Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01695

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01690 and DDA3937_RS01695 are separated by 92 nucleotidesDDA3937_RS01695 and DDA3937_RS01700 are separated by 10 nucleotidesDDA3937_RS01700 and DDA3937_RS01705 are separated by 37 nucleotidesDDA3937_RS01705 and DDA3937_RS01710 overlap by 4 nucleotides DDA3937_RS01690: DDA3937_RS01690 - alginate lyase family protein, at 374,733 to 376,034 _RS01690 DDA3937_RS01695: DDA3937_RS01695 - divisome-associated lipoprotein YraP, at 376,127 to 376,702 _RS01695 DDA3937_RS01700: DDA3937_RS01700 - DnaA initiator-associating protein DiaA, at 376,713 to 377,303 _RS01700 DDA3937_RS01705: DDA3937_RS01705 - YraN family protein, at 377,341 to 377,697 _RS01705 DDA3937_RS01710: DDA3937_RS01710 - penicillin-binding protein activator, at 377,694 to 379,745 _RS01710 Position (kb) 376 377Strain fitness (log2 ratio) -2 -1 0 1 2at 375.151 kb on + strand, within DDA3937_RS01690at 375.151 kb on + strand, within DDA3937_RS01690at 375.152 kb on - strand, within DDA3937_RS01690at 375.158 kb on - strand, within DDA3937_RS01690at 375.158 kb on - strand, within DDA3937_RS01690at 375.158 kb on - strand, within DDA3937_RS01690at 375.158 kb on - strand, within DDA3937_RS01690at 375.158 kb on - strand, within DDA3937_RS01690at 375.174 kb on + strand, within DDA3937_RS01690at 375.174 kb on + strand, within DDA3937_RS01690at 375.174 kb on + strand, within DDA3937_RS01690at 375.175 kb on - strand, within DDA3937_RS01690at 375.175 kb on - strand, within DDA3937_RS01690at 375.195 kb on + strand, within DDA3937_RS01690at 375.195 kb on + strand, within DDA3937_RS01690at 375.233 kb on + strand, within DDA3937_RS01690at 375.233 kb on + strand, within DDA3937_RS01690at 375.234 kb on - strand, within DDA3937_RS01690at 375.237 kb on - strand, within DDA3937_RS01690at 375.252 kb on - strand, within DDA3937_RS01690at 375.252 kb on - strand, within DDA3937_RS01690at 375.260 kb on + strand, within DDA3937_RS01690at 375.266 kb on - strand, within DDA3937_RS01690at 375.266 kb on - strand, within DDA3937_RS01690at 375.266 kb on - strand, within DDA3937_RS01690at 375.270 kb on + strand, within DDA3937_RS01690at 375.271 kb on - strand, within DDA3937_RS01690at 375.364 kb on + strand, within DDA3937_RS01690at 375.364 kb on + strand, within DDA3937_RS01690at 375.365 kb on - strand, within DDA3937_RS01690at 375.365 kb on - strand, within DDA3937_RS01690at 375.429 kb on + strand, within DDA3937_RS01690at 375.430 kb on - strand, within DDA3937_RS01690at 375.430 kb on - strand, within DDA3937_RS01690at 375.430 kb on - strand, within DDA3937_RS01690at 375.455 kb on + strand, within DDA3937_RS01690at 375.485 kb on + strand, within DDA3937_RS01690at 375.485 kb on + strand, within DDA3937_RS01690at 375.485 kb on + strand, within DDA3937_RS01690at 375.486 kb on - strand, within DDA3937_RS01690at 375.486 kb on - strand, within DDA3937_RS01690at 375.494 kb on + strand, within DDA3937_RS01690at 375.494 kb on + strand, within DDA3937_RS01690at 375.494 kb on + strand, within DDA3937_RS01690at 375.494 kb on + strand, within DDA3937_RS01690at 375.494 kb on + strand, within DDA3937_RS01690at 375.494 kb on + strand, within DDA3937_RS01690at 375.494 kb on + strand, within DDA3937_RS01690at 375.495 kb on - strand, within DDA3937_RS01690at 375.495 kb on - strand, within DDA3937_RS01690at 375.501 kb on + strand, within DDA3937_RS01690at 375.502 kb on - strand, within DDA3937_RS01690at 375.532 kb on - strand, within DDA3937_RS01690at 375.532 kb on - strand, within DDA3937_RS01690at 375.652 kb on - strand, within DDA3937_RS01690at 375.678 kb on - strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.680 kb on + strand, within DDA3937_RS01690at 375.681 kb on - strand, within DDA3937_RS01690at 375.681 kb on - strand, within DDA3937_RS01690at 375.681 kb on - strand, within DDA3937_RS01690at 375.681 kb on - strand, within DDA3937_RS01690at 375.681 kb on - strand, within DDA3937_RS01690at 375.681 kb on - strand, within DDA3937_RS01690at 375.705 kb on + strand, within DDA3937_RS01690at 375.706 kb on - strand, within DDA3937_RS01690at 375.706 kb on - strand, within DDA3937_RS01690at 375.706 kb on - strand, within DDA3937_RS01690at 375.726 kb on + strand, within DDA3937_RS01690at 375.726 kb on + strand, within DDA3937_RS01690at 375.780 kb on + strand, within DDA3937_RS01690at 375.807 kb on + strand, within DDA3937_RS01690at 375.808 kb on - strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.809 kb on + strand, within DDA3937_RS01690at 375.810 kb on - strand, within DDA3937_RS01690at 375.810 kb on - strand, within DDA3937_RS01690at 375.848 kb on - strand, within DDA3937_RS01690at 376.019 kb on + strandat 376.020 kb on - strandat 376.025 kb on + strandat 376.036 kb on + strandat 376.128 kb on + strandat 376.129 kb on - strandat 376.129 kb on - strandat 376.137 kb on + strandat 376.137 kb on + strandat 376.278 kb on - strand, within DDA3937_RS01695at 376.278 kb on - strand, within DDA3937_RS01695at 376.360 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.380 kb on + strand, within DDA3937_RS01695at 376.381 kb on - strand, within DDA3937_RS01695at 376.381 kb on - strand, within DDA3937_RS01695at 376.511 kb on + strand, within DDA3937_RS01695at 376.512 kb on - strand, within DDA3937_RS01695at 376.645 kb on + strandat 376.645 kb on + strandat 376.646 kb on - strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.692 kb on + strandat 376.693 kb on - strandat 376.693 kb on - strandat 376.714 kb on + strandat 376.715 kb on - strandat 376.742 kb on + strandat 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.779 kb on - strand, within DDA3937_RS01700at 376.870 kb on + strand, within DDA3937_RS01700at 376.871 kb on - strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.008 kb on + strand, within DDA3937_RS01700at 377.011 kb on - strand, within DDA3937_RS01700at 377.066 kb on + strand, within DDA3937_RS01700at 377.067 kb on - strand, within DDA3937_RS01700at 377.111 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.153 kb on + strand, within DDA3937_RS01700at 377.154 kb on - strand, within DDA3937_RS01700at 377.253 kb on + strandat 377.288 kb on + strandat 377.402 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.500 kb on - strand, within DDA3937_RS01705at 377.578 kb on - strand, within DDA3937_RS01705at 377.669 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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375,151 + DDA3937_RS01690 0.32 -0.7
375,151 + DDA3937_RS01690 0.32 -0.4
375,152 - DDA3937_RS01690 0.32 +0.8
375,158 - DDA3937_RS01690 0.33 +0.2
375,158 - DDA3937_RS01690 0.33 -0.6
375,158 - DDA3937_RS01690 0.33 +0.1
375,158 - DDA3937_RS01690 0.33 -0.3
375,158 - DDA3937_RS01690 0.33 -0.9
375,174 + DDA3937_RS01690 0.34 -0.8
375,174 + DDA3937_RS01690 0.34 -0.7
375,174 + DDA3937_RS01690 0.34 -0.8
375,175 - DDA3937_RS01690 0.34 +0.1
375,175 - DDA3937_RS01690 0.34 +0.1
375,195 + DDA3937_RS01690 0.35 +0.1
375,195 + DDA3937_RS01690 0.35 -0.5
375,233 + DDA3937_RS01690 0.38 -1.7
375,233 + DDA3937_RS01690 0.38 -0.0
375,234 - DDA3937_RS01690 0.38 -0.1
375,237 - DDA3937_RS01690 0.39 -0.2
375,252 - DDA3937_RS01690 0.40 -0.2
375,252 - DDA3937_RS01690 0.40 -0.3
375,260 + DDA3937_RS01690 0.40 -0.1
375,266 - DDA3937_RS01690 0.41 -0.4
375,266 - DDA3937_RS01690 0.41 -0.2
375,266 - DDA3937_RS01690 0.41 +0.6
375,270 + DDA3937_RS01690 0.41 +0.4
375,271 - DDA3937_RS01690 0.41 +0.4
375,364 + DDA3937_RS01690 0.48 -0.0
375,364 + DDA3937_RS01690 0.48 +0.4
375,365 - DDA3937_RS01690 0.49 -0.2
375,365 - DDA3937_RS01690 0.49 -0.9
375,429 + DDA3937_RS01690 0.53 +0.6
375,430 - DDA3937_RS01690 0.54 -0.9
375,430 - DDA3937_RS01690 0.54 +0.6
375,430 - DDA3937_RS01690 0.54 +0.1
375,455 + DDA3937_RS01690 0.55 +0.7
375,485 + DDA3937_RS01690 0.58 +0.5
375,485 + DDA3937_RS01690 0.58 -0.0
375,485 + DDA3937_RS01690 0.58 +0.4
375,486 - DDA3937_RS01690 0.58 -0.4
375,486 - DDA3937_RS01690 0.58 +0.5
375,494 + DDA3937_RS01690 0.58 +1.1
375,494 + DDA3937_RS01690 0.58 +0.6
375,494 + DDA3937_RS01690 0.58 +0.8
375,494 + DDA3937_RS01690 0.58 -0.1
375,494 + DDA3937_RS01690 0.58 -0.2
375,494 + DDA3937_RS01690 0.58 -0.9
375,494 + DDA3937_RS01690 0.58 -1.9
375,495 - DDA3937_RS01690 0.59 +0.6
375,495 - DDA3937_RS01690 0.59 +0.1
375,501 + DDA3937_RS01690 0.59 -0.1
375,502 - DDA3937_RS01690 0.59 +0.1
375,532 - DDA3937_RS01690 0.61 +0.2
375,532 - DDA3937_RS01690 0.61 +1.6
375,652 - DDA3937_RS01690 0.71 -0.1
375,678 - DDA3937_RS01690 0.73 -0.1
375,680 + DDA3937_RS01690 0.73 -1.4
375,680 + DDA3937_RS01690 0.73 -0.4
375,680 + DDA3937_RS01690 0.73 -0.1
375,680 + DDA3937_RS01690 0.73 -0.0
375,680 + DDA3937_RS01690 0.73 +0.2
375,680 + DDA3937_RS01690 0.73 +0.2
375,680 + DDA3937_RS01690 0.73 +1.0
375,680 + DDA3937_RS01690 0.73 -0.0
375,681 - DDA3937_RS01690 0.73 +0.4
375,681 - DDA3937_RS01690 0.73 -0.4
375,681 - DDA3937_RS01690 0.73 +0.5
375,681 - DDA3937_RS01690 0.73 -0.7
375,681 - DDA3937_RS01690 0.73 +1.1
375,681 - DDA3937_RS01690 0.73 +0.1
375,705 + DDA3937_RS01690 0.75 -0.7
375,706 - DDA3937_RS01690 0.75 -1.4
375,706 - DDA3937_RS01690 0.75 +0.6
375,706 - DDA3937_RS01690 0.75 +0.5
375,726 + DDA3937_RS01690 0.76 -0.5
375,726 + DDA3937_RS01690 0.76 -0.4
375,780 + DDA3937_RS01690 0.80 +0.3
375,807 + DDA3937_RS01690 0.82 -1.2
375,808 - DDA3937_RS01690 0.83 -0.4
375,809 + DDA3937_RS01690 0.83 +1.2
375,809 + DDA3937_RS01690 0.83 -0.8
375,809 + DDA3937_RS01690 0.83 -0.9
375,809 + DDA3937_RS01690 0.83 -0.6
375,809 + DDA3937_RS01690 0.83 +0.5
375,810 - DDA3937_RS01690 0.83 -0.8
375,810 - DDA3937_RS01690 0.83 -0.8
375,848 - DDA3937_RS01690 0.86 -0.9
376,019 + -0.7
376,020 - -0.1
376,025 + +2.6
376,036 + -0.1
376,128 + +1.3
376,129 - +0.3
376,129 - -0.2
376,137 + +0.4
376,137 + +0.6
376,278 - DDA3937_RS01695 0.26 -0.3
376,278 - DDA3937_RS01695 0.26 +1.2
376,360 + DDA3937_RS01695 0.40 +0.1
376,380 + DDA3937_RS01695 0.44 -1.5
376,380 + DDA3937_RS01695 0.44 -2.7
376,380 + DDA3937_RS01695 0.44 -0.2
376,380 + DDA3937_RS01695 0.44 -1.4
376,380 + DDA3937_RS01695 0.44 -0.5
376,380 + DDA3937_RS01695 0.44 -0.7
376,381 - DDA3937_RS01695 0.44 -2.2
376,381 - DDA3937_RS01695 0.44 +0.6
376,511 + DDA3937_RS01695 0.67 -0.4
376,512 - DDA3937_RS01695 0.67 -1.1
376,645 + -1.8
376,645 + -1.9
376,646 - -0.4
376,692 + -0.1
376,692 + -0.4
376,692 + +0.5
376,692 + -0.4
376,692 + -0.8
376,693 - -0.4
376,693 - -0.9
376,714 + +0.1
376,715 - -0.4
376,742 + -1.4
376,779 - DDA3937_RS01700 0.11 -0.1
376,779 - DDA3937_RS01700 0.11 -0.0
376,779 - DDA3937_RS01700 0.11 -0.6
376,779 - DDA3937_RS01700 0.11 +0.1
376,779 - DDA3937_RS01700 0.11 +0.2
376,870 + DDA3937_RS01700 0.27 -0.7
376,871 - DDA3937_RS01700 0.27 -1.2
377,008 + DDA3937_RS01700 0.50 -0.4
377,008 + DDA3937_RS01700 0.50 +0.2
377,011 - DDA3937_RS01700 0.50 -0.4
377,066 + DDA3937_RS01700 0.60 -0.5
377,067 - DDA3937_RS01700 0.60 -0.0
377,111 + DDA3937_RS01700 0.67 -0.9
377,153 + DDA3937_RS01700 0.74 -0.8
377,153 + DDA3937_RS01700 0.74 +0.3
377,154 - DDA3937_RS01700 0.75 -0.4
377,253 + +1.0
377,288 + +0.3
377,402 - DDA3937_RS01705 0.17 +1.5
377,500 - DDA3937_RS01705 0.45 +0.2
377,500 - DDA3937_RS01705 0.45 -1.1
377,578 - DDA3937_RS01705 0.66 +0.5
377,669 + +0.2

Or see this region's nucleotide sequence