Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02525 and DDA3937_RS02530 are separated by 234 nucleotides DDA3937_RS02530 and DDA3937_RS02535 overlap by 16 nucleotides DDA3937_RS02535 and DDA3937_RS02540 overlap by 4 nucleotides
DDA3937_RS02525: DDA3937_RS02525 - DUF1868 domain-containing protein, at 558,888 to 559,718
_RS02525
DDA3937_RS02530: DDA3937_RS02530 - acetyltransferase, at 559,953 to 560,633
_RS02530
DDA3937_RS02535: DDA3937_RS02535 - hydroxyisourate hydrolase, at 560,618 to 560,950
_RS02535
DDA3937_RS02540: DDA3937_RS02540 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 560,947 to 561,447
_RS02540
Position (kb) 560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 559.664 kb on + strand at 559.665 kb on - strand at 559.665 kb on - strand at 559.669 kb on + strand at 559.670 kb on - strand at 559.689 kb on + strand at 559.689 kb on + strand at 559.690 kb on - strand at 559.690 kb on - strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.772 kb on + strand at 559.772 kb on + strand at 559.824 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 560.011 kb on + strand at 560.011 kb on + strand at 560.012 kb on - strand at 560.025 kb on - strand, within DDA3937_RS02530 at 560.061 kb on - strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.066 kb on - strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.126 kb on + strand, within DDA3937_RS02530 at 560.220 kb on + strand, within DDA3937_RS02530 at 560.231 kb on + strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.298 kb on - strand, within DDA3937_RS02530 at 560.581 kb on - strand at 560.586 kb on + strand at 560.631 kb on + strand at 560.632 kb on - strand at 560.635 kb on + strand at 560.635 kb on + strand at 560.674 kb on - strand, within DDA3937_RS02535 at 560.718 kb on + strand at 560.718 kb on + strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.719 kb on - strand, within DDA3937_RS02535 at 560.758 kb on + strand, within DDA3937_RS02535 at 560.776 kb on - strand, within DDA3937_RS02535 at 560.834 kb on - strand, within DDA3937_RS02535 at 560.938 kb on + strand at 560.938 kb on + strand at 560.939 kb on - strand at 560.945 kb on - strand at 560.982 kb on + strand at 561.143 kb on - strand, within DDA3937_RS02540 at 561.392 kb on - strand, within DDA3937_RS02540 at 561.437 kb on - strand at 561.437 kb on - strand at 561.437 kb on - strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.479 kb on + strand at 561.480 kb on - strand at 561.480 kb on - strand at 561.514 kb on + strand at 561.515 kb on - strand at 561.540 kb on - strand at 561.551 kb on + strand at 561.551 kb on + strand at 561.552 kb on - strand at 561.583 kb on - strand at 561.594 kb on + strand at 561.594 kb on + strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.595 kb on - strand at 561.631 kb on - strand at 561.631 kb on - strand at 561.693 kb on + strand at 561.693 kb on + strand at 561.694 kb on - strand at 561.694 kb on - strand at 561.795 kb on - strand at 561.795 kb on - strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.796 kb on + strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.800 kb on + strand at 561.881 kb on + strand at 561.881 kb on + strand at 561.891 kb on + strand at 561.892 kb on - strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.895 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand at 561.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 559,664 + -0.8 559,665 - -0.3 559,665 - +1.8 559,669 + -0.2 559,670 - -2.9 559,689 + +0.6 559,689 + -1.0 559,690 - -0.8 559,690 - +0.9 559,718 + -0.8 559,718 + +0.3 559,718 + -0.6 559,718 + -1.0 559,718 + -0.0 559,719 - -0.9 559,719 - +0.0 559,719 - -1.3 559,719 - +1.0 559,719 - -3.1 559,719 - +0.1 559,719 - -0.2 559,719 - -0.2 559,745 + -0.6 559,745 + -0.3 559,745 + -0.0 559,745 + -0.3 559,745 + -0.6 559,746 - +0.6 559,746 - +0.2 559,746 - -0.9 559,746 - +0.0 559,746 - -0.2 559,746 - -1.8 559,746 - -0.6 559,746 - +0.3 559,746 - +0.1 559,749 + -0.5 559,749 + -0.1 559,749 + -0.7 559,749 + -0.5 559,750 - -1.8 559,750 - +0.2 559,750 - -0.8 559,755 + -1.4 559,755 + +0.4 559,755 + -0.3 559,755 + +0.1 559,755 + +1.6 559,755 + -0.6 559,756 - +0.1 559,756 - +1.2 559,756 - -0.3 559,772 + +2.9 559,772 + -0.3 559,824 - -0.1 559,953 - +0.1 559,953 - +0.0 559,953 - -0.6 560,011 + -0.5 560,011 + +0.3 560,012 - -0.0 560,025 - DDA3937_RS02530 0.11 -0.7 560,061 - DDA3937_RS02530 0.16 -0.0 560,065 + DDA3937_RS02530 0.16 +0.1 560,065 + DDA3937_RS02530 0.16 +0.1 560,066 - DDA3937_RS02530 0.17 -0.2 560,091 + DDA3937_RS02530 0.20 +0.1 560,091 + DDA3937_RS02530 0.20 -1.4 560,091 + DDA3937_RS02530 0.20 +0.1 560,091 + DDA3937_RS02530 0.20 +1.2 560,092 - DDA3937_RS02530 0.20 +0.1 560,092 - DDA3937_RS02530 0.20 +0.4 560,097 + DDA3937_RS02530 0.21 +0.5 560,097 + DDA3937_RS02530 0.21 +1.0 560,097 + DDA3937_RS02530 0.21 -1.1 560,097 + DDA3937_RS02530 0.21 +0.3 560,097 + DDA3937_RS02530 0.21 -1.3 560,097 + DDA3937_RS02530 0.21 +1.4 560,097 + DDA3937_RS02530 0.21 -0.2 560,097 + DDA3937_RS02530 0.21 -0.4 560,098 - DDA3937_RS02530 0.21 +0.2 560,098 - DDA3937_RS02530 0.21 -0.0 560,098 - DDA3937_RS02530 0.21 +1.0 560,098 - DDA3937_RS02530 0.21 -0.4 560,098 - DDA3937_RS02530 0.21 +0.2 560,126 + DDA3937_RS02530 0.25 +0.4 560,220 + DDA3937_RS02530 0.39 -1.0 560,231 + DDA3937_RS02530 0.41 +0.1 560,232 - DDA3937_RS02530 0.41 -0.8 560,232 - DDA3937_RS02530 0.41 -0.2 560,275 + DDA3937_RS02530 0.47 +0.8 560,275 + DDA3937_RS02530 0.47 +1.0 560,275 + DDA3937_RS02530 0.47 +0.6 560,276 - DDA3937_RS02530 0.47 +0.0 560,276 - DDA3937_RS02530 0.47 -0.1 560,276 - DDA3937_RS02530 0.47 -0.5 560,298 - DDA3937_RS02530 0.51 -0.0 560,581 - +0.2 560,586 + -0.6 560,631 + -1.9 560,632 - -0.4 560,635 + -0.2 560,635 + +0.0 560,674 - DDA3937_RS02535 0.17 -1.3 560,718 + +0.2 560,718 + DDA3937_RS02535 0.30 +1.6 560,719 - DDA3937_RS02535 0.30 -0.0 560,719 - DDA3937_RS02535 0.30 +0.5 560,719 - DDA3937_RS02535 0.30 +1.6 560,719 - DDA3937_RS02535 0.30 +1.3 560,758 + DDA3937_RS02535 0.42 +0.7 560,776 - DDA3937_RS02535 0.47 +1.0 560,834 - DDA3937_RS02535 0.65 -2.7 560,938 + +0.1 560,938 + -0.4 560,939 - -1.2 560,945 - -0.0 560,982 + +0.3 561,143 - DDA3937_RS02540 0.39 -1.0 561,392 - DDA3937_RS02540 0.89 +0.4 561,437 - +0.1 561,437 - +0.2 561,437 - +0.1 561,479 + +0.0 561,479 + +0.0 561,479 + -0.6 561,479 + +1.1 561,480 - -0.5 561,480 - +0.1 561,514 + -0.2 561,515 - -0.2 561,540 - -0.2 561,551 + -0.0 561,551 + +0.1 561,552 - +0.5 561,583 - +0.3 561,594 + +0.5 561,594 + +1.1 561,595 - -2.0 561,595 - +0.2 561,595 - +0.9 561,595 - +1.0 561,595 - +0.3 561,631 - -1.1 561,631 - -0.6 561,693 + -1.1 561,693 + +0.1 561,694 - +1.4 561,694 - -0.1 561,795 - -1.7 561,795 - +0.6 561,796 + -0.8 561,796 + -1.0 561,796 + -0.8 561,797 - -0.8 561,797 - -1.4 561,797 - -0.3 561,800 + -2.4 561,881 + -0.1 561,881 + +1.6 561,891 + -2.6 561,892 - +0.0 561,895 + -2.0 561,895 + -0.9 561,895 + -0.0 561,924 + +1.6 561,924 + -1.0 561,924 + -0.9
Or see this region's nucleotide sequence