Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02715 and DDA3937_RS02720 are separated by 174 nucleotides DDA3937_RS02720 and DDA3937_RS02725 are separated by 442 nucleotides
DDA3937_RS02715: DDA3937_RS02715 - anaerobic C4-dicarboxylate transporter, at 599,639 to 600,940
_RS02715
DDA3937_RS02720: DDA3937_RS02720 - aspartate ammonia-lyase, at 601,115 to 602,554
_RS02720
DDA3937_RS02725: DDA3937_RS02725 - FxsA family protein, at 602,997 to 603,524
_RS02725
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 600.223 kb on - strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.343 kb on - strand, within DDA3937_RS02715 at 600.415 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.652 kb on - strand, within DDA3937_RS02715 at 600.681 kb on + strand at 600.681 kb on + strand, within DDA3937_RS02715 at 600.682 kb on - strand, within DDA3937_RS02715 at 600.726 kb on + strand, within DDA3937_RS02715 at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.901 kb on - strand at 600.920 kb on - strand at 600.934 kb on + strand at 601.013 kb on - strand at 601.048 kb on + strand at 601.048 kb on + strand at 601.049 kb on - strand at 601.049 kb on - strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.060 kb on + strand at 601.061 kb on - strand at 601.095 kb on + strand at 601.095 kb on + strand at 601.096 kb on - strand at 601.117 kb on - strand at 601.155 kb on + strand at 601.156 kb on - strand at 601.156 kb on - strand at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.725 kb on + strand, within DDA3937_RS02720 at 601.726 kb on - strand, within DDA3937_RS02720 at 601.806 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720 at 602.054 kb on + strand, within DDA3937_RS02720 at 602.085 kb on + strand, within DDA3937_RS02720 at 602.085 kb on + strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.170 kb on - strand, within DDA3937_RS02720 at 602.170 kb on - strand, within DDA3937_RS02720 at 602.306 kb on + strand, within DDA3937_RS02720 at 602.306 kb on + strand, within DDA3937_RS02720 at 602.307 kb on - strand, within DDA3937_RS02720 at 602.307 kb on - strand, within DDA3937_RS02720 at 602.351 kb on + strand, within DDA3937_RS02720 at 602.351 kb on + strand, within DDA3937_RS02720 at 602.352 kb on - strand, within DDA3937_RS02720 at 602.399 kb on + strand, within DDA3937_RS02720 at 602.399 kb on + strand, within DDA3937_RS02720 at 602.400 kb on - strand, within DDA3937_RS02720 at 602.412 kb on - strand at 602.449 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.487 kb on + strand at 602.488 kb on - strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.519 kb on + strand at 602.519 kb on + strand at 602.519 kb on + strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.546 kb on - strand at 602.546 kb on - strand at 602.546 kb on - strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.590 kb on + strand at 602.591 kb on - strand at 602.591 kb on - strand at 602.597 kb on + strand at 602.597 kb on + strand at 602.598 kb on - strand at 602.598 kb on - strand at 602.598 kb on - strand at 602.633 kb on - strand at 602.657 kb on + strand at 602.658 kb on - strand at 602.674 kb on - strand at 602.703 kb on - strand at 602.703 kb on - strand at 602.703 kb on - strand at 602.723 kb on + strand at 602.724 kb on - strand at 602.724 kb on - strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.775 kb on - strand at 602.775 kb on - strand at 602.810 kb on + strand at 602.843 kb on + strand at 602.843 kb on + strand at 602.844 kb on - strand at 602.860 kb on + strand at 602.860 kb on + strand at 602.861 kb on - strand at 602.861 kb on - strand at 602.861 kb on - strand at 602.862 kb on + strand at 602.862 kb on + strand at 602.862 kb on + strand at 602.863 kb on - strand at 602.863 kb on - strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.872 kb on + strand at 602.872 kb on + strand at 602.873 kb on - strand at 602.880 kb on + strand at 602.881 kb on - strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.891 kb on - strand at 602.899 kb on - strand at 602.899 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.934 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.976 kb on + strand at 602.976 kb on + strand at 602.977 kb on - strand at 602.977 kb on - strand at 603.036 kb on + strand at 603.223 kb on + strand, within DDA3937_RS02725 at 603.224 kb on - strand, within DDA3937_RS02725 at 603.289 kb on + strand, within DDA3937_RS02725 at 603.290 kb on - strand, within DDA3937_RS02725
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 600,223 - DDA3937_RS02715 0.45 -0.2 600,342 + DDA3937_RS02715 0.54 -0.2 600,342 + DDA3937_RS02715 0.54 +0.5 600,343 - DDA3937_RS02715 0.54 +0.9 600,415 + DDA3937_RS02715 0.60 +0.5 600,447 + DDA3937_RS02715 0.62 -0.5 600,447 + DDA3937_RS02715 0.62 -0.9 600,651 + DDA3937_RS02715 0.78 +0.2 600,651 + DDA3937_RS02715 0.78 -1.2 600,651 + DDA3937_RS02715 0.78 +0.2 600,651 + DDA3937_RS02715 0.78 -0.3 600,652 - DDA3937_RS02715 0.78 +0.0 600,681 + -0.5 600,681 + DDA3937_RS02715 0.80 -0.2 600,682 - DDA3937_RS02715 0.80 -0.8 600,726 + DDA3937_RS02715 0.83 -0.8 600,900 + -1.8 600,900 + -0.6 600,900 + -1.5 600,900 + +1.1 600,901 - -0.5 600,920 - +1.4 600,934 + -2.6 601,013 - -0.7 601,048 + +1.3 601,048 + -0.2 601,049 - +0.1 601,049 - +0.7 601,055 + -0.4 601,055 + +0.4 601,055 + -0.1 601,055 + +1.7 601,060 + +0.7 601,061 - -0.3 601,095 + +0.1 601,095 + -0.1 601,096 - -0.2 601,117 - -0.1 601,155 + +0.5 601,156 - +1.1 601,156 - +0.9 601,314 + DDA3937_RS02720 0.14 +1.0 601,314 + DDA3937_RS02720 0.14 +0.8 601,314 + DDA3937_RS02720 0.14 +0.4 601,314 + DDA3937_RS02720 0.14 +0.8 601,314 + DDA3937_RS02720 0.14 +0.2 601,314 + DDA3937_RS02720 0.14 +2.6 601,314 + DDA3937_RS02720 0.14 +1.8 601,314 + DDA3937_RS02720 0.14 +0.3 601,315 - DDA3937_RS02720 0.14 +0.2 601,315 - DDA3937_RS02720 0.14 -0.7 601,315 - DDA3937_RS02720 0.14 +0.5 601,315 - DDA3937_RS02720 0.14 +0.4 601,336 + DDA3937_RS02720 0.15 -1.6 601,336 + DDA3937_RS02720 0.15 +0.4 601,336 + DDA3937_RS02720 0.15 +1.7 601,336 + DDA3937_RS02720 0.15 +0.5 601,336 + DDA3937_RS02720 0.15 -0.2 601,337 - DDA3937_RS02720 0.15 +0.7 601,337 - DDA3937_RS02720 0.15 +1.1 601,337 - DDA3937_RS02720 0.15 +1.5 601,337 - DDA3937_RS02720 0.15 +0.4 601,337 - DDA3937_RS02720 0.15 +2.2 601,344 + DDA3937_RS02720 0.16 +0.7 601,344 + DDA3937_RS02720 0.16 -0.1 601,344 + DDA3937_RS02720 0.16 -0.3 601,344 + DDA3937_RS02720 0.16 +1.3 601,344 + DDA3937_RS02720 0.16 +1.2 601,344 + DDA3937_RS02720 0.16 +0.9 601,344 + DDA3937_RS02720 0.16 +0.1 601,344 + DDA3937_RS02720 0.16 +0.7 601,345 - DDA3937_RS02720 0.16 +0.8 601,345 - DDA3937_RS02720 0.16 +0.6 601,345 - DDA3937_RS02720 0.16 -0.5 601,345 - DDA3937_RS02720 0.16 +1.0 601,345 - DDA3937_RS02720 0.16 +1.3 601,345 - DDA3937_RS02720 0.16 +0.8 601,345 - DDA3937_RS02720 0.16 +0.7 601,404 + DDA3937_RS02720 0.20 +2.0 601,404 + DDA3937_RS02720 0.20 +1.0 601,405 - DDA3937_RS02720 0.20 +1.2 601,405 - DDA3937_RS02720 0.20 +0.4 601,405 - DDA3937_RS02720 0.20 +0.2 601,725 + DDA3937_RS02720 0.42 +1.3 601,726 - DDA3937_RS02720 0.42 +0.5 601,806 - DDA3937_RS02720 0.48 +1.1 601,822 - DDA3937_RS02720 0.49 -0.4 601,822 - DDA3937_RS02720 0.49 +0.5 602,054 + DDA3937_RS02720 0.65 +1.2 602,085 + DDA3937_RS02720 0.67 +0.9 602,085 + DDA3937_RS02720 0.67 +0.9 602,086 - DDA3937_RS02720 0.67 +1.2 602,086 - DDA3937_RS02720 0.67 +0.8 602,086 - DDA3937_RS02720 0.67 +0.9 602,086 - DDA3937_RS02720 0.67 +0.0 602,086 - DDA3937_RS02720 0.67 +0.6 602,170 - DDA3937_RS02720 0.73 +0.8 602,170 - DDA3937_RS02720 0.73 +0.1 602,306 + DDA3937_RS02720 0.83 +0.8 602,306 + DDA3937_RS02720 0.83 -0.5 602,307 - DDA3937_RS02720 0.83 +0.5 602,307 - DDA3937_RS02720 0.83 -0.2 602,351 + DDA3937_RS02720 0.86 +0.9 602,351 + DDA3937_RS02720 0.86 +0.6 602,352 - DDA3937_RS02720 0.86 +0.4 602,399 + DDA3937_RS02720 0.89 +2.3 602,399 + DDA3937_RS02720 0.89 +0.3 602,400 - DDA3937_RS02720 0.89 +0.8 602,412 - +2.5 602,449 + +0.8 602,451 + +1.0 602,451 + +0.8 602,451 + +0.8 602,451 + +0.3 602,451 + +1.4 602,451 + +1.0 602,451 + +1.0 602,451 + +1.2 602,451 + +1.2 602,451 + +1.7 602,452 - +0.8 602,452 - +0.4 602,452 - +0.2 602,452 - +0.9 602,487 + +0.1 602,488 - -0.3 602,490 + +0.6 602,490 + +1.3 602,490 + +0.7 602,490 + -0.1 602,490 + +0.5 602,490 + +0.8 602,490 + +0.9 602,490 + +1.9 602,490 + +0.4 602,490 + +1.4 602,491 - -0.9 602,491 - +1.0 602,491 - +0.0 602,491 - -0.2 602,491 - +0.5 602,519 + +1.5 602,519 + +0.2 602,519 + +0.4 602,520 - +0.6 602,520 - +0.8 602,520 - +1.7 602,520 - +0.7 602,520 - +0.2 602,546 - -1.1 602,546 - +1.1 602,546 - +0.7 602,568 + +0.5 602,568 + +1.7 602,568 + +0.9 602,568 + +1.3 602,590 + +1.2 602,591 - +0.1 602,591 - -0.1 602,597 + +1.0 602,597 + +0.9 602,598 - +0.2 602,598 - -0.2 602,598 - +0.1 602,633 - +0.3 602,657 + +0.8 602,658 - -0.1 602,674 - +0.1 602,703 - -0.9 602,703 - -0.3 602,703 - -0.7 602,723 + +0.7 602,724 - +0.1 602,724 - -1.3 602,774 + -0.5 602,774 + -0.1 602,774 + -0.8 602,774 + -0.5 602,774 + +0.5 602,775 - -1.3 602,775 - +1.1 602,810 + +0.3 602,843 + +0.3 602,843 + -0.5 602,844 - +0.5 602,860 + +0.3 602,860 + -0.1 602,861 - -0.5 602,861 - -0.5 602,861 - -0.1 602,862 + +0.9 602,862 + -0.2 602,862 + +0.0 602,863 - +0.5 602,863 - -1.2 602,867 + -0.1 602,867 + -0.5 602,867 + +0.4 602,867 + +0.8 602,867 + -1.2 602,867 + -0.1 602,867 + +1.4 602,868 - -0.4 602,868 - +0.5 602,868 - +0.9 602,868 - -0.3 602,868 - -0.9 602,868 - -0.2 602,868 - -0.3 602,872 + -0.6 602,872 + -1.1 602,873 - +0.8 602,880 + -0.5 602,881 - -0.3 602,890 + -0.7 602,890 + +1.2 602,890 + -0.9 602,890 + -0.1 602,891 - +0.3 602,899 - +0.5 602,899 - -1.1 602,931 + -0.1 602,931 + -1.2 602,934 + -1.8 602,972 + -0.7 602,972 + -0.1 602,972 + +0.8 602,972 + -2.9 602,976 + -0.7 602,976 + +1.1 602,977 - -0.1 602,977 - -0.1 603,036 + -0.5 603,223 + DDA3937_RS02725 0.43 +0.2 603,224 - DDA3937_RS02725 0.43 +1.9 603,289 + DDA3937_RS02725 0.55 -1.3 603,290 - DDA3937_RS02725 0.55 -1.1
Or see this region's nucleotide sequence