Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03245 and DDA3937_RS03250 are separated by 31 nucleotides DDA3937_RS03250 and DDA3937_RS03255 are separated by 112 nucleotides DDA3937_RS03255 and DDA3937_RS03260 are separated by 188 nucleotides DDA3937_RS03260 and DDA3937_RS03265 are separated by 69 nucleotides
DDA3937_RS03245: DDA3937_RS03245 - glycine cleavage system aminomethyltransferase GcvT, at 709,309 to 710,409
_RS03245
DDA3937_RS03250: DDA3937_RS03250 - glycine cleavage system protein GcvH, at 710,441 to 710,848
_RS03250
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
DDA3937_RS03260: DDA3937_RS03260 - LysE family translocator, at 714,023 to 714,673
_RS03260
DDA3937_RS03265: DDA3937_RS03265 - HD domain-containing protein, at 714,743 to 715,351
_RS03265
Position (kb) 710
711
712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.215 kb on - strand, within DDA3937_RS03245 at 710.281 kb on - strand, within DDA3937_RS03245 at 710.323 kb on - strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.471 kb on - strand at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.673 kb on + strand, within DDA3937_RS03250 at 710.674 kb on - strand at 710.847 kb on - strand at 710.847 kb on - strand at 710.904 kb on + strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 711.014 kb on + strand at 711.014 kb on + strand at 711.083 kb on + strand at 711.083 kb on + strand at 711.084 kb on - strand at 711.084 kb on - strand at 711.153 kb on + strand at 711.153 kb on + strand at 711.211 kb on - strand at 711.225 kb on + strand at 711.226 kb on - strand at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.604 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.838 kb on - strand, within DDA3937_RS03255 at 711.966 kb on - strand, within DDA3937_RS03255 at 711.966 kb on - strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.002 kb on + strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.003 kb on - strand, within DDA3937_RS03255 at 712.011 kb on + strand, within DDA3937_RS03255 at 712.011 kb on + strand, within DDA3937_RS03255 at 712.012 kb on - strand, within DDA3937_RS03255 at 712.050 kb on - strand, within DDA3937_RS03255 at 712.276 kb on + strand, within DDA3937_RS03255 at 712.558 kb on + strand, within DDA3937_RS03255 at 712.558 kb on + strand, within DDA3937_RS03255 at 712.559 kb on - strand, within DDA3937_RS03255 at 712.559 kb on - strand, within DDA3937_RS03255 at 712.644 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.658 kb on + strand, within DDA3937_RS03255 at 712.659 kb on - strand, within DDA3937_RS03255 at 712.659 kb on - strand, within DDA3937_RS03255 at 712.659 kb on - strand, within DDA3937_RS03255 at 712.690 kb on - strand, within DDA3937_RS03255 at 712.917 kb on + strand, within DDA3937_RS03255 at 712.917 kb on + strand, within DDA3937_RS03255 at 712.938 kb on + strand, within DDA3937_RS03255 at 712.938 kb on + strand, within DDA3937_RS03255 at 712.938 kb on + strand, within DDA3937_RS03255 at 712.939 kb on - strand, within DDA3937_RS03255 at 712.939 kb on - strand, within DDA3937_RS03255 at 712.939 kb on - strand, within DDA3937_RS03255 at 712.993 kb on + strand, within DDA3937_RS03255 at 712.993 kb on + strand, within DDA3937_RS03255 at 712.993 kb on + strand, within DDA3937_RS03255 at 712.994 kb on - strand, within DDA3937_RS03255 at 712.994 kb on - strand at 712.994 kb on - strand, within DDA3937_RS03255 at 712.996 kb on - strand, within DDA3937_RS03255 at 713.033 kb on + strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.243 kb on + strand, within DDA3937_RS03255 at 713.265 kb on + strand, within DDA3937_RS03255 at 713.265 kb on + strand, within DDA3937_RS03255 at 713.266 kb on - strand, within DDA3937_RS03255 at 713.266 kb on - strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.332 kb on - strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.703 kb on + strand at 713.704 kb on - strand at 713.749 kb on - strand at 713.792 kb on + strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.827 kb on - strand at 713.827 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.833 kb on - strand at 713.845 kb on + strand at 713.846 kb on - strand at 713.846 kb on - strand at 713.857 kb on - strand at 713.857 kb on - strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.952 kb on - strand at 713.952 kb on - strand at 714.027 kb on + strand at 714.040 kb on + strand at 714.041 kb on - strand at 714.041 kb on - strand at 714.053 kb on - strand at 714.106 kb on + strand, within DDA3937_RS03260 at 714.107 kb on - strand, within DDA3937_RS03260 at 714.242 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.278 kb on + strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.280 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.409 kb on - strand at 714.409 kb on - strand, within DDA3937_RS03260 at 714.409 kb on - strand, within DDA3937_RS03260 at 714.610 kb on + strand at 714.610 kb on + strand at 714.610 kb on + strand at 714.611 kb on - strand at 714.631 kb on + strand at 714.631 kb on + strand at 714.632 kb on - strand at 714.745 kb on - strand at 714.792 kb on + strand at 714.793 kb on - strand at 714.814 kb on + strand, within DDA3937_RS03265 at 714.814 kb on + strand, within DDA3937_RS03265 at 714.824 kb on - strand, within DDA3937_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 710,139 + DDA3937_RS03245 0.75 +0.2 710,139 + DDA3937_RS03245 0.75 -1.2 710,140 - DDA3937_RS03245 0.75 -0.5 710,140 - DDA3937_RS03245 0.75 -0.1 710,215 - DDA3937_RS03245 0.82 -0.1 710,281 - DDA3937_RS03245 0.88 -0.5 710,323 - +0.0 710,468 + -0.3 710,468 + +0.1 710,468 + +1.4 710,469 - +0.8 710,469 - +0.4 710,469 - +0.0 710,469 - -0.1 710,469 - +1.5 710,469 - -1.3 710,469 - +0.1 710,469 - +0.8 710,469 - +0.2 710,470 + -0.8 710,470 + +0.5 710,470 + +2.5 710,470 + -0.1 710,470 + -1.5 710,471 - -0.5 710,652 - DDA3937_RS03250 0.52 +0.0 710,652 - DDA3937_RS03250 0.52 -0.5 710,652 - DDA3937_RS03250 0.52 +0.2 710,673 + DDA3937_RS03250 0.57 +0.8 710,674 - +1.1 710,847 - +0.0 710,847 - -0.5 710,904 + -0.4 710,905 - -1.1 710,905 - -0.1 710,905 - +0.0 710,905 - +0.5 710,905 - -0.2 711,014 + -0.6 711,014 + -0.3 711,083 + -0.3 711,083 + -0.6 711,084 - +1.7 711,084 - +0.8 711,153 + -0.4 711,153 + -0.5 711,211 - -0.3 711,225 + -0.7 711,226 - +0.3 711,285 + DDA3937_RS03255 0.11 +0.0 711,285 + DDA3937_RS03255 0.11 +0.1 711,285 + DDA3937_RS03255 0.11 -1.0 711,286 - DDA3937_RS03255 0.11 +1.0 711,286 - DDA3937_RS03255 0.11 +0.8 711,286 - DDA3937_RS03255 0.11 +1.0 711,296 + DDA3937_RS03255 0.12 -0.0 711,296 + DDA3937_RS03255 0.12 +0.6 711,297 - DDA3937_RS03255 0.12 +0.5 711,297 - DDA3937_RS03255 0.12 -0.1 711,585 + DDA3937_RS03255 0.22 -0.0 711,585 + DDA3937_RS03255 0.22 -0.7 711,585 + DDA3937_RS03255 0.22 -0.9 711,586 - DDA3937_RS03255 0.22 -0.4 711,586 - DDA3937_RS03255 0.22 +0.6 711,604 + DDA3937_RS03255 0.22 +0.2 711,752 + DDA3937_RS03255 0.28 +0.3 711,752 + DDA3937_RS03255 0.28 +0.3 711,757 + DDA3937_RS03255 0.28 +0.5 711,757 + DDA3937_RS03255 0.28 -0.5 711,757 + DDA3937_RS03255 0.28 +0.3 711,758 - DDA3937_RS03255 0.28 +0.1 711,758 - DDA3937_RS03255 0.28 +0.1 711,838 - DDA3937_RS03255 0.31 +0.5 711,966 - DDA3937_RS03255 0.35 +0.1 711,966 - DDA3937_RS03255 0.35 +0.3 712,002 + DDA3937_RS03255 0.36 -0.8 712,002 + DDA3937_RS03255 0.36 +0.1 712,002 + DDA3937_RS03255 0.36 +1.0 712,002 + DDA3937_RS03255 0.36 -1.5 712,002 + DDA3937_RS03255 0.36 -0.5 712,002 + DDA3937_RS03255 0.36 +0.8 712,003 - DDA3937_RS03255 0.36 -0.1 712,003 - DDA3937_RS03255 0.36 -0.7 712,003 - DDA3937_RS03255 0.36 -2.1 712,003 - DDA3937_RS03255 0.36 +0.5 712,011 + DDA3937_RS03255 0.37 +0.5 712,011 + DDA3937_RS03255 0.37 +1.2 712,012 - DDA3937_RS03255 0.37 +1.3 712,050 - DDA3937_RS03255 0.38 +1.2 712,276 + DDA3937_RS03255 0.46 -1.1 712,558 + DDA3937_RS03255 0.56 -0.3 712,558 + DDA3937_RS03255 0.56 +0.1 712,559 - DDA3937_RS03255 0.56 +0.2 712,559 - DDA3937_RS03255 0.56 +0.1 712,644 + DDA3937_RS03255 0.59 -0.4 712,658 + DDA3937_RS03255 0.59 -0.1 712,658 + DDA3937_RS03255 0.59 +0.2 712,658 + DDA3937_RS03255 0.59 +0.3 712,658 + DDA3937_RS03255 0.59 -0.4 712,659 - DDA3937_RS03255 0.59 +0.3 712,659 - DDA3937_RS03255 0.59 +0.5 712,659 - DDA3937_RS03255 0.59 +0.5 712,690 - DDA3937_RS03255 0.60 -2.1 712,917 + DDA3937_RS03255 0.68 +0.7 712,917 + DDA3937_RS03255 0.68 -0.3 712,938 + DDA3937_RS03255 0.69 -1.7 712,938 + DDA3937_RS03255 0.69 -1.3 712,938 + DDA3937_RS03255 0.69 +0.9 712,939 - DDA3937_RS03255 0.69 -0.1 712,939 - DDA3937_RS03255 0.69 +0.0 712,939 - DDA3937_RS03255 0.69 +1.4 712,993 + DDA3937_RS03255 0.71 -0.8 712,993 + DDA3937_RS03255 0.71 +0.4 712,993 + DDA3937_RS03255 0.71 +1.0 712,994 - DDA3937_RS03255 0.71 +0.1 712,994 - -0.5 712,994 - DDA3937_RS03255 0.71 -0.3 712,996 - DDA3937_RS03255 0.71 -0.2 713,033 + DDA3937_RS03255 0.72 -0.4 713,034 - DDA3937_RS03255 0.72 -0.2 713,034 - DDA3937_RS03255 0.72 +0.3 713,034 - DDA3937_RS03255 0.72 -0.2 713,243 + DDA3937_RS03255 0.79 +1.2 713,265 + DDA3937_RS03255 0.80 +1.6 713,265 + DDA3937_RS03255 0.80 -0.1 713,266 - DDA3937_RS03255 0.80 -0.4 713,266 - DDA3937_RS03255 0.80 +0.3 713,331 + DDA3937_RS03255 0.82 +0.0 713,331 + DDA3937_RS03255 0.82 +0.3 713,331 + DDA3937_RS03255 0.82 +0.6 713,331 + DDA3937_RS03255 0.82 -0.6 713,332 - DDA3937_RS03255 0.82 +0.2 713,370 + DDA3937_RS03255 0.84 +2.5 713,370 + DDA3937_RS03255 0.84 -0.3 713,370 + DDA3937_RS03255 0.84 +0.9 713,370 + DDA3937_RS03255 0.84 +0.6 713,370 + DDA3937_RS03255 0.84 -0.8 713,370 + DDA3937_RS03255 0.84 -1.2 713,371 - DDA3937_RS03255 0.84 -1.2 713,371 - DDA3937_RS03255 0.84 +0.3 713,371 - DDA3937_RS03255 0.84 +1.3 713,371 - DDA3937_RS03255 0.84 -0.5 713,371 - DDA3937_RS03255 0.84 +0.3 713,371 - DDA3937_RS03255 0.84 -0.5 713,371 - DDA3937_RS03255 0.84 -1.4 713,703 + +0.8 713,704 - -0.7 713,749 - +1.5 713,792 + +1.0 713,793 - -0.6 713,793 - -0.1 713,793 - +0.3 713,827 - -1.3 713,827 - -1.5 713,832 + +0.1 713,832 + -0.8 713,833 - -0.1 713,833 - -0.4 713,845 + -1.8 713,846 - -0.2 713,846 - -0.8 713,857 - +0.2 713,857 - +0.2 713,951 + +0.1 713,951 + -0.5 713,951 + +1.1 713,951 + -0.7 713,951 + +0.1 713,951 + +0.7 713,952 - +0.8 713,952 - +0.7 714,027 + -1.1 714,040 + +0.5 714,041 - +1.3 714,041 - +0.5 714,053 - +0.2 714,106 + DDA3937_RS03260 0.13 -0.9 714,107 - DDA3937_RS03260 0.13 -0.6 714,242 - DDA3937_RS03260 0.34 -1.3 714,270 - DDA3937_RS03260 0.38 +1.3 714,270 - DDA3937_RS03260 0.38 +0.2 714,278 + DDA3937_RS03260 0.39 -0.1 714,279 - DDA3937_RS03260 0.39 +0.0 714,279 - DDA3937_RS03260 0.39 +1.2 714,279 - DDA3937_RS03260 0.39 +0.8 714,279 - DDA3937_RS03260 0.39 +0.5 714,280 + DDA3937_RS03260 0.39 -1.0 714,408 + DDA3937_RS03260 0.59 -0.3 714,408 + DDA3937_RS03260 0.59 -1.3 714,409 - -0.5 714,409 - DDA3937_RS03260 0.59 -0.6 714,409 - DDA3937_RS03260 0.59 +0.1 714,610 + -0.8 714,610 + -0.3 714,610 + +0.2 714,611 - -0.5 714,631 + +0.6 714,631 + -0.2 714,632 - -0.7 714,745 - -0.1 714,792 + -1.9 714,793 - -0.5 714,814 + DDA3937_RS03265 0.12 +1.0 714,814 + DDA3937_RS03265 0.12 -0.5 714,824 - DDA3937_RS03265 0.13 -2.8
Or see this region's nucleotide sequence