Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02125 and DDA3937_RS02130 overlap by 38 nucleotides DDA3937_RS02130 and DDA3937_RS02135 are separated by 106 nucleotides DDA3937_RS02135 and DDA3937_RS02140 overlap by 4 nucleotides
DDA3937_RS02125: DDA3937_RS02125 - MFS transporter, at 472,983 to 474,374
_RS02125
DDA3937_RS02130: DDA3937_RS02130 - PLP-dependent aminotransferase family protein, at 474,337 to 475,821
_RS02130
DDA3937_RS02135: DDA3937_RS02135 - GNAT family N-acetyltransferase, at 475,928 to 476,377
_RS02135
DDA3937_RS02140: DDA3937_RS02140 - carboxymuconolactone decarboxylase family protein, at 476,374 to 476,805
_RS02140
Position (kb) 474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 473.404 kb on - strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.743 kb on - strand, within DDA3937_RS02125 at 473.772 kb on + strand, within DDA3937_RS02125 at 473.773 kb on - strand, within DDA3937_RS02125 at 473.801 kb on + strand, within DDA3937_RS02125 at 473.801 kb on + strand, within DDA3937_RS02125 at 473.801 kb on + strand, within DDA3937_RS02125 at 473.809 kb on + strand, within DDA3937_RS02125 at 473.828 kb on + strand, within DDA3937_RS02125 at 473.829 kb on - strand, within DDA3937_RS02125 at 473.884 kb on - strand, within DDA3937_RS02125 at 474.007 kb on + strand, within DDA3937_RS02125 at 474.008 kb on - strand, within DDA3937_RS02125 at 474.102 kb on - strand, within DDA3937_RS02125 at 474.373 kb on - strand at 474.487 kb on + strand, within DDA3937_RS02130 at 474.488 kb on - strand, within DDA3937_RS02130 at 474.643 kb on + strand, within DDA3937_RS02130 at 474.643 kb on + strand, within DDA3937_RS02130 at 474.643 kb on + strand, within DDA3937_RS02130 at 474.644 kb on - strand, within DDA3937_RS02130 at 474.644 kb on - strand, within DDA3937_RS02130 at 474.684 kb on - strand, within DDA3937_RS02130 at 474.701 kb on + strand, within DDA3937_RS02130 at 474.724 kb on - strand, within DDA3937_RS02130 at 474.724 kb on - strand, within DDA3937_RS02130 at 474.751 kb on - strand, within DDA3937_RS02130 at 474.789 kb on + strand, within DDA3937_RS02130 at 474.790 kb on - strand, within DDA3937_RS02130 at 474.851 kb on + strand, within DDA3937_RS02130 at 474.851 kb on + strand, within DDA3937_RS02130 at 474.851 kb on + strand, within DDA3937_RS02130 at 474.852 kb on - strand, within DDA3937_RS02130 at 474.899 kb on + strand, within DDA3937_RS02130 at 474.899 kb on + strand, within DDA3937_RS02130 at 474.899 kb on + strand, within DDA3937_RS02130 at 474.900 kb on - strand, within DDA3937_RS02130 at 474.904 kb on - strand, within DDA3937_RS02130 at 474.904 kb on - strand, within DDA3937_RS02130 at 474.918 kb on + strand, within DDA3937_RS02130 at 474.940 kb on + strand, within DDA3937_RS02130 at 474.974 kb on + strand, within DDA3937_RS02130 at 474.974 kb on + strand, within DDA3937_RS02130 at 474.975 kb on - strand, within DDA3937_RS02130 at 474.975 kb on - strand, within DDA3937_RS02130 at 474.975 kb on - strand, within DDA3937_RS02130 at 475.051 kb on + strand, within DDA3937_RS02130 at 475.109 kb on + strand, within DDA3937_RS02130 at 475.110 kb on - strand, within DDA3937_RS02130 at 475.220 kb on + strand at 475.220 kb on + strand, within DDA3937_RS02130 at 475.221 kb on - strand, within DDA3937_RS02130 at 475.221 kb on - strand, within DDA3937_RS02130 at 475.258 kb on + strand, within DDA3937_RS02130 at 475.258 kb on + strand, within DDA3937_RS02130 at 475.259 kb on - strand, within DDA3937_RS02130 at 475.259 kb on - strand, within DDA3937_RS02130 at 475.259 kb on - strand, within DDA3937_RS02130 at 475.261 kb on - strand, within DDA3937_RS02130 at 475.340 kb on + strand, within DDA3937_RS02130 at 475.340 kb on + strand, within DDA3937_RS02130 at 475.341 kb on - strand, within DDA3937_RS02130 at 475.350 kb on + strand, within DDA3937_RS02130 at 475.350 kb on + strand, within DDA3937_RS02130 at 475.351 kb on - strand, within DDA3937_RS02130 at 475.593 kb on + strand, within DDA3937_RS02130 at 475.620 kb on - strand, within DDA3937_RS02130 at 475.643 kb on + strand, within DDA3937_RS02130 at 475.696 kb on + strand at 475.696 kb on + strand at 475.723 kb on + strand at 475.724 kb on - strand at 475.760 kb on + strand at 475.825 kb on + strand at 475.826 kb on - strand at 475.826 kb on - strand at 475.826 kb on - strand at 475.839 kb on + strand at 475.839 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.881 kb on - strand at 475.907 kb on - strand at 475.914 kb on + strand at 475.915 kb on - strand at 475.957 kb on + strand at 475.958 kb on - strand at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.984 kb on + strand, within DDA3937_RS02135 at 475.985 kb on - strand, within DDA3937_RS02135 at 475.985 kb on - strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.043 kb on + strand, within DDA3937_RS02135 at 476.044 kb on - strand, within DDA3937_RS02135 at 476.044 kb on - strand, within DDA3937_RS02135 at 476.157 kb on - strand, within DDA3937_RS02135 at 476.157 kb on - strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.173 kb on - strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.229 kb on - strand, within DDA3937_RS02135 at 476.280 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.292 kb on + strand, within DDA3937_RS02135 at 476.345 kb on - strand at 476.371 kb on - strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.374 kb on - strand at 476.374 kb on - strand at 476.385 kb on - strand at 476.385 kb on - strand at 476.385 kb on - strand at 476.419 kb on + strand, within DDA3937_RS02140 at 476.419 kb on + strand, within DDA3937_RS02140 at 476.420 kb on - strand, within DDA3937_RS02140 at 476.480 kb on + strand, within DDA3937_RS02140 at 476.480 kb on + strand, within DDA3937_RS02140 at 476.481 kb on - strand, within DDA3937_RS02140 at 476.481 kb on - strand, within DDA3937_RS02140 at 476.491 kb on + strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.567 kb on + strand, within DDA3937_RS02140 at 476.567 kb on + strand, within DDA3937_RS02140 at 476.568 kb on - strand, within DDA3937_RS02140 at 476.568 kb on - strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.611 kb on - strand, within DDA3937_RS02140 at 476.700 kb on + strand, within DDA3937_RS02140 at 476.701 kb on - strand, within DDA3937_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 473,404 - DDA3937_RS02125 0.30 -0.5 473,414 + DDA3937_RS02125 0.31 -0.2 473,414 + DDA3937_RS02125 0.31 -0.0 473,414 + DDA3937_RS02125 0.31 -0.4 473,415 - DDA3937_RS02125 0.31 -0.1 473,415 - DDA3937_RS02125 0.31 +0.4 473,415 - DDA3937_RS02125 0.31 -0.1 473,534 + DDA3937_RS02125 0.40 +1.4 473,534 + DDA3937_RS02125 0.40 -0.4 473,534 + DDA3937_RS02125 0.40 +0.2 473,534 + DDA3937_RS02125 0.40 +0.2 473,535 - DDA3937_RS02125 0.40 -1.4 473,535 - DDA3937_RS02125 0.40 +1.0 473,535 - DDA3937_RS02125 0.40 -0.3 473,535 - DDA3937_RS02125 0.40 -0.3 473,535 - DDA3937_RS02125 0.40 +0.2 473,535 - DDA3937_RS02125 0.40 -0.8 473,536 + DDA3937_RS02125 0.40 -0.1 473,536 + DDA3937_RS02125 0.40 +1.2 473,536 + DDA3937_RS02125 0.40 -1.1 473,537 - DDA3937_RS02125 0.40 +0.0 473,537 - DDA3937_RS02125 0.40 -0.4 473,743 - DDA3937_RS02125 0.55 +0.0 473,772 + DDA3937_RS02125 0.57 +0.3 473,773 - DDA3937_RS02125 0.57 -0.3 473,801 + DDA3937_RS02125 0.59 -0.4 473,801 + DDA3937_RS02125 0.59 +0.3 473,801 + DDA3937_RS02125 0.59 -0.3 473,809 + DDA3937_RS02125 0.59 -0.9 473,828 + DDA3937_RS02125 0.61 -1.2 473,829 - DDA3937_RS02125 0.61 -0.1 473,884 - DDA3937_RS02125 0.65 +1.6 474,007 + DDA3937_RS02125 0.74 -0.1 474,008 - DDA3937_RS02125 0.74 +0.3 474,102 - DDA3937_RS02125 0.80 -0.7 474,373 - -0.7 474,487 + DDA3937_RS02130 0.10 +0.6 474,488 - DDA3937_RS02130 0.10 -1.4 474,643 + DDA3937_RS02130 0.21 -0.4 474,643 + DDA3937_RS02130 0.21 +0.1 474,643 + DDA3937_RS02130 0.21 -0.9 474,644 - DDA3937_RS02130 0.21 -0.8 474,644 - DDA3937_RS02130 0.21 +0.1 474,684 - DDA3937_RS02130 0.23 +0.0 474,701 + DDA3937_RS02130 0.25 -1.2 474,724 - DDA3937_RS02130 0.26 -0.2 474,724 - DDA3937_RS02130 0.26 +0.8 474,751 - DDA3937_RS02130 0.28 -0.7 474,789 + DDA3937_RS02130 0.30 +0.4 474,790 - DDA3937_RS02130 0.31 -1.7 474,851 + DDA3937_RS02130 0.35 -0.2 474,851 + DDA3937_RS02130 0.35 -1.0 474,851 + DDA3937_RS02130 0.35 -0.3 474,852 - DDA3937_RS02130 0.35 -0.1 474,899 + DDA3937_RS02130 0.38 -1.6 474,899 + DDA3937_RS02130 0.38 -2.0 474,899 + DDA3937_RS02130 0.38 +0.9 474,900 - DDA3937_RS02130 0.38 -1.3 474,904 - DDA3937_RS02130 0.38 -0.4 474,904 - DDA3937_RS02130 0.38 +0.6 474,918 + DDA3937_RS02130 0.39 -1.2 474,940 + DDA3937_RS02130 0.41 +0.6 474,974 + DDA3937_RS02130 0.43 -0.3 474,974 + DDA3937_RS02130 0.43 -0.2 474,975 - DDA3937_RS02130 0.43 -1.7 474,975 - DDA3937_RS02130 0.43 -0.1 474,975 - DDA3937_RS02130 0.43 -0.2 475,051 + DDA3937_RS02130 0.48 -0.8 475,109 + DDA3937_RS02130 0.52 -0.1 475,110 - DDA3937_RS02130 0.52 -0.8 475,220 + +1.6 475,220 + DDA3937_RS02130 0.59 -0.2 475,221 - DDA3937_RS02130 0.60 -0.3 475,221 - DDA3937_RS02130 0.60 -1.4 475,258 + DDA3937_RS02130 0.62 -0.5 475,258 + DDA3937_RS02130 0.62 -1.0 475,259 - DDA3937_RS02130 0.62 +0.5 475,259 - DDA3937_RS02130 0.62 -0.8 475,259 - DDA3937_RS02130 0.62 +0.9 475,261 - DDA3937_RS02130 0.62 +0.2 475,340 + DDA3937_RS02130 0.68 +0.8 475,340 + DDA3937_RS02130 0.68 -1.3 475,341 - DDA3937_RS02130 0.68 +0.7 475,350 + DDA3937_RS02130 0.68 -0.3 475,350 + DDA3937_RS02130 0.68 -0.0 475,351 - DDA3937_RS02130 0.68 -1.1 475,593 + DDA3937_RS02130 0.85 -0.4 475,620 - DDA3937_RS02130 0.86 +0.5 475,643 + DDA3937_RS02130 0.88 -0.1 475,696 + +0.0 475,696 + +0.8 475,723 + +0.3 475,724 - -0.2 475,760 + -2.0 475,825 + +0.7 475,826 - -0.4 475,826 - -1.2 475,826 - -1.1 475,839 + -0.8 475,839 + -0.8 475,846 + +0.2 475,846 + +1.0 475,846 + +0.1 475,846 + +2.5 475,847 - -0.2 475,847 - -0.4 475,847 - -0.6 475,880 + -0.5 475,880 + +2.0 475,880 + -0.4 475,880 + +0.0 475,881 - -0.3 475,907 - -0.4 475,914 + -0.1 475,915 - -0.3 475,957 + +0.3 475,958 - -1.7 475,974 + DDA3937_RS02135 0.10 -0.2 475,974 + DDA3937_RS02135 0.10 -0.1 475,974 + DDA3937_RS02135 0.10 +0.2 475,974 + DDA3937_RS02135 0.10 +0.9 475,984 + DDA3937_RS02135 0.12 +0.2 475,985 - DDA3937_RS02135 0.13 -1.0 475,985 - DDA3937_RS02135 0.13 +0.3 476,013 + DDA3937_RS02135 0.19 +0.1 476,013 + DDA3937_RS02135 0.19 -1.7 476,013 + DDA3937_RS02135 0.19 -0.3 476,043 + DDA3937_RS02135 0.26 +0.1 476,044 - DDA3937_RS02135 0.26 +2.2 476,044 - DDA3937_RS02135 0.26 -0.6 476,157 - DDA3937_RS02135 0.51 -0.3 476,157 - DDA3937_RS02135 0.51 +1.9 476,172 + DDA3937_RS02135 0.54 +0.0 476,172 + DDA3937_RS02135 0.54 -0.7 476,172 + DDA3937_RS02135 0.54 -1.3 476,172 + DDA3937_RS02135 0.54 -1.1 476,173 - DDA3937_RS02135 0.54 -0.1 476,228 + DDA3937_RS02135 0.67 +0.5 476,228 + DDA3937_RS02135 0.67 +0.2 476,228 + DDA3937_RS02135 0.67 -0.6 476,228 + DDA3937_RS02135 0.67 +0.3 476,228 + DDA3937_RS02135 0.67 -0.9 476,229 - DDA3937_RS02135 0.67 +0.3 476,280 + DDA3937_RS02135 0.78 -0.3 476,284 + DDA3937_RS02135 0.79 -0.4 476,284 + DDA3937_RS02135 0.79 -0.7 476,284 + DDA3937_RS02135 0.79 -0.5 476,284 + DDA3937_RS02135 0.79 -0.2 476,285 - DDA3937_RS02135 0.79 -0.4 476,285 - DDA3937_RS02135 0.79 -0.8 476,285 - DDA3937_RS02135 0.79 -1.7 476,292 + DDA3937_RS02135 0.81 +0.9 476,345 - +0.1 476,371 - -0.8 476,373 + -0.2 476,373 + +1.6 476,373 + -0.1 476,373 + +0.1 476,374 - +0.7 476,374 - -0.5 476,385 - +0.0 476,385 - -0.5 476,385 - -0.3 476,419 + DDA3937_RS02140 0.10 +0.2 476,419 + DDA3937_RS02140 0.10 -0.5 476,420 - DDA3937_RS02140 0.11 -0.2 476,480 + DDA3937_RS02140 0.25 -0.7 476,480 + DDA3937_RS02140 0.25 +0.2 476,481 - DDA3937_RS02140 0.25 -1.0 476,481 - DDA3937_RS02140 0.25 -0.5 476,491 + DDA3937_RS02140 0.27 -0.7 476,492 - DDA3937_RS02140 0.27 -0.3 476,492 - DDA3937_RS02140 0.27 +0.6 476,492 - DDA3937_RS02140 0.27 +0.5 476,492 - DDA3937_RS02140 0.27 -0.7 476,492 - DDA3937_RS02140 0.27 -0.8 476,567 + DDA3937_RS02140 0.45 +0.7 476,567 + DDA3937_RS02140 0.45 +0.2 476,568 - DDA3937_RS02140 0.45 +0.3 476,568 - DDA3937_RS02140 0.45 +0.0 476,610 + DDA3937_RS02140 0.55 +0.2 476,610 + DDA3937_RS02140 0.55 -0.9 476,610 + DDA3937_RS02140 0.55 -0.4 476,611 - DDA3937_RS02140 0.55 -0.4 476,700 + DDA3937_RS02140 0.75 -0.3 476,701 - DDA3937_RS02140 0.76 -1.4
Or see this region's nucleotide sequence