Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03225 and DDA3937_RS03230 are separated by 111 nucleotides DDA3937_RS03230 and DDA3937_RS03235 are separated by 55 nucleotides DDA3937_RS03235 and DDA3937_RS03240 are separated by 326 nucleotides
DDA3937_RS03225: DDA3937_RS03225 - LysR family transcriptional regulator, at 703,631 to 704,524
_RS03225
DDA3937_RS03230: DDA3937_RS03230 - acetolactate decarboxylase, at 704,636 to 705,424
_RS03230
DDA3937_RS03235: DDA3937_RS03235 - acetolactate synthase AlsS, at 705,480 to 707,159
_RS03235
DDA3937_RS03240: DDA3937_RS03240 - lactaldehyde reductase, at 707,486 to 708,637
_RS03240
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 704.516 kb on + strand at 704.516 kb on + strand at 704.516 kb on + strand at 704.516 kb on + strand at 704.516 kb on + strand at 704.517 kb on - strand at 704.517 kb on - strand at 704.524 kb on + strand at 704.525 kb on - strand at 704.527 kb on - strand at 704.557 kb on + strand at 704.653 kb on + strand at 704.653 kb on + strand at 704.654 kb on - strand at 704.728 kb on + strand, within DDA3937_RS03230 at 704.728 kb on + strand, within DDA3937_RS03230 at 704.728 kb on + strand at 704.729 kb on - strand, within DDA3937_RS03230 at 704.761 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.038 kb on - strand, within DDA3937_RS03230 at 705.060 kb on + strand, within DDA3937_RS03230 at 705.061 kb on - strand, within DDA3937_RS03230 at 705.061 kb on - strand, within DDA3937_RS03230 at 705.061 kb on - strand, within DDA3937_RS03230 at 705.074 kb on - strand, within DDA3937_RS03230 at 705.097 kb on - strand, within DDA3937_RS03230 at 705.097 kb on - strand, within DDA3937_RS03230 at 705.116 kb on + strand, within DDA3937_RS03230 at 705.116 kb on + strand, within DDA3937_RS03230 at 705.117 kb on - strand, within DDA3937_RS03230 at 705.117 kb on - strand, within DDA3937_RS03230 at 705.118 kb on + strand, within DDA3937_RS03230 at 705.119 kb on - strand, within DDA3937_RS03230 at 705.119 kb on - strand, within DDA3937_RS03230 at 705.119 kb on - strand, within DDA3937_RS03230 at 705.197 kb on - strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.207 kb on - strand, within DDA3937_RS03230 at 705.207 kb on - strand, within DDA3937_RS03230 at 705.207 kb on - strand, within DDA3937_RS03230 at 705.207 kb on - strand at 705.207 kb on - strand, within DDA3937_RS03230 at 705.234 kb on - strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.287 kb on + strand, within DDA3937_RS03230 at 705.306 kb on + strand, within DDA3937_RS03230 at 705.306 kb on + strand, within DDA3937_RS03230 at 705.306 kb on + strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.378 kb on + strand at 705.379 kb on - strand at 705.438 kb on + strand at 705.461 kb on + strand at 705.461 kb on + strand at 705.462 kb on - strand at 705.472 kb on + strand at 705.488 kb on + strand at 705.488 kb on + strand at 705.488 kb on + strand at 705.489 kb on - strand at 705.513 kb on - strand at 705.532 kb on + strand at 705.532 kb on + strand at 705.561 kb on + strand at 705.561 kb on + strand at 705.561 kb on + strand at 705.561 kb on + strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.562 kb on - strand at 705.590 kb on - strand at 705.665 kb on + strand, within DDA3937_RS03235 at 705.665 kb on + strand, within DDA3937_RS03235 at 705.880 kb on - strand, within DDA3937_RS03235 at 705.880 kb on - strand, within DDA3937_RS03235 at 705.880 kb on - strand, within DDA3937_RS03235 at 705.989 kb on + strand, within DDA3937_RS03235 at 706.091 kb on - strand, within DDA3937_RS03235 at 706.199 kb on + strand, within DDA3937_RS03235 at 706.199 kb on + strand, within DDA3937_RS03235 at 706.199 kb on + strand, within DDA3937_RS03235 at 706.200 kb on - strand, within DDA3937_RS03235 at 706.203 kb on + strand, within DDA3937_RS03235 at 706.203 kb on + strand, within DDA3937_RS03235 at 706.203 kb on + strand, within DDA3937_RS03235 at 706.204 kb on - strand, within DDA3937_RS03235 at 706.294 kb on + strand, within DDA3937_RS03235 at 706.294 kb on + strand, within DDA3937_RS03235 at 706.294 kb on + strand, within DDA3937_RS03235 at 706.294 kb on + strand, within DDA3937_RS03235 at 706.295 kb on - strand, within DDA3937_RS03235 at 706.295 kb on - strand, within DDA3937_RS03235 at 706.295 kb on - strand, within DDA3937_RS03235 at 706.311 kb on - strand, within DDA3937_RS03235 at 706.341 kb on + strand, within DDA3937_RS03235 at 706.341 kb on + strand, within DDA3937_RS03235 at 706.385 kb on + strand, within DDA3937_RS03235 at 706.385 kb on + strand, within DDA3937_RS03235 at 706.385 kb on + strand, within DDA3937_RS03235 at 706.386 kb on - strand, within DDA3937_RS03235 at 706.634 kb on + strand, within DDA3937_RS03235 at 706.635 kb on - strand, within DDA3937_RS03235 at 706.643 kb on + strand, within DDA3937_RS03235 at 706.644 kb on - strand, within DDA3937_RS03235 at 706.644 kb on - strand, within DDA3937_RS03235 at 706.644 kb on - strand, within DDA3937_RS03235 at 706.695 kb on + strand, within DDA3937_RS03235 at 706.908 kb on + strand, within DDA3937_RS03235 at 706.909 kb on - strand, within DDA3937_RS03235 at 706.982 kb on + strand, within DDA3937_RS03235 at 706.982 kb on + strand, within DDA3937_RS03235 at 707.009 kb on + strand at 707.121 kb on + strand at 707.121 kb on + strand at 707.122 kb on - strand at 707.163 kb on + strand at 707.163 kb on + strand at 707.164 kb on - strand at 707.164 kb on - strand at 707.166 kb on + strand at 707.167 kb on - strand at 707.184 kb on + strand at 707.185 kb on - strand at 707.185 kb on - strand at 707.192 kb on + strand at 707.226 kb on + strand at 707.244 kb on - strand at 707.244 kb on - strand at 707.254 kb on - strand at 707.263 kb on - strand at 707.263 kb on - strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.328 kb on + strand at 707.329 kb on - strand at 707.329 kb on - strand at 707.329 kb on - strand at 707.329 kb on - strand at 707.331 kb on + strand at 707.454 kb on + strand at 707.460 kb on + strand at 707.460 kb on + strand at 707.461 kb on - strand at 707.461 kb on - strand at 707.461 kb on - strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.464 kb on + strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.465 kb on - strand at 707.490 kb on + strand at 707.490 kb on + strand at 707.490 kb on + strand at 707.491 kb on - strand at 707.491 kb on - strand at 707.491 kb on - strand at 707.491 kb on - strand at 707.502 kb on + strand at 707.502 kb on + strand at 707.502 kb on + strand at 707.503 kb on - strand at 707.503 kb on - strand at 707.658 kb on - strand, within DDA3937_RS03240 at 707.714 kb on + strand, within DDA3937_RS03240 at 707.714 kb on + strand at 707.757 kb on + strand, within DDA3937_RS03240 at 707.757 kb on + strand, within DDA3937_RS03240 at 707.821 kb on + strand, within DDA3937_RS03240 at 707.822 kb on - strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.823 kb on + strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.824 kb on - strand, within DDA3937_RS03240 at 707.896 kb on + strand at 707.896 kb on + strand, within DDA3937_RS03240 at 707.897 kb on - strand, within DDA3937_RS03240 at 707.897 kb on - strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.898 kb on + strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 707.899 kb on - strand, within DDA3937_RS03240 at 708.003 kb on - strand, within DDA3937_RS03240 at 708.026 kb on - strand, within DDA3937_RS03240 at 708.131 kb on - strand, within DDA3937_RS03240
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 704,516 + +0.5 704,516 + -1.3 704,516 + -1.5 704,516 + +0.1 704,516 + -1.8 704,517 - -0.4 704,517 - -0.7 704,524 + -0.1 704,525 - +1.5 704,527 - +0.3 704,557 + -0.5 704,653 + -0.0 704,653 + -0.4 704,654 - -1.1 704,728 + DDA3937_RS03230 0.12 +0.3 704,728 + DDA3937_RS03230 0.12 +0.8 704,728 + +1.2 704,729 - DDA3937_RS03230 0.12 +0.8 704,761 + DDA3937_RS03230 0.16 -0.3 704,779 + DDA3937_RS03230 0.18 -0.6 704,779 + DDA3937_RS03230 0.18 -0.3 704,779 + DDA3937_RS03230 0.18 +2.3 704,779 + DDA3937_RS03230 0.18 +0.4 705,037 + DDA3937_RS03230 0.51 +0.1 705,037 + DDA3937_RS03230 0.51 -0.6 705,037 + DDA3937_RS03230 0.51 +0.5 705,037 + DDA3937_RS03230 0.51 +0.7 705,038 - DDA3937_RS03230 0.51 +0.5 705,060 + DDA3937_RS03230 0.54 -1.4 705,061 - DDA3937_RS03230 0.54 -0.1 705,061 - DDA3937_RS03230 0.54 -0.8 705,061 - DDA3937_RS03230 0.54 +1.7 705,074 - DDA3937_RS03230 0.56 -0.2 705,097 - DDA3937_RS03230 0.58 -0.3 705,097 - DDA3937_RS03230 0.58 +0.2 705,116 + DDA3937_RS03230 0.61 -0.6 705,116 + DDA3937_RS03230 0.61 +0.6 705,117 - DDA3937_RS03230 0.61 +0.9 705,117 - DDA3937_RS03230 0.61 -0.2 705,118 + DDA3937_RS03230 0.61 -0.3 705,119 - DDA3937_RS03230 0.61 +0.2 705,119 - DDA3937_RS03230 0.61 -0.8 705,119 - DDA3937_RS03230 0.61 -0.3 705,197 - DDA3937_RS03230 0.71 +0.2 705,206 + DDA3937_RS03230 0.72 -1.1 705,206 + DDA3937_RS03230 0.72 -1.5 705,206 + DDA3937_RS03230 0.72 -1.4 705,206 + DDA3937_RS03230 0.72 +0.5 705,206 + DDA3937_RS03230 0.72 +0.1 705,206 + DDA3937_RS03230 0.72 +0.8 705,207 - DDA3937_RS03230 0.72 -0.2 705,207 - DDA3937_RS03230 0.72 +0.5 705,207 - DDA3937_RS03230 0.72 -0.1 705,207 - +2.5 705,207 - DDA3937_RS03230 0.72 +1.1 705,234 - DDA3937_RS03230 0.76 -0.1 705,277 + DDA3937_RS03230 0.81 -0.1 705,277 + DDA3937_RS03230 0.81 -0.9 705,277 + DDA3937_RS03230 0.81 -3.1 705,277 + DDA3937_RS03230 0.81 -1.3 705,277 + DDA3937_RS03230 0.81 -0.4 705,277 + DDA3937_RS03230 0.81 -0.4 705,277 + DDA3937_RS03230 0.81 +0.3 705,278 - DDA3937_RS03230 0.81 +0.1 705,278 - DDA3937_RS03230 0.81 +2.5 705,278 - DDA3937_RS03230 0.81 -0.3 705,278 - DDA3937_RS03230 0.81 +0.5 705,278 - DDA3937_RS03230 0.81 +0.5 705,278 - DDA3937_RS03230 0.81 +0.1 705,287 + DDA3937_RS03230 0.83 -0.2 705,306 + DDA3937_RS03230 0.85 +0.2 705,306 + DDA3937_RS03230 0.85 +2.5 705,306 + DDA3937_RS03230 0.85 +0.6 705,307 - DDA3937_RS03230 0.85 -0.2 705,307 - DDA3937_RS03230 0.85 -0.2 705,307 - DDA3937_RS03230 0.85 -0.0 705,307 - DDA3937_RS03230 0.85 +0.1 705,378 + -0.5 705,379 - +0.1 705,438 + +0.3 705,461 + +2.2 705,461 + +0.5 705,462 - -0.9 705,472 + -0.2 705,488 + -0.9 705,488 + -0.6 705,488 + -0.3 705,489 - -0.4 705,513 - -1.1 705,532 + -0.7 705,532 + -0.3 705,561 + +1.3 705,561 + +0.6 705,561 + -0.1 705,561 + -1.3 705,562 - +0.3 705,562 - +0.0 705,562 - +0.5 705,562 - -0.7 705,562 - +1.2 705,562 - -0.5 705,562 - -0.8 705,562 - -1.1 705,562 - +1.2 705,590 - -0.6 705,665 + DDA3937_RS03235 0.11 -1.1 705,665 + DDA3937_RS03235 0.11 +2.7 705,880 - DDA3937_RS03235 0.24 +0.7 705,880 - DDA3937_RS03235 0.24 +0.1 705,880 - DDA3937_RS03235 0.24 +1.1 705,989 + DDA3937_RS03235 0.30 -0.2 706,091 - DDA3937_RS03235 0.36 +0.0 706,199 + DDA3937_RS03235 0.43 -0.0 706,199 + DDA3937_RS03235 0.43 +0.1 706,199 + DDA3937_RS03235 0.43 -0.3 706,200 - DDA3937_RS03235 0.43 -0.2 706,203 + DDA3937_RS03235 0.43 +0.5 706,203 + DDA3937_RS03235 0.43 +0.1 706,203 + DDA3937_RS03235 0.43 +0.1 706,204 - DDA3937_RS03235 0.43 -0.5 706,294 + DDA3937_RS03235 0.48 -0.0 706,294 + DDA3937_RS03235 0.48 +0.6 706,294 + DDA3937_RS03235 0.48 -0.3 706,294 + DDA3937_RS03235 0.48 +0.5 706,295 - DDA3937_RS03235 0.49 -1.1 706,295 - DDA3937_RS03235 0.49 +0.5 706,295 - DDA3937_RS03235 0.49 -1.1 706,311 - DDA3937_RS03235 0.49 -0.2 706,341 + DDA3937_RS03235 0.51 +0.6 706,341 + DDA3937_RS03235 0.51 -0.2 706,385 + DDA3937_RS03235 0.54 +0.4 706,385 + DDA3937_RS03235 0.54 -0.9 706,385 + DDA3937_RS03235 0.54 +0.6 706,386 - DDA3937_RS03235 0.54 -0.3 706,634 + DDA3937_RS03235 0.69 +0.4 706,635 - DDA3937_RS03235 0.69 -0.5 706,643 + DDA3937_RS03235 0.69 -0.4 706,644 - DDA3937_RS03235 0.69 +0.1 706,644 - DDA3937_RS03235 0.69 -2.1 706,644 - DDA3937_RS03235 0.69 -0.6 706,695 + DDA3937_RS03235 0.72 -0.9 706,908 + DDA3937_RS03235 0.85 +0.7 706,909 - DDA3937_RS03235 0.85 -0.9 706,982 + DDA3937_RS03235 0.89 +0.8 706,982 + DDA3937_RS03235 0.89 -0.1 707,009 + -0.2 707,121 + -1.2 707,121 + +1.6 707,122 - -2.3 707,163 + +0.0 707,163 + -0.1 707,164 - +0.6 707,164 - -0.4 707,166 + -1.8 707,167 - -0.7 707,184 + -0.6 707,185 - -1.8 707,185 - -0.7 707,192 + +0.1 707,226 + +0.1 707,244 - -0.2 707,244 - +0.8 707,254 - -0.1 707,263 - -0.6 707,263 - -0.5 707,328 + +0.0 707,328 + -0.3 707,328 + -0.2 707,328 + -1.9 707,328 + -0.9 707,328 + -0.2 707,328 + -0.8 707,329 - -1.5 707,329 - -1.1 707,329 - +0.2 707,329 - +0.2 707,331 + +0.1 707,454 + -0.7 707,460 + +1.4 707,460 + -0.3 707,461 - +0.0 707,461 - -0.4 707,461 - +0.9 707,464 + -0.7 707,464 + -0.5 707,464 + +1.5 707,464 + +0.6 707,464 + +1.5 707,464 + +0.5 707,464 + -1.5 707,465 - +0.2 707,465 - +0.5 707,465 - -0.4 707,465 - -0.7 707,465 - +0.2 707,465 - +2.7 707,490 + -1.1 707,490 + -0.5 707,490 + +0.5 707,491 - +1.1 707,491 - +0.3 707,491 - -0.3 707,491 - -0.5 707,502 + -1.1 707,502 + +0.0 707,502 + -1.1 707,503 - -0.4 707,503 - -1.9 707,658 - DDA3937_RS03240 0.15 +0.1 707,714 + DDA3937_RS03240 0.20 -0.8 707,714 + -0.1 707,757 + DDA3937_RS03240 0.24 +0.6 707,757 + DDA3937_RS03240 0.24 -0.6 707,821 + DDA3937_RS03240 0.29 +0.2 707,822 - DDA3937_RS03240 0.29 -1.7 707,823 + DDA3937_RS03240 0.29 -0.1 707,823 + DDA3937_RS03240 0.29 -0.2 707,823 + DDA3937_RS03240 0.29 -1.5 707,823 + DDA3937_RS03240 0.29 -2.5 707,823 + DDA3937_RS03240 0.29 -0.8 707,824 - DDA3937_RS03240 0.29 -0.0 707,824 - DDA3937_RS03240 0.29 -0.1 707,824 - DDA3937_RS03240 0.29 +1.5 707,824 - DDA3937_RS03240 0.29 -0.6 707,824 - DDA3937_RS03240 0.29 +0.0 707,824 - DDA3937_RS03240 0.29 -0.2 707,824 - DDA3937_RS03240 0.29 -1.6 707,824 - DDA3937_RS03240 0.29 -0.0 707,896 + -1.5 707,896 + DDA3937_RS03240 0.36 -1.6 707,897 - DDA3937_RS03240 0.36 -0.4 707,897 - DDA3937_RS03240 0.36 +0.1 707,898 + DDA3937_RS03240 0.36 -0.1 707,898 + DDA3937_RS03240 0.36 +0.2 707,898 + DDA3937_RS03240 0.36 -2.5 707,898 + DDA3937_RS03240 0.36 -0.1 707,898 + DDA3937_RS03240 0.36 +0.4 707,898 + DDA3937_RS03240 0.36 -0.2 707,898 + DDA3937_RS03240 0.36 -2.3 707,899 - DDA3937_RS03240 0.36 -0.3 707,899 - DDA3937_RS03240 0.36 -0.3 707,899 - DDA3937_RS03240 0.36 +0.9 707,899 - DDA3937_RS03240 0.36 +0.7 707,899 - DDA3937_RS03240 0.36 +0.2 707,899 - DDA3937_RS03240 0.36 -0.1 708,003 - DDA3937_RS03240 0.45 -0.2 708,026 - DDA3937_RS03240 0.47 -0.6 708,131 - DDA3937_RS03240 0.56 -0.6
Or see this region's nucleotide sequence