03375 at 737.097 kb on - strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.155 kb on - strand, within DDA3937_RS03375 at 737.273 kb on + strand, within DDA3937_RS03375 at 737.345 kb on + strand, within DDA3937_RS03375 at 737.351 kb on + strand, within DDA3937_RS03375 at 737.352 kb on - strand, within DDA3937_RS03375 at 737.352 kb on - strand, within DDA3937_RS03375 at 737.384 kb on + strand, within DDA3937_RS03375 at 737.384 kb on + strand, within DDA3937_RS03375 at 737.385 kb on - strand, within DDA3937_RS03375 at 737.385 kb on - strand, within DDA3937_RS03375 at 737.388 kb on - strand, within DDA3937_RS03375 at 737.390 kb on + strand, within DDA3937_RS03375 at 737.390 kb on + strand, within DDA3937_RS03375 at 737.391 kb on - strand, within DDA3937_RS03375 at 737.391 kb on - strand, within DDA3937_RS03375 at 737.391 kb on - strand, within DDA3937_RS03375 at 737.451 kb on - strand, within DDA3937_RS03375 at 737.562 kb on + strand, within DDA3937_RS03375 at 737.562 kb on + strand at 737.562 kb on + strand, within DDA3937_RS03375 at 737.564 kb on + strand, within DDA3937_RS03375 at 737.564 kb on + strand, within DDA3937_RS03375 at 737.564 kb on + strand, within DDA3937_RS03375 at 737.565 kb on - strand, within DDA3937_RS03375 at 737.565 kb on - strand, within DDA3937_RS03375 at 737.568 kb on - strand, within DDA3937_RS03375 at 737.574 kb on - strand, within DDA3937_RS03375 at 737.579 kb on + strand, within DDA3937_RS03375 at 737.579 kb on + strand, within DDA3937_RS03375 at 737.648 kb on - strand at 737.672 kb on - strand at 737.684 kb on + strand at 737.699 kb on + strand at 737.700 kb on - strand at 737.793 kb on + strand at 737.793 kb on + strand at 737.793 kb on + strand at 737.866 kb on + strand at 737.867 kb on - strand at 737.935 kb on + strand at 737.936 kb on - strand at 738.061 kb on - strand, within DDA3937_RS03380 at 738.081 kb on - strand, within DDA3937_RS03380 at 738.251 kb on - strand, within DDA3937_RS03380 at 738.338 kb on - strand, within DDA3937_RS03380 at 738.338 kb on - strand, within DDA3937_RS03380 at 738.557 kb on + strand, within DDA3937_RS03380 at 738.557 kb on + strand, within DDA3937_RS03380 at 738.557 kb on + strand, within DDA3937_RS03380 at 738.558 kb on - strand, within DDA3937_RS03380 at 738.558 kb on - strand, within DDA3937_RS03380 at 738.577 kb on + strand, within DDA3937_RS03380 at 738.588 kb on + strand, within DDA3937_RS03380 at 738.588 kb on + strand, within DDA3937_RS03380 at 738.589 kb on - strand, within DDA3937_RS03380 at 738.589 kb on - strand, within DDA3937_RS03380 at 738.589 kb on - strand, within DDA3937_RS03380 at 738.687 kb on + strand, within DDA3937_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 735,641 + DDA3937_RS03370 0.47 -0.6 735,753 - DDA3937_RS03370 0.57 +0.8 735,754 + DDA3937_RS03370 0.57 +0.3 735,755 - DDA3937_RS03370 0.57 +0.2 735,755 - DDA3937_RS03370 0.57 +0.5 735,755 - DDA3937_RS03370 0.57 +0.5 735,755 - DDA3937_RS03370 0.57 -0.6 735,825 + DDA3937_RS03370 0.64 +0.9 735,825 + DDA3937_RS03370 0.64 -0.6 735,856 - DDA3937_RS03370 0.66 +0.0 735,858 + DDA3937_RS03370 0.67 -0.4 735,859 - DDA3937_RS03370 0.67 -0.5 736,172 + +1.3 736,173 - +0.0 736,191 + -0.6 736,196 + +0.9 736,224 - -0.8 736,244 + +0.3 736,244 + +0.1 736,244 + +0.6 736,245 - +1.8 736,245 - -0.2 736,249 + -0.3 736,249 + -0.1 736,268 + -0.2 736,268 + -0.3 736,269 - +0.4 736,269 - +0.4 736,269 - -0.6 736,269 - -1.1 736,269 - +0.2 736,270 + +0.9 736,271 - -1.2 736,276 + -0.8 736,276 + +0.2 736,276 + -0.8 736,276 + -0.1 736,277 - +0.3 736,278 + -0.3 736,278 + -0.4 736,279 - +0.1 736,282 + +0.0 736,282 + -0.3 736,282 + +1.3 736,282 + -0.0 736,283 - -1.1 736,283 - -0.3 736,283 - -0.1 736,326 + +1.5 736,327 - -0.8 736,327 - -0.3 736,354 + +1.4 736,376 - +0.5 736,404 + -0.2 736,404 + +0.8 736,404 + -0.1 736,405 - -2.0 736,416 + -0.1 736,416 + -1.8 736,416 + -0.3 736,417 - +0.1 736,417 - +0.7 736,418 + -0.9 736,418 + -0.3 736,418 + -2.5 736,418 + -0.6 736,418 + -0.4 736,418 + +0.8 736,418 + +0.8 736,419 - -0.6 736,419 - +1.2 736,419 - +0.1 736,419 - -0.3 736,419 - +0.0 736,419 - +0.1 736,423 - -0.2 736,423 - +0.2 736,423 - +0.1 736,423 - -0.1 736,423 - -0.5 736,444 - -0.6 736,454 + -0.5 736,454 + +0.7 736,454 + +0.6 736,454 + -0.2 736,455 - +0.0 736,455 - -0.3 736,455 - +0.9 736,455 - -1.2 736,458 + -1.5 736,458 + -0.9 736,458 + -1.5 736,458 + +0.3 736,458 + +0.5 736,458 + -2.0 736,459 - -0.4 736,459 - -0.3 736,473 + -0.8 736,474 - -0.1 736,517 + +0.4 736,517 + -0.5 736,518 - +0.4 736,581 + +0.1 736,582 - +0.1 736,625 - -0.4 736,680 + +0.9 736,690 - -0.6 736,690 - -0.1 736,827 - DDA3937_RS03375 0.19 -0.7 736,868 + DDA3937_RS03375 0.22 -0.6 736,985 + DDA3937_RS03375 0.33 +0.3 737,034 + -1.5 737,034 + DDA3937_RS03375 0.37 -0.1 737,034 + DDA3937_RS03375 0.37 -0.7 737,035 - DDA3937_RS03375 0.37 +0.1 737,035 - DDA3937_RS03375 0.37 -0.5 737,035 - DDA3937_RS03375 0.37 +0.5 737,035 - DDA3937_RS03375 0.37 +0.5 737,036 + DDA3937_RS03375 0.37 -0.5 737,036 + DDA3937_RS03375 0.37 -0.5 737,082 + DDA3937_RS03375 0.41 -1.2 737,083 - DDA3937_RS03375 0.41 +0.7 737,083 - DDA3937_RS03375 0.41 +0.2 737,096 + DDA3937_RS03375 0.42 -0.3 737,097 - DDA3937_RS03375 0.43 -0.2 737,144 + DDA3937_RS03375 0.47 -0.8 737,144 + DDA3937_RS03375 0.47 -1.1 737,144 + DDA3937_RS03375 0.47 -0.4 737,155 - DDA3937_RS03375 0.48 -0.3 737,273 + DDA3937_RS03375 0.58 +0.5 737,345 + DDA3937_RS03375 0.65 +0.6 737,351 + DDA3937_RS03375 0.65 -1.8 737,352 - DDA3937_RS03375 0.65 +2.7 737,352 - DDA3937_RS03375 0.65 +0.9 737,384 + DDA3937_RS03375 0.68 -0.7 737,384 + DDA3937_RS03375 0.68 -0.8 737,385 - DDA3937_RS03375 0.68 -1.8 737,385 - DDA3937_RS03375 0.68 -0.8 737,388 - DDA3937_RS03375 0.68 +0.3 737,390 + DDA3937_RS03375 0.69 -0.2 737,390 + DDA3937_RS03375 0.69 -0.2 737,391 - DDA3937_RS03375 0.69 -0.1 737,391 - DDA3937_RS03375 0.69 +0.3 737,391 - DDA3937_RS03375 0.69 -0.1 737,451 - DDA3937_RS03375 0.74 +0.3 737,562 + DDA3937_RS03375 0.84 -0.5 737,562 + -0.1 737,562 + DDA3937_RS03375 0.84 -0.5 737,564 + DDA3937_RS03375 0.84 -0.4 737,564 + DDA3937_RS03375 0.84 -0.7 737,564 + DDA3937_RS03375 0.84 -0.2 737,565 - DDA3937_RS03375 0.84 -0.6 737,565 - DDA3937_RS03375 0.84 +0.1 737,568 - DDA3937_RS03375 0.84 -0.4 737,574 - DDA3937_RS03375 0.85 +0.5 737,579 + DDA3937_RS03375 0.85 -0.2 737,579 + DDA3937_RS03375 0.85 -0.5 737,648 - -0.3 737,672 - -1.6 737,684 + -0.4 737,699 + -1.8 737,700 - +0.9 737,793 + +0.5 737,793 + -0.1 737,793 + -0.3 737,866 + -1.1 737,867 - -0.5 737,935 + -0.2 737,936 - +0.7 738,061 - DDA3937_RS03380 0.10 +0.5 738,081 - DDA3937_RS03380 0.11 +0.1 738,251 - DDA3937_RS03380 0.16 -0.4 738,338 - DDA3937_RS03380 0.19 -0.8 738,338 - DDA3937_RS03380 0.19 +0.1 738,557 + DDA3937_RS03380 0.26 +0.1 738,557 + DDA3937_RS03380 0.26 -0.1 738,557 + DDA3937_RS03380 0.26 -0.5 738,558 - DDA3937_RS03380 0.26 -0.3 738,558 - DDA3937_RS03380 0.26 -0.1 738,577 + DDA3937_RS03380 0.27 +0.3 738,588 + DDA3937_RS03380 0.27 -0.0 738,588 + DDA3937_RS03380 0.27 -1.7 738,589 - DDA3937_RS03380 0.27 +0.3 738,589 - DDA3937_RS03380 0.27 -0.2 738,589 - DDA3937_RS03380 0.27 -0.7 738,687 + DDA3937_RS03380 0.31 -0.2
Or see this region's nucleotide sequence