Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02415

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02405 and DDA3937_RS02410 are separated by 319 nucleotidesDDA3937_RS02410 and DDA3937_RS02415 are separated by 13 nucleotidesDDA3937_RS02415 and DDA3937_RS02420 are separated by 69 nucleotides DDA3937_RS02405: DDA3937_RS02405 - cell division protein ZapA, at 533,044 to 533,373 _RS02405 DDA3937_RS02410: DDA3937_RS02410 - 5-formyltetrahydrofolate cyclo-ligase, at 533,693 to 534,307 _RS02410 DDA3937_RS02415: DDA3937_RS02415 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 534,321 to 535,577 _RS02415 DDA3937_RS02420: DDA3937_RS02420 - DNA repair protein RadA, at 535,647 to 537,032 _RS02420 Position (kb) 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.341 kb on - strandat 533.396 kb on - strandat 533.433 kb on + strandat 533.433 kb on + strandat 533.433 kb on + strandat 533.433 kb on + strandat 533.433 kb on + strandat 533.433 kb on + strandat 533.433 kb on + strandat 533.434 kb on - strandat 533.528 kb on + strandat 533.529 kb on - strandat 533.609 kb on + strandat 533.645 kb on + strandat 533.645 kb on + strandat 533.646 kb on - strandat 533.650 kb on - strandat 533.674 kb on + strandat 533.674 kb on + strandat 533.674 kb on + strandat 533.675 kb on - strandat 533.675 kb on - strandat 533.675 kb on - strandat 533.739 kb on + strandat 533.804 kb on - strand, within DDA3937_RS02410at 533.948 kb on + strand, within DDA3937_RS02410at 533.948 kb on + strand, within DDA3937_RS02410at 533.948 kb on + strand, within DDA3937_RS02410at 533.949 kb on - strand, within DDA3937_RS02410at 533.949 kb on - strand, within DDA3937_RS02410at 534.158 kb on + strand, within DDA3937_RS02410at 534.246 kb on + strandat 534.277 kb on + strandat 534.277 kb on + strandat 534.277 kb on + strandat 534.323 kb on - strandat 534.406 kb on + strandat 534.431 kb on - strandat 534.431 kb on - strandat 534.440 kb on + strandat 534.440 kb on + strandat 534.440 kb on + strandat 534.441 kb on - strandat 534.455 kb on + strand, within DDA3937_RS02415at 534.456 kb on - strand, within DDA3937_RS02415at 534.456 kb on - strand, within DDA3937_RS02415at 534.456 kb on - strand, within DDA3937_RS02415at 534.568 kb on + strand, within DDA3937_RS02415at 534.614 kb on - strand, within DDA3937_RS02415at 534.614 kb on - strand, within DDA3937_RS02415at 534.676 kb on + strand, within DDA3937_RS02415at 534.677 kb on - strand, within DDA3937_RS02415at 534.697 kb on + strand, within DDA3937_RS02415at 534.698 kb on - strand, within DDA3937_RS02415at 534.779 kb on - strand, within DDA3937_RS02415at 534.779 kb on - strand, within DDA3937_RS02415at 534.779 kb on - strand, within DDA3937_RS02415at 534.914 kb on + strandat 534.914 kb on + strand, within DDA3937_RS02415at 534.915 kb on - strand, within DDA3937_RS02415at 534.915 kb on - strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 535.022 kb on - strand, within DDA3937_RS02415at 535.051 kb on + strand, within DDA3937_RS02415at 535.051 kb on + strand, within DDA3937_RS02415at 535.085 kb on + strand, within DDA3937_RS02415at 535.085 kb on + strand, within DDA3937_RS02415at 535.085 kb on + strand, within DDA3937_RS02415at 535.086 kb on - strand, within DDA3937_RS02415at 535.086 kb on - strand, within DDA3937_RS02415at 535.296 kb on + strand, within DDA3937_RS02415at 535.296 kb on + strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strandat 535.334 kb on - strand, within DDA3937_RS02415at 535.358 kb on - strand, within DDA3937_RS02415at 535.371 kb on + strand, within DDA3937_RS02415at 535.371 kb on + strand, within DDA3937_RS02415at 535.372 kb on - strand, within DDA3937_RS02415at 535.372 kb on - strand, within DDA3937_RS02415at 535.397 kb on - strand, within DDA3937_RS02415at 535.434 kb on + strand, within DDA3937_RS02415at 535.434 kb on + strand, within DDA3937_RS02415at 535.434 kb on + strand, within DDA3937_RS02415at 535.486 kb on + strandat 535.567 kb on + strandat 535.611 kb on + strandat 535.611 kb on + strandat 535.611 kb on + strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.617 kb on - strandat 535.698 kb on + strandat 535.699 kb on - strandat 535.699 kb on - strandat 535.784 kb on + strandat 535.784 kb on + strandat 535.784 kb on + strandat 535.785 kb on - strandat 536.124 kb on + strand, within DDA3937_RS02420at 536.124 kb on + strand, within DDA3937_RS02420at 536.124 kb on + strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.223 kb on + strand, within DDA3937_RS02420at 536.322 kb on - strand, within DDA3937_RS02420at 536.322 kb on - strand, within DDA3937_RS02420at 536.422 kb on + strand, within DDA3937_RS02420

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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533,341 - +0.6
533,396 - +0.9
533,433 + +1.8
533,433 + +0.8
533,433 + +0.3
533,433 + +0.8
533,433 + -0.9
533,433 + +1.8
533,433 + -1.6
533,434 - +0.6
533,528 + +0.9
533,529 - -3.1
533,609 + -0.9
533,645 + +0.3
533,645 + -0.3
533,646 - +0.2
533,650 - -0.8
533,674 + -0.4
533,674 + -0.4
533,674 + +2.0
533,675 - -0.5
533,675 - +1.1
533,675 - -0.7
533,739 + +0.4
533,804 - DDA3937_RS02410 0.18 +0.3
533,948 + DDA3937_RS02410 0.41 +0.0
533,948 + DDA3937_RS02410 0.41 +0.6
533,948 + DDA3937_RS02410 0.41 -0.4
533,949 - DDA3937_RS02410 0.42 -1.0
533,949 - DDA3937_RS02410 0.42 +0.3
534,158 + DDA3937_RS02410 0.76 +1.0
534,246 + -0.6
534,277 + +0.1
534,277 + -1.3
534,277 + -0.1
534,323 - +0.3
534,406 + -0.2
534,431 - +0.9
534,431 - -0.6
534,440 + +0.1
534,440 + -0.8
534,440 + -0.6
534,441 - -0.4
534,455 + DDA3937_RS02415 0.11 +0.0
534,456 - DDA3937_RS02415 0.11 -0.2
534,456 - DDA3937_RS02415 0.11 +0.5
534,456 - DDA3937_RS02415 0.11 -0.4
534,568 + DDA3937_RS02415 0.20 +0.6
534,614 - DDA3937_RS02415 0.23 +0.2
534,614 - DDA3937_RS02415 0.23 +1.6
534,676 + DDA3937_RS02415 0.28 +1.5
534,677 - DDA3937_RS02415 0.28 -1.6
534,697 + DDA3937_RS02415 0.30 +0.4
534,698 - DDA3937_RS02415 0.30 +0.7
534,779 - DDA3937_RS02415 0.36 +0.1
534,779 - DDA3937_RS02415 0.36 -0.4
534,779 - DDA3937_RS02415 0.36 +0.8
534,914 + -1.7
534,914 + DDA3937_RS02415 0.47 -0.4
534,915 - DDA3937_RS02415 0.47 +0.0
534,915 - DDA3937_RS02415 0.47 +1.6
534,916 + DDA3937_RS02415 0.47 +2.0
534,916 + DDA3937_RS02415 0.47 +2.2
534,916 + DDA3937_RS02415 0.47 -0.4
534,916 + DDA3937_RS02415 0.47 +0.0
534,916 + DDA3937_RS02415 0.47 +0.8
534,917 - DDA3937_RS02415 0.47 -0.1
534,917 - DDA3937_RS02415 0.47 +0.1
534,917 - DDA3937_RS02415 0.47 +1.0
534,917 - DDA3937_RS02415 0.47 -1.0
534,917 - DDA3937_RS02415 0.47 -0.4
534,917 - DDA3937_RS02415 0.47 -1.2
534,917 - DDA3937_RS02415 0.47 +0.2
535,022 - DDA3937_RS02415 0.56 +0.8
535,051 + DDA3937_RS02415 0.58 -0.2
535,051 + DDA3937_RS02415 0.58 -0.5
535,085 + DDA3937_RS02415 0.61 -0.7
535,085 + DDA3937_RS02415 0.61 -0.2
535,085 + DDA3937_RS02415 0.61 +1.1
535,086 - DDA3937_RS02415 0.61 +0.6
535,086 - DDA3937_RS02415 0.61 +1.8
535,296 + DDA3937_RS02415 0.78 -2.0
535,296 + DDA3937_RS02415 0.78 -0.1
535,297 - DDA3937_RS02415 0.78 +0.8
535,297 - DDA3937_RS02415 0.78 +0.1
535,297 - DDA3937_RS02415 0.78 -0.0
535,297 - DDA3937_RS02415 0.78 +0.6
535,297 - DDA3937_RS02415 0.78 +0.5
535,297 - -0.4
535,334 - DDA3937_RS02415 0.81 -0.2
535,358 - DDA3937_RS02415 0.82 -0.5
535,371 + DDA3937_RS02415 0.84 -0.2
535,371 + DDA3937_RS02415 0.84 -0.4
535,372 - DDA3937_RS02415 0.84 -0.4
535,372 - DDA3937_RS02415 0.84 +1.6
535,397 - DDA3937_RS02415 0.86 -1.1
535,434 + DDA3937_RS02415 0.89 +0.1
535,434 + DDA3937_RS02415 0.89 -0.4
535,434 + DDA3937_RS02415 0.89 -1.3
535,486 + -0.4
535,567 + +1.2
535,611 + +0.7
535,611 + +0.8
535,611 + -0.8
535,612 - -0.4
535,612 - +0.0
535,612 - -0.4
535,612 - +0.5
535,612 - -1.3
535,617 - +0.8
535,698 + +0.4
535,699 - -1.2
535,699 - -0.8
535,784 + -2.2
535,784 + -1.0
535,784 + +0.3
535,785 - -0.5
536,124 + DDA3937_RS02420 0.34 -1.2
536,124 + DDA3937_RS02420 0.34 -0.4
536,124 + DDA3937_RS02420 0.34 +2.2
536,125 - DDA3937_RS02420 0.34 -1.4
536,125 - DDA3937_RS02420 0.34 -0.4
536,125 - DDA3937_RS02420 0.34 +0.4
536,125 - DDA3937_RS02420 0.34 -0.2
536,223 + DDA3937_RS02420 0.42 -1.7
536,322 - DDA3937_RS02420 0.49 -2.4
536,322 - DDA3937_RS02420 0.49 +0.6
536,422 + DDA3937_RS02420 0.56 +0.6

Or see this region's nucleotide sequence