Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02340 and DDA3937_RS02345 are separated by 277 nucleotides DDA3937_RS02345 and DDA3937_RS02350 are separated by 365 nucleotides DDA3937_RS02350 and DDA3937_RS02355 overlap by 4 nucleotides DDA3937_RS02355 and DDA3937_RS02360 are separated by 76 nucleotides
DDA3937_RS02340: DDA3937_RS02340 - hypothetical protein, at 518,418 to 518,687
_RS02340
DDA3937_RS02345: DDA3937_RS02345 - hypothetical protein, at 518,965 to 519,222
_RS02345
DDA3937_RS02350: DDA3937_RS02350 - ABC transporter ATP-binding protein, at 519,588 to 521,288
_RS02350
DDA3937_RS02355: DDA3937_RS02355 - ABC transporter permease, at 521,285 to 522,124
_RS02355
DDA3937_RS02360: DDA3937_RS02360 - ABC transporter permease, at 522,201 to 523,166
_RS02360
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 518.609 kb on + strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.637 kb on + strand, within DDA3937_RS02340 at 518.692 kb on + strand at 518.730 kb on + strand at 518.734 kb on + strand at 518.970 kb on + strand at 518.970 kb on + strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.973 kb on + strand at 518.979 kb on + strand at 518.980 kb on - strand at 519.001 kb on + strand, within DDA3937_RS02345 at 519.002 kb on - strand, within DDA3937_RS02345 at 519.049 kb on - strand, within DDA3937_RS02345 at 519.058 kb on + strand, within DDA3937_RS02345 at 519.096 kb on + strand, within DDA3937_RS02345 at 519.126 kb on - strand, within DDA3937_RS02345 at 519.214 kb on + strand at 519.303 kb on + strand at 519.306 kb on + strand at 519.309 kb on - strand at 519.349 kb on - strand at 519.621 kb on + strand at 519.658 kb on + strand at 519.681 kb on + strand at 519.776 kb on + strand at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 520.131 kb on - strand, within DDA3937_RS02350 at 520.227 kb on + strand, within DDA3937_RS02350 at 520.227 kb on + strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.248 kb on - strand, within DDA3937_RS02350 at 520.307 kb on + strand, within DDA3937_RS02350 at 520.307 kb on + strand, within DDA3937_RS02350 at 520.307 kb on + strand, within DDA3937_RS02350 at 520.310 kb on + strand, within DDA3937_RS02350 at 520.311 kb on - strand, within DDA3937_RS02350 at 520.368 kb on + strand, within DDA3937_RS02350 at 520.513 kb on + strand, within DDA3937_RS02350 at 520.514 kb on - strand, within DDA3937_RS02350 at 520.884 kb on - strand, within DDA3937_RS02350 at 520.899 kb on - strand, within DDA3937_RS02350 at 520.975 kb on - strand, within DDA3937_RS02350 at 521.135 kb on + strand at 521.309 kb on - strand at 521.537 kb on + strand at 521.538 kb on - strand, within DDA3937_RS02355 at 521.554 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.572 kb on - strand, within DDA3937_RS02355 at 521.572 kb on - strand, within DDA3937_RS02355 at 521.659 kb on - strand, within DDA3937_RS02355 at 521.695 kb on + strand, within DDA3937_RS02355 at 521.696 kb on - strand, within DDA3937_RS02355 at 521.898 kb on + strand, within DDA3937_RS02355 at 521.899 kb on - strand, within DDA3937_RS02355 at 522.041 kb on + strand at 522.042 kb on - strand at 522.042 kb on - strand at 522.100 kb on - strand at 522.118 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.143 kb on - strand at 522.149 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.173 kb on - strand at 522.173 kb on - strand at 522.173 kb on - strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.180 kb on - strand at 522.188 kb on - strand at 522.190 kb on - strand at 522.190 kb on - strand at 522.190 kb on - strand at 522.253 kb on + strand at 522.253 kb on + strand at 522.254 kb on - strand at 522.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 518,609 + DDA3937_RS02340 0.71 -1.3 518,610 - DDA3937_RS02340 0.71 -0.7 518,610 - DDA3937_RS02340 0.71 +0.8 518,610 - DDA3937_RS02340 0.71 -0.3 518,610 - DDA3937_RS02340 0.71 -0.2 518,637 + DDA3937_RS02340 0.81 +1.3 518,692 + +0.8 518,730 + +0.6 518,734 + -0.6 518,970 + -0.0 518,970 + -1.5 518,971 - +0.1 518,971 - -0.1 518,971 - -0.1 518,973 + -1.4 518,979 + -0.6 518,980 - +0.8 519,001 + DDA3937_RS02345 0.14 -1.4 519,002 - DDA3937_RS02345 0.14 +0.6 519,049 - DDA3937_RS02345 0.33 +0.2 519,058 + DDA3937_RS02345 0.36 -1.1 519,096 + DDA3937_RS02345 0.51 +0.1 519,126 - DDA3937_RS02345 0.62 +0.8 519,214 + +0.9 519,303 + +0.4 519,306 + +0.4 519,309 - +0.4 519,349 - +1.3 519,621 + +0.0 519,658 + -0.2 519,681 + +0.9 519,776 + -0.4 519,920 + DDA3937_RS02350 0.20 -0.4 519,920 + DDA3937_RS02350 0.20 -0.6 519,920 + DDA3937_RS02350 0.20 -1.7 519,920 + DDA3937_RS02350 0.20 +0.0 519,920 + DDA3937_RS02350 0.20 -1.4 519,920 + DDA3937_RS02350 0.20 -0.5 519,921 - DDA3937_RS02350 0.20 +0.2 519,921 - DDA3937_RS02350 0.20 -0.8 519,921 - DDA3937_RS02350 0.20 -0.4 519,921 - DDA3937_RS02350 0.20 -0.1 519,921 - DDA3937_RS02350 0.20 +0.5 519,921 - DDA3937_RS02350 0.20 -1.6 519,921 - DDA3937_RS02350 0.20 -0.7 520,131 - DDA3937_RS02350 0.32 +0.3 520,227 + DDA3937_RS02350 0.38 +0.6 520,227 + DDA3937_RS02350 0.38 -0.3 520,228 - DDA3937_RS02350 0.38 +0.6 520,228 - DDA3937_RS02350 0.38 -0.2 520,228 - DDA3937_RS02350 0.38 -2.7 520,228 - DDA3937_RS02350 0.38 +0.0 520,248 - DDA3937_RS02350 0.39 -2.0 520,307 + DDA3937_RS02350 0.42 -2.2 520,307 + DDA3937_RS02350 0.42 -1.0 520,307 + DDA3937_RS02350 0.42 -1.4 520,310 + DDA3937_RS02350 0.42 +0.3 520,311 - DDA3937_RS02350 0.43 -0.1 520,368 + DDA3937_RS02350 0.46 -2.7 520,513 + DDA3937_RS02350 0.54 -0.5 520,514 - DDA3937_RS02350 0.54 +0.5 520,884 - DDA3937_RS02350 0.76 -1.9 520,899 - DDA3937_RS02350 0.77 -0.6 520,975 - DDA3937_RS02350 0.82 -0.4 521,135 + -1.3 521,309 - +3.4 521,537 + +2.6 521,538 - DDA3937_RS02355 0.30 +0.6 521,554 + DDA3937_RS02355 0.32 +0.5 521,571 + DDA3937_RS02355 0.34 +1.5 521,571 + DDA3937_RS02355 0.34 -0.3 521,571 + DDA3937_RS02355 0.34 -1.2 521,571 + DDA3937_RS02355 0.34 -1.3 521,571 + DDA3937_RS02355 0.34 -0.5 521,572 - DDA3937_RS02355 0.34 +0.2 521,572 - DDA3937_RS02355 0.34 +1.8 521,659 - DDA3937_RS02355 0.45 +0.6 521,695 + DDA3937_RS02355 0.49 -0.7 521,696 - DDA3937_RS02355 0.49 +0.6 521,898 + DDA3937_RS02355 0.73 -0.5 521,899 - DDA3937_RS02355 0.73 -0.5 522,041 + +0.3 522,042 - -0.8 522,042 - -0.1 522,100 - +0.1 522,118 + -1.1 522,142 + -2.7 522,142 + -0.2 522,142 + -0.3 522,142 + -0.6 522,143 - +0.4 522,149 + +0.6 522,172 + -0.3 522,172 + +0.2 522,172 + -0.3 522,172 + -0.7 522,173 - +1.7 522,173 - -0.2 522,173 - -0.4 522,174 + -0.7 522,174 + +0.9 522,174 + +0.5 522,174 + -0.3 522,174 + -0.1 522,174 + -0.8 522,174 + -1.1 522,175 - -1.4 522,175 - -0.4 522,175 - -1.0 522,175 - -0.1 522,180 - -0.9 522,188 - -1.4 522,190 - -0.4 522,190 - -0.4 522,190 - -0.3 522,253 + -1.7 522,253 + +0.6 522,254 - +1.2 522,254 - -0.4
Or see this region's nucleotide sequence